CV Accueil - Archive ouverte HAL

	Long-Term Anthropogenic Management and Associated Loss of Plant Diversity Deeply Impact Virome Richness and Composition of Poaceae Communities François Maclot , Virginie Debue , Carolyn M Malmstrom , Denis Filloux , Philippe Roumagnac Microbiology Spectrum, In press, ⟨10.1128/spectrum.04850-22⟩ Article dans une revue hal-04061715v1
	Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies Johan Rollin , Rachelle Bester , Yves Brostaux , Kadriye Caglayan , Kris de Jonghe PeerJ, 2023, 11, pp.e15816. ⟨10.7717/peerj.15816⟩ Article dans une revue hal-04185674v1
	Going beyond consensus genome sequences: an innovative SNP-based methodology reconstructs different Uganda cassava brown streak virus haplotypes at a nationwide scale in Rwanda. Chantal Nyirakanani , Lucie Tamisier , Jean Pierre Bizimana , Johan Rollin , Athanase Nduwumuremyi Virus Evolution, inPress, ⟨10.1093/ve/vead053⟩ Article dans une revue hal-04193124v1
	Looking beyond virus detection in RNA sequencing data: Lessons learned from a community-based effort to detect cellular plant pathogens and pests Annelies Haegeman , Yoika Foucart , Kris de Jonghe , Thomas Goedefroit , Maher Al Rwahnih Plants, 2023, 12 (11), pp.2139. ⟨10.3390/plants12112139⟩ Article dans une revue hal-04117624v1
	Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description Benedicte Lebas , Ian Adams , Maher Al Rwahnih , Steve Baeyen , Guillaume J. Bilodeau EPPO Bulletin, 2022, 52 (2), pp.394-418. ⟨10.1111/epp.12863⟩ Article dans une revue hal-03753454v1
	Detection of Banana Mild Mosaic Virus in Musa In Vitro Plants: High-Throughput Sequencing Presents Higher Diagnostic Sensitivity Than (IC)-RT-PCR and Identifies a New Betaflexiviridae Species Marwa Hanafi , Wei Rong , Lucie Tamisier , Chadi Berhal , Nicolas Roux Plants, 2022, 11 (2), pp.226. ⟨10.3390/plants11020226⟩ Article dans une revue hal-04107139v1
	Concurrent evolution of resistance and tolerance to potato virus Y in Capsicum annuum revealed by genome‐wide association Lucie Tamisier , Marion Szadkowski , Gregory Girardot , Caroline Djian-Caporalino , Alain Palloix Molecular Plant Pathology, 2022, 23, pp.254-264. ⟨10.1111/mpp.13157⟩ Article dans une revue hal-03418676v1
	Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests Sebastien Massart , Ian Adams , Al Rwahnih , Steve Baeyen , Guillaume J Bilodeau Peer Community Journal, 2022, 2, pp.e62. ⟨10.24072/pci.infections.100002⟩ Article dans une revue hal-03915292v1
	A Survey Using High-Throughput Sequencing Suggests That the Diversity of Cereal and Barley Yellow Dwarf Viruses Is Underestimated Merike Sõmera , Sébastien Massart , Lucie Tamisier , Pille Sooväli , Kanitha Sathees Frontiers in Microbiology, 2021, 12, ⟨10.3389/fmicb.2021.673218⟩ Article dans une revue hal-04107128v1
	Identification, molecular and biological characterization of two novel secovirids in wild grass species in Belgium François Maclot , Virginie Debue , Arnaud Blouin , Núria Fontdevila Pareta , Lucie Tamisier Virus Research, 2021, 298, pp.198397. ⟨10.1016/j.virusres.2021.198397⟩ Article dans une revue hal-03239259v1
	A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses Denis Kutnjak , Lucie Tamisier , Ian Adams , Neil Boonham , Thierry T. Candresse Microorganisms, 2021, 9 (4), pp.841. ⟨10.3390/microorganisms9040841⟩ Article dans une revue hal-03200602v1
