Lucie Zinger

Documents

Présentation

Publications

	Mountain soil multitrophic networks shaped by the interplay between habitat and pedoclimatic conditions Irene Calderón-Sanou , Marc Ohlmann , Tamara Münkemüller , Lucie Zinger , Mickael Hedde Soil Biology and Biochemistry, 2024, 190, pp.109282. ⟨10.1016/j.soilbio.2023.109282⟩ Article dans une revue hal-04409236v1
	Molecular ecology of microbiomes in the wild: Common pitfalls, methodological advances and future directions Nicholas M Fountain‐jones , Tatiana Giraud , Lucie Zinger , Holly Bik , Simon Creer Molecular Ecology, In press, ⟨10.1111/mec.17223⟩ Article dans une revue hal-04313134v1
	Spatial turnover of fungi and partner choice shape mycorrhizal networks in epiphytic orchids Rémi Petrolli , Lucie Zinger , Benoît Perez-Lamarque , Géromine Collobert , Chantal Griveau Journal of Ecology, 2022, 110 (11), pp.2568-2584. ⟨10.1111/1365-2745.13986⟩ Article dans une revue hal-03792570v1
	A robust approach to estimate relative phytoplankton cell abundances from metagenomes Juan José Pierella Karlusich , Eric Pelletier , Lucie Zinger , Fabien Lombard , Adriana Zingone Molecular Ecology Resources, 2022, 23 (1), pp.16-40. ⟨10.1111/1755-0998.13592⟩ Article dans une revue hal-03559541v1
	Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods Paula Arribas , Carmelo Andújar , Kristine Bohmann , Jeremy Dewaard , Evan Economo GigaScience, 2022, 11, ⟨10.1093/gigascience/giac065⟩ Article dans une revue hal-03873057v1
	Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients Guille Peguero , Miquel Ferrín , Jordi Sardans , Erik Verbruggen , Irene Ramírez-Rojas Ecology, In press, ⟨10.6084/m9.figshare.16615873.v1⟩ Article dans une revue hal-03411548v1
	Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis Paula Arribas , Carmelo Andújar , Martin Bidartondo , Kristine Bohmann , Éric Coissac Molecular Ecology, 2021, 30 (5), pp.1120-1135. ⟨10.1111/mec.15797⟩ Article dans une revue hal-03358499v1
	Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments Julian Donald , Jérôme Murienne , Jérôme Chave , Amaia Iribar , Eliane Louisanna Global Ecology and Conservation, 2021, 29, pp.e01724. ⟨10.1016/j.gecco.2021.e01724⟩ Article dans une revue hal-03282383v1
	Cascading effects of moth outbreaks on subarctic soil food webs Irene Calderón-Sanou , Tamara Münkemüller , Lucie Zinger , Heidy Schimann , Nigel Gilles Yoccoz Scientific Reports, 2021, 11 (1), pp.15054. ⟨10.1038/s41598-021-94227-z⟩ Article dans une revue hal-03346467v1
	From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices? Irene Calderón‐sanou , Tamara Münkemüller , Frédéric Boyer , Lucie Zinger , Wilfried Thuiller Journal of Biogeography, 2020, 47 (1), pp.193-206. ⟨10.1111/jbi.13681⟩ Article dans une revue hal-02324167v1
	Sharing and reporting benefits from biodiversity research Emily Marden , Richard Abbott , Frederic Austerlitz , Daniel Ortiz‐barrientos , Regina Baucom Molecular Ecology, 2020, 30 (5), pp.1103-1107. ⟨10.1111/mec.15702⟩ Article dans une revue hal-02993811v1
	Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest Caroline Birer , Corrie Moreau , Niklas Tysklind , Lucie Zinger , Christophe Duplais Molecular Ecology, 2020, 29 (7), pp.1372-1385. ⟨10.1111/mec.15400⟩ Article dans une revue hal-02936020v1
	Altered trophic interactions in warming climates: consequences for predator diet breadth and fitness Elvire Bestion , Andrea Soriano-Redondo , Julien Cucherousset , Staffan Jacob , Joël White Proceedings of the Royal Society B: Biological Sciences, 2019, 286 (1914), pp.20192227. ⟨10.1098/rspb.2019.2227⟩ Article dans une revue hal-02340138v1
	Body size determines soil community assembly in a tropical forest Zinger Lucie , Pierre Taberlet , Heidy Schimann , Aurélie Bonin , Frédéric Boyer Molecular Ecology, 2019, 28 (3), pp.528-543. ⟨10.1111/mec.14919⟩ Article dans une revue hal-02079020v1
	Multi‐trophic β‐diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions Camille Martinez‐almoyna , Wilfried Thuiller , Loïc Chalmandrier , Marc Ohlmann , Arnaud Foulquier Functional Ecology, 2019, 33 (10), pp.2053-2064. ⟨10.1111/1365-2435.13393⟩ Article dans une revue hal-02276279v1
	DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions Lucie Zinger , Aurélie Bonin , Inger Alsos , Miklós Bálint , Holly Bik Molecular Ecology, 2019, 28 (8), pp.1857-1862. ⟨10.1111/mec.15060⟩ Article dans une revue hal-02375694v1
	Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest Guilhem Sommeria‐klein , Lucie Zinger , Eric Coissac , Amaia Iribar , Heidy Schimann Molecular Ecology Resources, 2019, ⟨10.1111/1755-0998.13109⟩ Article dans une revue hal-02402988v1
	Global Trends in Marine Plankton Diversity across Kingdoms of Life Federico Ibarbalz , Nicolas Henry , Manoela Brandão , Severine Martini , Greta Busseni Cell, 2019, 179 (5), pp.1084-1097.e21. ⟨10.1016/j.cell.2019.10.008⟩ Article dans une revue hal-03094778v1
	One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies Emmanuel Corse , Christelle Tougard , Gaït Archambaud‐suard , Jean‐françois Agnèse , Françoise Messu Mandeng Ecology and Evolution, 2019, 9 (8), pp.4603-4620. ⟨10.1002/ece3.5063⟩ Article dans une revue hal-02109732v1
	Environmental and biotic drivers of soil microbial β‐diversity across spatial and phylogenetic scales Loïc Chalmandrier , Johan Pansu , Lucie Zinger , Frédéric Boyer , Eric Coissac Ecography, 2019, 42 (12), pp.2144 - 2156. ⟨10.1111/ecog.04492⟩ Article dans une revue hal-03032726v1
	Mapping the imprint of biotic interactions on β-diversity Ohlmann Marc , Mazel Florent , Chalmandrier Loic , Bec Stephane , Coissac Eric Ecology Letters, 2018, 21 (11), pp.1660-1669 Article dans une revue hal-01983428v1
	Mapping the imprint of biotic interactions on β-diversity Marc Ohlmann , Florent Mazel , Loïc Chalmandrier , Stéphane Bec , Eric Coissac Ecology Letters, 2018, 21 (11), pp.1660-1669. ⟨10.1111/ele.13143⟩ Article dans une revue hal-03750500v1
	Ubiquitous abundance distribution of non-dominant plankton across the global ocean Enrico Ser-Giacomi , Lucie Zinger , Shruti Malviya , Colomban de Vargas , Eric Karsenti Nature Ecology & Evolution, 2018, 2 (8), pp.1243-1249. ⟨10.1038/s41559-018-0587-2⟩ Article dans une revue hal-02364756v1
