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Loïc Paulevé

23
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<https://loicpauleve.name>
<https://loicpauleve.name>

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42261
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Prédire le comportement des cellules avec la modélisation booléenne

Loïc Paulevé
Interstices, 2021
Article dans une revue hal-03206126v1
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A detailed map of coupled circadian clock and cell cycle with qualitative dynamics validation

Adrien Rougny , Loïc Paulevé , Michèle Teboul , Franck Delaunay
BMC Bioinformatics, 2021, 22 (1), pp.240. ⟨10.1186/s12859-021-04158-9⟩
Article dans une revue inserm-03228503v1
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Concurrency in Boolean networks

Thomas Chatain , Stefan Haar , Juraj Kolčák , Loïc Paulevé , Aalok Thakkar
Natural Computing, 2020, 19 (1), pp.91--109. ⟨10.1007/s11047-019-09748-4⟩
Article dans une revue hal-01893106v2
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Reconciling Qualitative, Abstract, and Scalable Modeling of Biological Networks

Loïc Paulevé , Juraj Kolčák , Thomas Chatain , Stefan Haar
Nature Communications, 2020, 11, ⟨10.1038/s41467-020-18112-5⟩
Article dans une revue hal-02518582v2
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Parameter Space Abstraction and Unfolding Semantics of Discrete Regulatory Networks

Juraj Kolčák , David Šafránek , Stefan Haar , Loïc Paulevé
Theoretical Computer Science, 2019, 765, pp.120-144. ⟨10.1016/j.tcs.2018.03.009⟩
Article dans une revue hal-01734805v1
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Algorithms for the Sequential Reprogramming of Boolean Networks

Hugues Mandon , Cui Su , Jun Pang , Soumya Paul , Stefan Haar
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2019, 16 (5), pp.1610-1619. ⟨10.1109/TCBB.2019.2914383⟩
Article dans une revue hal-02113864v1
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Reduction of Qualitative Models of Biological Networks for Transient Dynamics Analysis

Loïc Paulevé
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2018, 15 (4), pp.1167-1179. ⟨10.1109/TCBB.2017.2749225⟩
Article dans une revue hal-01580765v1
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Prediction of Mutations to Control Pathways Enabling Tumour Cell Invasion with the CoLoMoTo Interactive Notebook (Tutorial)

Nicolas Levy , Aurélien Naldi , Céline Hernandez , Gautier Stoll , Denis Thieffry
Frontiers in Physiology, 2018, 9, pp.787. ⟨10.1101/319780⟩
Article dans une revue hal-01809081v1
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The CoLoMoTo Interactive Notebook: Accessible and Reproducible Computational Analyses for Qualitative Biological Networks

Aurélien Naldi , Céline Hernandez , Nicolas Levy , Gautier Stoll , Pedro Monteiro
Frontiers in Physiology, 2018, 9, pp.n°680:1-13. ⟨10.3389/fphys.2018.00680⟩
Article dans une revue hal-01794294v2
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Computational Discovery of Dynamic Cell Line Specific Boolean Networks from Multiplex Time-Course Data

Misbah Razzaq , Loïc Paulevé , Anne Siegel , Julio Saez-Rodriguez , Jérémie Bourdon
PLoS Computational Biology, 2018, 14, pp.1-23. ⟨10.1371/journal.pcbi.1006538⟩
Article dans une revue hal-01897020v1
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Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming

Louis Fippo Fitime , Olivier F. Roux , Carito Guziolowski , Loïc Paulevé
Algorithms for Molecular Biology, 2017, 12 (1), pp.19. ⟨10.1186/s13015-017-0110-3⟩
Article dans une revue hal-01566380v1
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Non-deterministic updates of Boolean networks

Loïc Paulevé , Sylvain Sené
27th IFIP WG 1.5 International Workshop on Cellular Automata and Discrete Complex Systems (AUTOMATA 2021), 2021, Marseille, France. pp.10:1--10:16, ⟨10.4230/OASIcs.AUTOMATA.2021.10⟩
Communication dans un congrès hal-03210805v2
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Synthesis and Simulation of Ensembles of Boolean Networks for Cell Fate Decision