	Molecular and biological characterization of a new mulberry idaeovirus Kahraman Gürcan , Sibel Turan , Saffet Teber , İlyas Kılınçer , İbrahim Uz Virus Research, 2021, 298, pp.198411. ⟨10.1016/j.virusres.2021.198411⟩ Article dans une revue hal-04107143v1
	Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection Lucie Tamisier , Annelies Haegeman , Yoika Foucart , Nicolas Fouillien , Maher Al Rwahnih Peer Community Journal, 2021, 1, pp.e53. ⟨10.24072/pcjournal.62⟩ Article dans une revue hal-04107125v1
	Complete Sequence, Genome Organization and Molecular Detection of Grapevine Line Pattern Virus, a New Putative Anulavirus Infecting Grapevine Toufic Elbeaino , Levente Kontra , Emese Demian , Nikoletta Jaksa-Czotter , Amani Ben Slimen Viruses, 2020, 12 (6), pp.602. ⟨10.3390/v12060602⟩ Article dans une revue hal-04107148v1
	Sixty years after the first description: Genome sequence and biological characterization of European wheat striate mosaic virus infecting cereal crops Merike Sõmera , Anders Kvarnheden , Cecile Desbiez , Dag-Ragnar Blystad , Pille Sooväli Phytopathology, 2020, 110, pp.68-79. ⟨10.1094/PHYTO-07-19-0258-FI⟩ Article dans une revue hal-02619429v1
	Identification of Divergent Isolates of Banana Mild Mosaic Virus and Development of a New Diagnostic Primer to Improve Detection Marwa Hanafi , Rachid Tahzima , Sofiene Ben Kaab , Lucie Tamisier , Nicolas Roux Pathogens, 2020, 9 (12), pp.1045. ⟨10.3390/pathogens9121045⟩ Article dans une revue hal-04107146v1
	Genome-wide association mapping of QTLs implied in potato virus Y population sizes in pepper: evidence for widespread resistance QTL pyramiding. Lucie Tamisier , Marion Szadkowski , Ghislaine Nemouchi , Véronique Lefebvre , Emmanuel Szadkowski Molecular Plant Pathology, 2020, 21 (1), pp.03-16. ⟨10.1111/mpp.12874⟩ Article dans une revue hal-02315849v2
	Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants Elsa Rousseau , Lucie Tamisier , Frédéric Fabre , Vincent Simon , Marion Szadkowski Molecular Plant Pathology, 2018, 19 (12), pp.2575-2589. ⟨10.1111/mpp.12730⟩ Article dans une revue hal-01953902v1
	No inbreeding depression in laboratory-reared individuals of the parasitoid wasp Allotropa burrelli Bastien Quaglietti , Lucie Tamisier , Geraldine Groussier , Alexandre Fleisch , Isabelle Le Goff Ecology and Evolution, 2017, 7 (3), pp.964 - 973. ⟨10.1002/ece3.2643⟩ Article dans une revue hal-01508169v1
	Ecological and sanitary impacts of bacterial communities associated to biological invasions in African commensal rodent communities C. Lippens , Christophe Diagne , Maxime Galan , Lucie Tamisier , Jonathan D’ambrosio Scientific Reports, 2017, 7 (1), art. 14995 [11 p.]. ⟨10.1038/s41598-017-14880-1⟩ Article dans une revue hal-01792669v1
	Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation Lucie Tamisier , Elsa Rousseau , Sebastien Barraillé , Ghislaine Nemouchi , Marion Szadkowski Journal of General Virology, 2017, 98 (7), pp.1923 - 1931. ⟨10.1099/jgv.0.000835⟩ Article dans une revue hal-01571391v1
	16S rRNA amplicon sequencing for épidémiologie surveys of bacteria in wildlife Maxime Galan , Maria Razzauti , Emilie Bard , Maria Bernard , Carine Brouat mSystems, 2016, 1 (4), pp.1-22. ⟨10.1128/mSystems.00032-16⟩ Article dans une revue hal-01595274v1

