Lionel Spinelli

Sebastien Choteau, Audrey Wagner, Philippe Pierre, Lionel Spinelli, Christine Brun. MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses. Database - The journal of Biological Databases and Curation, Oxford University Press, 2021, 2021, ⟨10.1093/database/baab032⟩. ⟨hal-03268485⟩

Milesa Simic, Iris Manosalva, Lionel Spinelli, Rebecca Gentek, Raheleh Shayan, et al.. Distinct Waves from the Hemogenic Endothelium Give Rise to Layered Lymphoid Tissue Inducer Cell Ontogeny. Cell Reports, Elsevier Inc, 2020, 32 (6), pp.108004. ⟨10.1016/j.celrep.2020.108004⟩. ⟨inserm-02915324⟩

Camille Wagner, Johnny Bonnardel, Clément da Silva, Lionel Spinelli, Cynthia Arroyo Portilla, et al.. Differentiation Paths of Peyer’s Patch LysoDCs Are Linked to Sampling Site Positioning, Migration, and T Cell Priming. Cell Reports, Elsevier Inc, 2020, 31 (1), pp.107479. ⟨10.1016/j.celrep.2020.03.043⟩. ⟨hal-02980979⟩

Noudjoud Attaf, Inaki Cervera-Marzal, Chuang Dong, Laurine Gil, Amédée Renand, et al.. FB5P-seq: FACS-Based 5-Prime End Single-Cell RNA-seq for Integrative Analysis of Transcriptome and Antigen Receptor Repertoire in B and T Cells. Frontiers in Immunology, Frontiers, 2020, 11, pp.216. ⟨10.3389/fimmu.2020.00216⟩. ⟨inserm-02561110⟩

Alicia Bellomo, Isabelle Mondor, Lionel Spinelli, Marine Lagueyrie, Benjamin Stewart, et al.. Reticular Fibroblasts Expressing the Transcription Factor WT1 Define a Stromal Niche that Maintains and Replenishes Splenic Red Pulp Macrophages. Immunity, Elsevier, 2020, 53 (1), pp.127 - 142.e7. ⟨10.1016/j.immuni.2020.06.008⟩. ⟨hal-03013466⟩

Diogo Ribeiro, Galadriel Briere, Benoit Bely, Lionel Spinelli, Christine Brun. MoonDB 2.0: an updated database of extreme multifunctional and moonlighting proteins. Nucleic Acids Research, Oxford University Press, 2019, ⟨10.1093/nar/gky1039⟩. ⟨hal-01907669⟩

Andreas Zanzoni, Lionel Spinelli, Diogo Ribeiro, Gian Gaetano Tartaglia, Christine Brun. Post-transcriptional regulatory patterns revealed by protein-RNA interactions. Scientific Reports, Nature Publishing Group, 2019, 9 (1), pp.4302. ⟨10.1038/s41598-019-40939-2⟩. ⟨hal-02070124⟩

Sarvenaz Choobdar, Mehmet Ahsen, Jake Crawford, Mattia Tomasoni, Tao Fang, et al.. Assessment of network module identification across complex diseases. Nature Methods, Nature Publishing Group, 2019, 16 (9), pp.843-852. ⟨10.1038/s41592-019-0509-5⟩. ⟨hal-02333148⟩

Adeline Crinier, Pierre Milpied, Bertrand Escaliere, Christelle Piperoglou, Justine Galluso, et al.. High-Dimensional Single-Cell Analysis Identifies Organ-Specific Signatures and Conserved NK Cell Subsets in Humans and Mice.. Immunity, Elsevier, 2018, 49 (5), pp.971--986.e5. ⟨10.1016/j.immuni.2018.09.009⟩. ⟨hal-02086845⟩

Diogo Ribeiro, Andreas Zanzoni, Andrea Cipriano, Riccardo Delli ponti, Lionel Spinelli, et al.. Protein complex scaffolding predicted as a prevalent function of long non-coding RNAs. Nucleic Acids Research, Oxford University Press, 2018, ⟨10.1093/nar/gkx1169⟩. ⟨hal-01644177⟩

Pierre Milpied, Iñaki Cervera-Marzal, Marie-Laure Mollichella, Bruno Tesson, Gabriel Brisou, et al.. Human germinal center transcriptional programs are de-synchronized in B cell lymphoma. Nature Immunology, Nature Publishing Group, 2018, 19 (9), pp.1013 - 1024. ⟨10.1038/s41590-018-0181-4⟩. ⟨hal-01858136⟩

Jessica Perego, Andreia Mendes, Clarisse Bourbon, Voahirana Camosseto, Alexis Combes, et al.. Guanabenz inhibits TLR9 signaling through a pathway that is independent of eIF2α dephosphorylation by the GADD34/PP1c complex. Science Signaling, American Association for the Advancement of Science, 2018, 11 (514), pp.eaam8104. ⟨10.1126/scisignal.aam8104⟩. ⟨hal-02086881⟩

Johannes Bischof, Marilyne Duffraisse, Edy Furger, Leiore Ajuria, Guillaume Giraud, et al.. Generation of a versatile BiFC ORFeome library for analyzing protein-protein interactions in live Drosophila. eLife, eLife Sciences Publication, 2018, 7, ⟨10.7554/eLife.38853⟩. ⟨hal-01882683⟩