	Vector soup : high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding Arthur Kocher , Jean-Charles Gantier , Pascal Gaborit , Lucie Zinger , Helene Holota Molecular Ecology Resources, 2017, 17 (2), pp.172-182. ⟨10.1111/1755-0998.12556⟩ Article dans une revue hal-01603943v1
	Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals Arthur Kocher , Benoît de Thoisy , Francois Catzeflis , Maïlis Huguin , Sophie Valière Methods in Ecology and Evolution, 2017, 8 (10), pp.1276 - 1283. ⟨10.1111/2041-210X.12729⟩ Article dans une revue hal-01836328v1
	Comparative analysis of DNA extraction methods to study the body surface microbiota of insects: A case study with ant cuticular bacteria Caroline Birer , Niklas Tysklind , Lucie Zinger , Christophe Duplais Molecular Ecology Resources, 2017, 17 (6), pp.e34-e45. ⟨10.1111/1755-0998.12688⟩ Article dans une revue hal-02105817v1
	Climate warming reduces gut microbiota diversity in a vertebrate ectotherm Elvire Bestion , Staffan Jacob , Lucie Zinger , Lucie Di Gesu , Murielle Richard Nature Ecology & Evolution, 2017, 1 (6), pp.0161. ⟨10.1038/s41559-017-0161⟩ Article dans une revue hal-01628046v1
	Using metabarcoding to reveal and quantify plant-pollinator interactions. André Pornon , Nathalie Escaravage , Monique Burrus , Hélène Holota , Aurélie Khimoun Scientific Reports, 2016, 6, pp.27282. ⟨10.1038/srep27282⟩ Article dans une revue hal-01333538v1
	Coalescing molecular evolution and DNA barcoding Lucie Zinger , Herve Philippe Molecular Ecology, 2016, 25 (9), pp.1908-1910. ⟨10.1111/mec.13639⟩ Article dans une revue hal-02962354v1
	Contrasting microbial biogeographical patterns between anthropogenic subalpine grasslands and natural alpine grasslands Roberto A. Geremia , Mihai Pușcaș , Lucie Zinger , Jean-Marc Bonneville , Philippe Choler New Phytologist, 2016, 209 (3), pp.1196 - 1207. ⟨10.1111/nph.13690⟩ Article dans une revue hal-01886752v1
	Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA Lucie Zinger , Jérôme Chave , Eric Coissac , Amaia Iribar , Eliane Louisanna Soil Biology and Biochemistry, 2016, 96, pp.16-19. ⟨10.1016/j.soilbio.2016.01.008⟩ Article dans une revue hal-01532638v1
	Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland My-Dung Jusselme , Patrick Saccone , Lucie Zinger , Mathieu Faure , Xavier Le Roux Soil Biology and Biochemistry, 2016, 92, pp.27-37. ⟨10.1016/j.soilbio.2015.09.013⟩ Article dans une revue hal-01688390v1
	Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA Johan Pansu , Charline Giguet-Covex , Gentile Francesco Ficetola , Ludovic Gielly , Frédéric Boyer Molecular Ecology, 2015, 24 (7), pp.1485 - 1498. ⟨10.1111/mec.13136⟩ Article dans une revue hal-01878599v1
	Landscape-scale distribution patterns of earthworms inferred from soil DNA J. Pansu , S. de Danieli , Jérémy Puissant , J.M. González , L. Gielly Soil Biology and Biochemistry, 2015, 83, pp.100-105. ⟨10.1016/j.soilbio.2015.01.004⟩ Article dans une revue hal-02603003v1
	Microbes on the Cliff: Alpine Cushion Plants Structure Bacterial and Fungal Communities Julien Roy , Cécile H. Albert , Sébastien Ibanez , P. Saccone , L. Zinger Frontiers in Microbiology, 2013, 4, pp.64. ⟨10.3389/fmicb.2013.00064⟩ Article dans une revue hal-01688202v1
	Effects of two grass species on the composition of soil fungal communities B. Mouhamadou , J. Puissant , Emmanuelle Personeni , Marie Theveniau , E. M. Kastl Biology and Fertility of Soils, 2013, 49 (8), pp.1131 - 1139. ⟨10.1007/s00374-013-0810-x⟩ Article dans une revue hal-02646208v1
	Two decades of describing the unseen majority of aquatic microbial diversity Lucie Zinger , Angélique Gobet , Thomas Pommier Molecular Ecology, 2012, 21 (8), pp.1878-1896. ⟨10.1111/j.1365-294X.2011.05362.x⟩ Article dans une revue halsde-00724641v1
	Changes in root-associated microbial communities are determined by species-specific plant growth responses to stress and disturbance Abderrahim Bouasria , Tarfa Mustafa , Francesco de Bello , Lucie Zinger , Guy Lempérière European Journal of Soil Biology, 2012, 52, pp.59-66. ⟨10.1016/j.ejsobi.2012.06.003⟩ Article dans une revue hal-03114632v1
	Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape Lucie Zinger , David P. H. Lejon , Florence Baptist , Abderrahim Bouasria , Serge Aubert PLoS ONE, 2011, 6 (5), pp.e19950. ⟨10.1371/journal.pone.0019950⟩ Article dans une revue insu-00845128v1
	Tannin impacts on microbial diversity and the functioning of alpine soils: a multidisciplinary approach F. Baptist , L. Zinger , J. C. Clement , C. Gallet , R. Guillemin Environmental Microbiology, 2008, 10 (3), pp.799-809. ⟨10.1111/j.1462-2920.2007.01504.x⟩ Article dans une revue halsde-00281689v1
	Corrigendum to “CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies” [Journal of Microbiological Methods 72 (2008) 42–53] L. Zinger , J. Gury , O. Alibeu , D. Rioux , L. Gielly Journal of Microbiological Methods, 2008, 73 (2), pp.209. ⟨10.1016/j.mimet.2008.03.001⟩ Article dans une revue halsde-00300516v1
	Exonuclease activity of proofreading DNA polymerases is at the origin of artifacts in molecular profiling studies J. Gury , L. Zinger , L. Gielly , P. Taberlet , R. A. Geremia Electrophoresis, 2008, 29 (11), pp.2437-2444. ⟨10.1002/elps.200700667⟩ Article dans une revue halsde-00300429v1
	CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies L. Zinger , J. Gury , O. Alibeu , D. Rioux , L. Gielly Journal of Microbiological Methods, 2008, 72 (1), pp.42-53. ⟨10.1016/j.mimet.2007.10.005⟩ Article dans une revue halsde-00281684v1
	Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: Toward a high-throughput method for microbial diversity studies in soil L. Zinger , J. Gury , F. Giraud , S. Krivobok , L. Gielly Microbial ecology, 2007, 54 (2), pp.203-216. ⟨10.1007/s00248-006-9151-8⟩ Article dans une revue halsde-00276491v1
	Plant chemical defense induced by a seed-eating pollinator mutualist C. Gallet , S. Ibanez , L. Zinger , F. R. Taravel , M. Trierweiler Journal of Chemical Ecology, 2007, 33 (11), pp.2078-2089. ⟨10.1007/s10886-007-9362-6⟩ Article dans une revue halsde-00293025v1