Stéphanie Chevalier , Vincent Noël , Laurence Calzone , Andrei Zinovyev , Loïc Paulevé
18th International Conference on Computational Methods in Systems Biology (CMSB), 2020, Online, Germany. pp.193--209, ⟨10.1007/978-3-030-60327-4_11⟩
Communication dans un congrès hal-02898849v2
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Drawing the Line: Basin Boundaries in Safe Petri Nets

Stefan Haar , Loïc Paulevé , Stefan Schwoon
CMSB 2020 - 18th International Conference on Computational Methods in Systems Biology, Sep 2020, Konstanz / Online, Germany. ⟨10.1007/978-3-030-60327-4_17⟩
Communication dans un congrès hal-02898841v1
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Synthesis of Boolean Networks from Biological Dynamical Constraints using Answer-Set Programming

Stéphanie Chevalier , Christine Froidevaux , Loïc Paulevé , Andrei Zinovyev
2019 IEEE 31st International Conference on Tools with Artificial Intelligence (ICTAI), 2019, Portland, Oregon, United States. ⟨10.1109/ICTAI.2019.00014⟩
Communication dans un congrès hal-02276921v2
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Sequential Reprogramming of Boolean Networks Made Practical

Hugues Mandon , Cui Su , Stefan Haar , Jun Pang , Loïc Paulevé
CMSB 2019 - 17th International Conference on Computational Methods in Systems Biology, Sep 2019, Trieste, France. pp.3--19, ⟨10.1007/978-3-030-31304-3_1⟩
Communication dans un congrès hal-02178917v2
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Combining Refinement of Parametric Models with Goal-Oriented Reduction of Dynamics

Stefan Haar , Juraj Kolčák , Loïc Paulevé
VMCAI 2019 - 20th International Conference on Verification, Model Checking, and Abstract Interpretation, Jan 2019, Lisbon, Portugal. pp.555-576, ⟨10.1007/978-3-030-11245-5_26⟩
Communication dans un congrès hal-01940174v1
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Boolean Networks: Beyond Generalized Asynchronicity

Thomas Chatain , Stefan Haar , Loïc Paulevé
AUTOMATA 2018 - 24th IFIP WG 1.5 International Workshop on Cellular Automata and Discrete Complex Systems, Jun 2018, Ghent, Belgium. pp.29-42, ⟨10.1007/978-3-319-92675-9_3⟩
Communication dans un congrès hal-01768359v2
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Goal-Driven Unfolding of Petri Nets

Thomas Chatain , Loïc Paulevé
28th International Conference on Concurrency Theory (CONCUR 2017), Sep 2017, Berlin, Germany. ⟨10.4230/LIPIcs.CONCUR.2017.14⟩
Communication dans un congrès hal-01392203v2
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Pint: A Static Analyzer for Transient Dynamics of Qualitative Networks with IPython Interface

Loïc Paulevé
CMSB 2017 - 15th conference on Computational Methods for Systems Biology, Sep 2017, Darmstadt, Germany. pp.370 - 316, ⟨10.1007/978-3-319-67471-1_20⟩
Communication dans un congrès hal-01589248v1
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Temporal Reprogramming of Boolean Networks

Hugues Mandon , Stefan Haar , Loïc Paulevé
CMSB 2017 - 15th conference on Computational Methods for Systems Biology, Sep 2017, Darmstadt, Germany. pp.179 - 195, ⟨10.1007/978-3-319-67471-1_11⟩
Communication dans un congrès hal-01589251v1
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Analyse statique des réseaux booléens

Loïc Paulevé , Adrien Richard
Emmanuel Jeandel; Laurent Vigneron. Informatique Mathématique, Une photographie en 2018, CNRS Éditions, pp.157-194, 2018, 978-2-271-11974-2
Chapitre d'ouvrage hal-01753101v1