Andreas Zanzoni, Lionel Spinelli, Shérazade Braham, Christine Brun. Perturbed human sub-networks by Fusobacterium nucleatum candidate virulence proteins. Microbiome, BioMed Central, 2017, 5 (1), pp.89. ⟨10.1186/s40168-017-0307-1⟩. ⟨hal-01580138⟩

Alexandre Dalet, Rafael J Argüello, Alexis Combes, Lionel Spinelli, Sebastien Jaeger, et al.. Protein synthesis inhibition and GADD34 control IFN‐β heterogeneous expression in response to dsRNA. EMBO Journal, EMBO Press, 2017, 36 (6), pp.761 - 782. ⟨10.15252/embj.201695000⟩. ⟨hal-01476255⟩

Perego Jessica, Clarisse Bourbon, Lionel Chasson, Caroline Laprie, Lionel Spinelli, et al.. Guanabenz prevents D-galactosamine/LPS-induced liver damage and mortality. Frontiers in Immunology, Frontiers, 2017, 8, ⟨10.3389/fimmu.2017.00679⟩. ⟨hal-01533164⟩

Romain Fenouil, Nicolas Descostes, Lionel Spinelli, Frederic Koch, Muhammad Ahmad Maqbool, et al.. Pasha: a versatile R package for piling chromatin HTS data. Bioinformatics, Oxford University Press (OUP), 2016, 32 (16), pp.2528 - 2530. ⟨10.1093/bioinformatics/btw206⟩. ⟨hal-01407393⟩

Elena Floriani, Ricardo Lima, Ouerdia Ourrad, Lionel Spinelli. Flux through a Markov chain. Chaos, Solitons and Fractals, Elsevier, 2016, 93, pp.136 - 146. ⟨10.1016/j.chaos.2016.10.006⟩. ⟨hal-01406815⟩

Lionel Spinelli, Sabrina Carpentier, Frederic Montañana-Sanchis, Marc Dalod, Thien-Phong Vu Manh. BubbleGUM: automatic extraction of phenotype molecular signatures and comprehensive visualization of multiple Gene Set Enrichment Analyses. BMC Genomics, BioMed Central, 2015, 16 (814), ⟨10.1186/s12864-015-2012-4⟩. ⟨hal-01236135⟩

Charles E Chapple, Benoît Robisson, Lionel Spinelli, Celine Guien, Becker Emmanuelle, et al.. Extreme multifunctional proteins identified from a human protein interaction network.. Nature Communications, Nature Publishing Group, 2015, 6 (1), pp.7412. ⟨10.1038/ncomms8412⟩. ⟨hal-01407399⟩

Nicolas Descostes, Martin Heidemann, Lionel Spinelli, Roland Schüller, Muhammad Ahmad Maqbool, et al.. Tyrosine phosphorylation of RNA polymerase II CTD is associated with antisense promoter transcription and active enhancers in mammalian cells. eLife, eLife Sciences Publication, 2014, 3, ⟨10.7554/eLife.02105⟩. ⟨hal-01431911⟩

Ilaria Nardecchia, Lionel Spinelli, Jordane Preto, Matteo Gori, Elena Floriani, et al.. Experimental detection of long-distance interactions between biomolecules through their diffusion behavior: Numerical study. Physical Review E : Statistical, Nonlinear, and Soft Matter Physics, American Physical Society, 2014, 90 (2), pp.022703. ⟨10.1103/PhysRevE.90.022703⟩. ⟨hal-01252344⟩

Lionel Spinelli, Philippe Gambette, Charles Chapple, Benoît Robisson, Anaïs Baudot, et al.. Clust&See: A Cytoscape plugin for the identification, visualization and manipulation of network clusters. BioSystems, Elsevier, 2013, 113 (2), pp.91-93. ⟨10.1016/j.biosystems.2013.05.010⟩. ⟨hal-00832028v2⟩

Roberto Franzosi, Marco Pettini, Lionel Spinelli. Topology and Phase Transitions I. Preliminary Results. Nuclear Physics B, Elsevier, 2007, 783, pp.189-218. ⟨hal-00145212⟩

Roberto Franzosi, Marco Pettini, Lionel Spinelli. Topology and Phase Transitions: Paradigmatic Evidence. Physical Review Letters, American Physical Society, 2000, 84 (13), pp.2774 - 2777. ⟨10.1103/PhysRevLett.84.2774⟩. ⟨hal-01431921⟩

Roberto Franzosi, Lapo Casetti, Lionel Spinelli, Marco Pettini. Topological aspects of geometrical signatures of phase transitions. Physical Review E , American Physical Society (APS), 1999, 60 (5), pp.R5009 - R5012. ⟨10.1103/PhysRevE.60.R5009⟩. ⟨hal-01431976⟩

R. Triay, L. Spinelli, R. Lafaye. Framework for cosmography at high redshift. Monthly Notices of the Royal Astronomical Society, Oxford University Press (OUP): Policy P - Oxford Open Option A, 1996, 279 (2), pp.564 - 570. ⟨10.1093/mnras/279.2.564⟩. ⟨hal-01431981⟩

Claudine Chaouiya, Aurélien Naldi, Lionel Spinelli, Pedro Monteiro, Duncan Berenguier, et al.. Logical modelling of cellular decision processes with GINsim. JOBIM 2012, Jul 2012, Rennes, France. ⟨hal-01261855⟩