	Environmental DNA metabarcoding to investigate historic changes in biodiversity Johan Pansu , Charline Giguet-Covex , Francesco Ficetola Gentile , Ludovic Gielly , Frederic Boyer 6th. Congrès International « Barcode of Life », 2015, guelph, Canada. p. 264 Communication dans un congrès hal-01879611v1
	Spatial modelling of plant diversity from high-throughput environmental dna sequence data Angelika Studeny , Florence Forbes , Eric Coissac , Alain Viari , Celine Mercier 45èmes Journées de Statistique, Société Française de Statistique, May 2013, Toulouse, France Communication dans un congrès hal-00933699v1
	Study of calcite formation on Palaeolithic cave paintings : The case of Arcy-sur-Cure " Grande Grotte " ( 28000 BP Yvonne, France ) I. Reiche , Emilie Chalmin , M. Menu , Laurent Charlet , F. d' Orlié ISA 2006, May 2006, Québec, Canada. pp.45-54 Communication dans un congrès halsde-00452971v1
	Investigations of alteration phenomena of Palaeolithic rock art : The case of the large cave of Arcy-sur-Cure ( Yonne, France, 24000-28000 BP ) Ina Reiche , Emilie Chalmin , M. Menu , Laurent Charlet , F. d' Orlié GDCh, Jahrestagung des AK-Archäometrie, Mar 2006, Stuttgart, Germany Communication dans un congrès halsde-00452990v1
	Biotic versus abiotic calcite formation on prehistoric cave paintings: the Arcy-sur-Cure ‘Grande Grotte' (Yonne, France) case Emilie Chalmin , F. d' Orlyé , Lucie Zinger , Laurent Charlet , R. A. Geremia European Geosciences Union, Apr 2005, Vienne, Austria. pp.185-197 Communication dans un congrès halsde-00452830v1