	Virus evolution faced to multiple host targets: The potyvirus—pepper case study Lucie Tamisier , Severine Lacombe , Carole Caranta , Jean-Luc Gallois , Benoît Moury Esteban Domingo; Peter Schuster; Santiago F. Elena; Celia Perales. Viral fitness and evolution. Population dynamics and adaptive mechanisms, 439, Springer International Publishing, pp.121-138, 2023, Current Topics in Microbiology and Immunology, 978-3-031-15639-7. ⟨10.1007/978-3-031-15640-3_3⟩ Chapitre d'ouvrage hal-03929799v1
	Peut-on prédire la durabilité des résistances ? Le cas des virus Benoît Moury , Lucie Tamisier , Frédéric Fabre , Loup Rimbaud L'immunité des plantes. Pour des cultures résistantes aux maladies, Editions Quae, 2021, 9782759232338 Chapitre d'ouvrage hal-03131044v1

	Robustesse de l'immunité du piment à Phytophthora capsici face à une perturbation thermique William Billaud , Thibaud Jayet , Valentin Ribaut , Lucie Tamisier , Anne Massire 13. Rencontres de Phytopathologie - Mycologie, Sep 2022, Aussois (France), France. 1p Communication dans un congrès hal-04133317v1
	Potato virus Y adaptation to various resistance QTL combinations in pepper and impact on host tolerance Thibaud Jayet , William Billaud , Lucie Tamisier , Marion Szadkowski , Catherine Wipf-Scheibel 15. International symposium of plant virus epidemiology, Consejo Superior de Investigaciones Científicas, Madrid, spain, Jun 2022, Madrid, Spain Communication dans un congrès hal-03689572v1
	Change of paradigm for breeding disease resistant cultivars robust to varying environments: estimators of the robustness of plant immunity and promising genes for the future William Billaud , Thibaud Jayet , Valentin Ribaut , Lucie Tamisier , Anne Massire European Scientific Conference – Towards Pesticide Free Agriculture “What research to meet the pesticides reduction objectives embedded in the European Green Deal?”, French Research Institute for Agriculture, Food and Environment (INRAE), Jun 2022, Dijon, France Communication dans un congrès hal-03737211v1
	Experimental evolution of a plant RNA virus: a warning about spurious correlations when studying fitness changes Lucie Tamisier , Frédéric Fabre , Marion Szadkowski , Ghislaine Nemouchi , Gregory Girardot 18. Rencontres de virologie végétale (RVV 2021), INRAE; CIRAD, Sep 2021, Aussois, France Communication dans un congrès hal-03553147v1
	Potato virus Y adaptation to various resistance QTL combinations in pepper and impact on host tolerance Thibaud Jayet , William Billaud , Lucie Tamisier , Marion Szadkowski , Catherine Wipf-Scheibel 18. Rencontres de virologie végétale (RVV2021), Cirad; Inrae, Sep 2021, Aussois, France Communication dans un congrès hal-03368394v1
	Genome-wide association mapping of loci implied in Potato virus Y resistance and tolerance in the pepper germplasm Lucie Tamisier , Ghislaine Nemouchi , Marion Szadkowski , Gregory Girardot , Renaud Duboscq 17. Rencontres de Virologie Végétale (RVV 2019), Jan 2019, Aussois, France. 127 p Communication dans un congrès hal-02734804v1
	Experimental evolution of Barley yellow dwarf virus in cultivated and wild Poaceae species Lucie Tamisier , Catherine Colson , François Maclot , Peipei Zhang , Frederic Francis 17e Rencontres de virologie végétale, Jan 2019, Aussois (France), France Communication dans un congrès hal-04315120v1
	Within-plant genetic drift to control virus adaptation Lucie Tamisier , Ghislaine Nemouchi , Marion Szadkowski , Gregory Girardot , Frédéric Fabre 5. Conférence Jacques Monod, Évolution virale sur le continuum mutualiste – parasite, Oct 2019, Roscoff, France Communication dans un congrès hal-03553334v1
	Genome-wide association mapping of loci involved in Potato virus Y resistance and tolerance in pepper germplasm Lucie Tamisier , Ghislaine Nemouchi , Marion Szadkowski , Véronique Lefebvre , Emmanuel Szadkowski 17. Eucarpia Meeting on Genetics and Breeding of Capsicum and Eggplant (2019), Centre Technique Interprofessionnel des Fruits et Légumes (CTIFL). FRA.; Terralia. FRA.; Groupe d'Etude et de Contrôle des Variétés et des Semences (GEVES). FRA., Sep 2019, Avignon, France. 263 p Communication dans un congrès hal-02734819v1
	Taking control of virus adaptation by choosing host plant genotype Benoît Moury , Frédéric Fabre , Elsa Rousseau , Lucie Tamisier 2. Joint Congress on Evolutionary Biology (EVOLUTION 2018), European Society of Evolutionnary Biology (ESEB). INT., Aug 2018, Montpellier, France. 39 p Communication dans un congrès hal-02787082v1
	Impact of selection, genetic drift and viral accumulation on the evolution of a plant RNA virus Lucie Tamisier , Gregory Girardot , Ghislaine Nemouchi , Marion Szadkowski , Alain Palloix 16. Rencontres de Virologie Végétale (RVV 2017), Centre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD). FRA., Jan 2017, Aussois, France. 137 p Communication dans un congrès hal-01606407v1
	Quantitative trait loci in pepper genome control the effective population size of two RNA viruses at inoculation Lucie Tamisier , Elsa Rousseau , Sebastien Barraillé , Ghislaine Nemouchi , Marion Szadkowski 16. Eucarpia Capsicum and Eggplant meeting, Szent István University. Gödöllo, HUN., Sep 2016, Kecskemét, Hungary. 591 p Communication dans un congrès hal-02738767v1
	Impact of selection, genetic drift and viral accumulation on the evolution of a plant RNA virus Lucie Tamisier , Gregory Girardot , Ghislaine Nemouchi , Marion Szadkowski , Alain Palloix 13. International plant virus epidemiology symposium, Jun 2016, Avignon, France. 165 p Communication dans un congrès hal-02739150v1
	Rôle des parasites dans le succès d’invasion : approche corrélative sur deux communautés parasitaires dans le contexte de l’invasion de Mus musculus domesticus au Sénégal Christophe Amidi Diagne , Lucie Tamisier , Khalilou Ba , Nathalie Charbonnel , Jean-Francois J.-F. Cosson 12th African Small mammals Symposium, Apr 2015, Mantasoa, Madagascar Communication dans un congrès hal-02800359v1
	Utilisation de la métagénomique 16S pour la surveillance de l’émergence de zoonoses bactériennes dans les populations animales Maxime Galan , Maria Razzauti Sanfeliu , Khalilou Bâ , Emilie Bard , Maria Bernard Troisième Colloque de Génomique Environnementale, Oct 2015, Montpellier, France Communication dans un congrès hal-02800485v1