	Metabarcoding and NGS techniques to infer pollinator-mediated interactions in plant communities Christophe Andalo , Charlène Pelizzari , Nathalie Escaravage , Monique Burrus , Lucie Zinger Joint 2014 Annual Meeting British Ecological Society and Société Française d’Ecologie, Dec 2014, Lille, France. , 2014, Joint 2014 Annual Meeting British Ecological Society and Société Française d’Ecologie Poster de conférence hal-02739491v1

	Advances and prospects of environmental DNA in neotropical rainforests Lucie Zinger , Julian Donald , Sébastien Brosse , Mailyn Adriana Gonzalez , Amaia Iribar Tropical Ecosystems in the 21st Century, 62, Academic Press, pp.331-373, 2020, Advances in Ecological Research, 978-0-12-821134-2. ⟨10.1016/bs.aecr.2020.01.001⟩ Chapitre d'ouvrage hal-02909735v1

	Variations spatio-temporelle de la microflore des sols alpins Lucie Zinger Ecologie, Environnement. Université Joseph-Fourier - Grenoble I, 2009. Français. ⟨NNT : ⟩ Thèse tel-00421411v1

Lucie Zinger

Présentation

Publications

Mountain soil multitrophic networks shaped by the interplay between habitat and pedoclimatic conditions

Molecular ecology of microbiomes in the wild: Common pitfalls, methodological advances and future directions

Spatial turnover of fungi and partner choice shape mycorrhizal networks in epiphytic orchids

A robust approach to estimate relative phytoplankton cell abundances from metagenomes

Toward global integration of biodiversity big data: a harmonized metabarcode data generation module for terrestrial arthropods

Decay of similarity across tropical forest communities: integrating spatial distance with soil nutrients

Connecting high‐throughput biodiversity inventories: Opportunities for a site‐based genomic framework for global integration and synthesis

Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments

Cascading effects of moth outbreaks on subarctic soil food webs

From environmental DNA sequences to ecological conclusions: How strong is the influence of methodological choices?