	Unravelling the genetic architecture of virus quantitative pathogenicity Lucie Tamisier , Thomas Oudin , Marion Szadkowski , Pierre Mustin , Judith Hirsch 19. Rencontres de virologie végétale (RVV 2023), Jan 2023, Aussois (FR), France Poster de conférence hal-04195732v1
	Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection Lucie Tamisier , Annelies Haegeman , Yoika Foucart , Nicolas Fouillien , Maher Al Rwahnih International Advances in Plant Virology, Apr 2021, Avignon (en ligne), France Poster de conférence hal-04315151v1
	Experimental evolution of Barley yellow dwarf virus in cultivated and wild Poaceae species Lucie Tamisier , Catherine Colson , François Maclot , Frédéric Francis , Denis Baurain International Advances in Plant Virology, Oct 2019, Rome, Italy Poster de conférence hal-04315133v1

	Adaptation des populations virales aux résistances variétales et exploitation des ressources génétiques des plantes pour contrôler cette adaptation Lucie Tamisier Sciences agricoles. Université d'Avignon, 2017. Français. ⟨NNT : 2017AVIG0696⟩ Thèse tel-01753184v2

	Manipuler les forces évolutives exercées par les plantes sur les virus pour améliorer la durabilité des gènes de résistance Benoît Moury , Julie Quenouille-Lederer , Elsa Rousseau , Lucie Tamisier , Ghislaine Nemouchi 2017, pp.63-74 Autre publication scientifique hal-03553131v1

	Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection Lucie Tamisier , Annelies Haegeman , Yoika Foucart , Nicolas Fouillien , Maher Al Rwahnih 2021 Pré-publication, Document de travail hal-03369187v1

Lucie Tamisier

Présentation

Publications

Long-Term Anthropogenic Management and Associated Loss of Plant Diversity Deeply Impact Virome Richness and Composition of Poaceae Communities

Detection of single nucleotide polymorphisms in virus genomes assembled from high-throughput sequencing data: large-scale performance testing of sequence analysis strategies

Going beyond consensus genome sequences: an innovative SNP-based methodology reconstructs different Uganda cassava brown streak virus haplotypes at a nationwide scale in Rwanda.