Sharing and reporting benefits from biodiversity research

Disentangling the assembly mechanisms of ant cuticular bacterial communities of two Amazonian ant species sharing a common arboreal nest

Altered trophic interactions in warming climates: consequences for predator diet breadth and fitness

Body size determines soil community assembly in a tropical forest

Multi‐trophic β‐diversity mediates the effect of environmental gradients on the turnover of multiple ecosystem functions

DNA metabarcoding—Need for robust experimental designs to draw sound ecological conclusions

Latent Dirichlet Allocation reveals spatial and taxonomic structure in a DNA‐based census of soil biodiversity from a tropical forest

Global Trends in Marine Plankton Diversity across Kingdoms of Life

One‐locus‐several‐primers: A strategy to improve the taxonomic and haplotypic coverage in diet metabarcoding studies

Environmental and biotic drivers of soil microbial β‐diversity across spatial and phylogenetic scales

Mapping the imprint of biotic interactions on β-diversity

Mapping the imprint of biotic interactions on β-diversity

Ubiquitous abundance distribution of non-dominant plankton across the global ocean

Vector soup : high-throughput identification of Neotropical phlebotomine sand flies using metabarcoding

Evaluation of short mitochondrial metabarcodes for the identification of Amazonian mammals

Comparative analysis of DNA extraction methods to study the body surface microbiota of insects: A case study with ant cuticular bacteria

Climate warming reduces gut microbiota diversity in a vertebrate ectotherm

Using metabarcoding to reveal and quantify plant-pollinator interactions.

Coalescing molecular evolution and DNA barcoding

Contrasting microbial biogeographical patterns between anthropogenic subalpine grasslands and natural alpine grasslands

Extracellular DNA extraction is a fast, cheap and reliable alternative for multi-taxa surveys based on soil DNA

Variations in snow depth modify N-related soil microbial abundances and functioning during winter in subalpine grassland

Reconstructing long-term human impacts on plant communities: an ecological approach based on lake sediment DNA

Landscape-scale distribution patterns of earthworms inferred from soil DNA

Microbes on the Cliff: Alpine Cushion Plants Structure Bacterial and Fungal Communities

Effects of two grass species on the composition of soil fungal communities

Two decades of describing the unseen majority of aquatic microbial diversity

Changes in root-associated microbial communities are determined by species-specific plant growth responses to stress and disturbance

Contrasting Diversity Patterns of Crenarchaeal, Bacterial and Fungal Soil Communities in an Alpine Landscape

Tannin impacts on microbial diversity and the functioning of alpine soils: a multidisciplinary approach

Corrigendum to “CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies” [Journal of Microbiological Methods 72 (2008) 42–53]

Exonuclease activity of proofreading DNA polymerases is at the origin of artifacts in molecular profiling studies

CE-SSCP and CE-FLA, simple and high-throughput alternatives for fungal diversity studies

Improvements of polymerase chain reaction and capillary electrophoresis single-strand conformation polymorphism methods in microbial ecology: Toward a high-throughput method for microbial diversity studies in soil

Plant chemical defense induced by a seed-eating pollinator mutualist

Environmental DNA metabarcoding to investigate historic changes in biodiversity

Spatial modelling of plant diversity from high-throughput environmental dna sequence data

Study of calcite formation on Palaeolithic cave paintings : The case of Arcy-sur-Cure " Grande Grotte " ( 28000 BP Yvonne, France )

Investigations of alteration phenomena of Palaeolithic rock art : The case of the large cave of Arcy-sur-Cure ( Yonne, France, 24000-28000 BP )

Biotic versus abiotic calcite formation on prehistoric cave paintings: the Arcy-sur-Cure ‘Grande Grotte' (Yonne, France) case

Metabarcoding and NGS techniques to infer pollinator-mediated interactions in plant communities

Advances and prospects of environmental DNA in neotropical rainforests

Variations spatio-temporelle de la microflore des sols alpins