Looking beyond virus detection in RNA sequencing data: Lessons learned from a community-based effort to detect cellular plant pathogens and pests

Facilitating the adoption of high‐throughput sequencing technologies as a plant pest diagnostic test in laboratories: A step‐by‐step description

Detection of Banana Mild Mosaic Virus in Musa In Vitro Plants: High-Throughput Sequencing Presents Higher Diagnostic Sensitivity Than (IC)-RT-PCR and Identifies a New Betaflexiviridae Species

Concurrent evolution of resistance and tolerance to potato virus Y in Capsicum annuum revealed by genome‐wide association

Guidelines for the reliable use of high throughput sequencing technologies to detect plant pathogens and pests

A Survey Using High-Throughput Sequencing Suggests That the Diversity of Cereal and Barley Yellow Dwarf Viruses Is Underestimated

Identification, molecular and biological characterization of two novel secovirids in wild grass species in Belgium

A Primer on the Analysis of High-Throughput Sequencing Data for Detection of Plant Viruses

Molecular and biological characterization of a new mulberry idaeovirus

Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

Complete Sequence, Genome Organization and Molecular Detection of Grapevine Line Pattern Virus, a New Putative Anulavirus Infecting Grapevine

Sixty years after the first description: Genome sequence and biological characterization of European wheat striate mosaic virus infecting cereal crops

Identification of Divergent Isolates of Banana Mild Mosaic Virus and Development of a New Diagnostic Primer to Improve Detection

Genome-wide association mapping of QTLs implied in potato virus Y population sizes in pepper: evidence for widespread resistance QTL pyramiding.

Impact of genetic drift, selection and accumulation level on virus adaptation to its host plants

No inbreeding depression in laboratory-reared individuals of the parasitoid wasp Allotropa burrelli

Ecological and sanitary impacts of bacterial communities associated to biological invasions in African commensal rodent communities

Quantitative trait loci in pepper control the effective population size of two RNA viruses at inoculation

16S rRNA amplicon sequencing for épidémiologie surveys of bacteria in wildlife

Virus evolution faced to multiple host targets: The potyvirus—pepper case study

Peut-on prédire la durabilité des résistances ? Le cas des virus

Robustesse de l'immunité du piment à Phytophthora capsici face à une perturbation thermique

Potato virus Y adaptation to various resistance QTL combinations in pepper and impact on host tolerance

Change of paradigm for breeding disease resistant cultivars robust to varying environments: estimators of the robustness of plant immunity and promising genes for the future

Experimental evolution of a plant RNA virus: a warning about spurious correlations when studying fitness changes

Potato virus Y adaptation to various resistance QTL combinations in pepper and impact on host tolerance

Genome-wide association mapping of loci implied in Potato virus Y resistance and tolerance in the pepper germplasm

Experimental evolution of Barley yellow dwarf virus in cultivated and wild Poaceae species

Within-plant genetic drift to control virus adaptation

Genome-wide association mapping of loci involved in Potato virus Y resistance and tolerance in pepper germplasm

Taking control of virus adaptation by choosing host plant genotype

Impact of selection, genetic drift and viral accumulation on the evolution of a plant RNA virus

Quantitative trait loci in pepper genome control the effective population size of two RNA viruses at inoculation

Impact of selection, genetic drift and viral accumulation on the evolution of a plant RNA virus

Rôle des parasites dans le succès d’invasion : approche corrélative sur deux communautés parasitaires dans le contexte de l’invasion de Mus musculus domesticus au Sénégal

Utilisation de la métagénomique 16S pour la surveillance de l’émergence de zoonoses bactériennes dans les populations animales

Unravelling the genetic architecture of virus quantitative pathogenicity

Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection

Experimental evolution of Barley yellow dwarf virus in cultivated and wild Poaceae species

Adaptation des populations virales aux résistances variétales et exploitation des ressources génétiques des plantes pour contrôler cette adaptation

Manipuler les forces évolutives exercées par les plantes sur les virus pour améliorer la durabilité des gènes de résistance

Semi-artificial datasets as a resource for validation of bioinformatics pipelines for plant virus detection