lemoine sophie

Documents

Affiliations actuelles

397369

Contact

Domaines de recherche

Génomique, Transcriptomique et Protéomique [q-bio.GN]

Compétences

Analyse de données RNASeq (lectures courtes Illumina) Analyse de Single Cell RNASeq en lectures courtes Analyse de Single Cell RNASeq en lectures longues (ONT) Analyse de Single Cell RNASeq en lectures courtes

Publications

	Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes Jean-Baptiste Julla , Diane Girard , Marc Diedisheim , Pierre-Jean Saulnier , Bao Tran Vuong Circulation Research, 2024, 134 (2), pp.189-202. ⟨10.1161/circresaha.123.322757⟩ Article dans une revue hal-04534577v1
	Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling L. Orliaguet , T. Ejlalmanesh , A. Humbert , R. Ballaire , M. Diedisheim Nature Communications, 2022, 13 (1), pp.5089. ⟨10.1038/s41467-022-32813-z⟩ Article dans une revue hal-03770463v1
	A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity Luisa Klein , Juliette van Steenwinckel , Bobbi Fleiss , Till Scheuer , Christoph Bührer Glia, 2022, 70 (9), pp.1699-1719. ⟨10.1002/glia.24190⟩ Article dans une revue hal-04326421v1
	Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation Yannick Faulconnier , Céline Boby , Fanny Coulpier , Sophie Lemoine , Patrice Martin Comparative Biochemistry and Physiology - Part D: Genomics and Proteomics, 2022, 41, pp.100956. ⟨10.1016/j.cbd.2021.100956⟩ Article dans une revue hal-03524137v1
	The tumor microenvironment impairs Th1 IFNγ secretion through alternative splicing modifications of Irf1 pre-mRNA Antoine Bernard , Christophe Hibos , Corentin Richard , Etienne Viltard , Sandy Chevrier Cancer Immunology Research, 2021, 9 (3), pp.324-336. ⟨10.1158/2326-6066.CIR-19-0679⟩ Article dans une revue hal-03834196v1
	Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1 Serena Barilla , Ning Liang , Enrichetta Mileti , Raphaëlle Ballaire , Marie Lhomme Molecular metabolism, 2020, 42, pp.101066. ⟨10.1016/j.molmet.2020.101066⟩ Article dans une revue hal-02967944v1
	Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion Karima Drareni , Raphaëlle Ballaire , Fawaz Alzaid , Andreia Goncalves , Catherine Chollet Cell Reports, 2020, 32, pp.108141 -. ⟨10.1016/j.celrep.2020.108141⟩ Article dans une revue hal-03491495v1
	Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection Nguyen-Quang Nam , Sophie Goudey , Emmanuel Segeral , Ammara Mohammad , Sophie Lemoine Retrovirology, 2020, 17, pp.25. ⟨10.1186/s12977-020-00533-1⟩ Article dans une revue hal-02953802v1
	Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1 Serena Barilla , Ning Liang , Enrichetta Mileti , Raphaëlle Ballaire , Marie Lhomme Molecular metabolism, 2020, 42, pp.101066. ⟨10.1016/j.molmet.2020.101066⟩ Article dans une revue hal-03423023v1
	Molecular characterisation of a cellular conveyor belt in Clytia medusae Thomas Condamine , Muriel Jager , Lucas Leclère , Corinne Blugeon , Sophie Lemoine Developmental Biology, 2019, 456 (2), pp.212-225. ⟨10.1016/j.ydbio.2019.09.001⟩ Article dans une revue hal-02381895v1
	Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice Jessy Hasna , Sylvain Bohic , Sophie Lemoine , Corinne Blugeon , Alexandre Bouron Molecular Neurobiology, 2019, 56 (10), pp.6928-6940. ⟨10.1007/s12035-019-1581-7⟩ Article dans une revue hal-02090330v1
	Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination Anne-Sophie Fiorucci , Clara Bourbousse , Lorenzo Concia , Martin Rougée , Anne-Flore Deton-Cabanillas Genome Biology, 2019, 20 (100), ⟨10.1186/s13059-019-1705-4⟩ Article dans une revue hal-02156634v1
	Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes Maria Almonacid , Adel Al Jord , Stephany El-Hayek , Alice Othmani , Fanny Coulpier Developmental Cell, 2019, 51 (2), pp.145-157.e10. ⟨10.1016/j.devcel.2019.09.010⟩ Article dans une revue hal-03003444v1
	Active intermixing of indirect and direct neurons builds the striatal mosaic Andrea Tinterri , Fabien Ménardy , Marco Diana , Ludmilla Lokmane , Maryama Keita Nature Communications, 2018, 9 (1), pp.4725. ⟨10.1038/s41467-018-07171-4⟩ Article dans une revue hal-01927169v1
	Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells Katarzyna J Radomska , Fanny Coulpier , Aurelie Gresset , Alain Schmitt , Amal Debbiche Cancer Discovery, inPress, 9 (1), pp.130-147. ⟨10.1158/2159-8290.CD-18-0156⟩ Article dans une revue hal-03822481v1
	Aozan: an automated post-sequencing data-processing pipeline Sandrine Perrin , Cyril Firmo , Sophie Lemoine , Stéphane Le Crom , Laurent Jourdren Bioinformatics, 2017, 33 (14), pp.2212-2213. ⟨10.1093/bioinformatics/btx154⟩ Article dans une revue hal-03842523v1
	Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction Ivanova Christa , Ramoni Jonas , Thiziri Aouam , Frischmann Alexa , Bernhard Seiboth Biotechnology for Biofuels, 2017, 10, pp.209. ⟨10.1186/s13068-017-0897-7⟩ Article dans une revue hal-01592860v1
	Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin Aline Bonnet , Guillaume Lambert , Sylvain Ernest , François Xavier Dutrieux , Fanny Coulpier Developmental Cell, 2017, 42 (5), pp.527-541.e4. ⟨10.1016/j.devcel.2017.08.004⟩ Article dans une revue hal-03842667v1
	IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans Fawaz Alzaid , Floriane Lagadec , Miguel Albuquerque , Raphaëlle Ballaire , Lucie Orliaguet JCI Insight, 2016, 1 (20), ⟨10.1172/jci.insight.88689⟩ Article dans une revue hal-03842669v1
	Control of Plasma Membrane Permeability by ABC Transporters Svetlana Khakhina , Soraya S. Johnson , Raman Manoharlal , Sarah B. Russo , Corinne Blugeon Eukaryotic Cell, 2015, 14 (5), pp.442-453. ⟨10.1128/EC.00021-15⟩ Article dans une revue hal-01528527v1
	The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei Sara Ghassemi , Alexander Lichius , Fréderique Bidard , Sophie Lemoine , Marie‐noëlle Rossignol Molecular Microbiology, 2015, 96 (2), pp.405-418. ⟨10.1111/mmi.12944⟩ Article dans une revue hal-03842675v1
	Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae Sandra Mota , Neide Vieira , Sónia Barbosa , Thierry Delaveau , Claire Torchet PLoS ONE, 2014, 9 (11), pp.e111589. ⟨10.1371/journal.pone.0111589⟩ Article dans une revue hal-01527344v1
	High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation John Mouaikel , Sebastien Z. Causse , Mathieu Rougemaille , Yves Daubenton-Carafa , Corinne Blugeon Cell Reports, 2013, 5 (4), pp.1082-1094. ⟨10.1016/j.celrep.2013.10.013⟩ Article dans une revue hal-01528425v1
	Tye 7 regulates yeast Ty1 retrotransposon sense and sntisense transcription in response to adenylic nucleotide stress G. Servant , B. Pinson , A. Tchalikian-Cosson , F. Coulpier , S. Lemoine Nucleic Acids Research, 2012, pp.00-00 Article dans une revue hal-00703347v1
	Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress Geraldine Servant , Benoît Pinson , Aurélie Tchalikian-Cosson , Fanny Coulpier , Sophie Lemoine Nucleic Acids Research, 2012, 40 (12), pp.5271-5282. ⟨10.1093/nar/gks166⟩ Article dans une revue hal-02119179v1
	RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans. Sanjiveeni Dhamgaye , Maria Bernard , Gaëlle Lelandais , Odile Sismeiro , Sophie Lemoine BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩ Article dans une revue inserm-00733893v1
	Ploidy influences cellular responses to gross chromosomal rearrangements in saccharomyces cerevisiae Paul P. Jung , Emilie Fritsch , Corinne Blugeon , Jean-Luc Souciet , Serge Potier BMC Genomics, 2011, 12 (1), pp.331. ⟨10.1186/1471-2164-12-331⟩ Article dans une revue inserm-00617205v1
	Physiological and toxic effects of the purine intermediate 5-amino-4-imidazolecarboxamide ribonucleotide (AICAR) in yeast. H.C. Hürlimann , B. Laloo , B. Simon-Kayser , C. Saint-Marc , F. Coulpier Journal of Biological Chemistry, 2011, sous presse, pp.00-00 Article dans une revue hal-00608534v1
	An evaluation of custom microarray applications: the oligonucleotide design challenge Sophie Lemoine , Florence Combes , Stéphane Le Crom Nucleic Acids Research, 2009, 37 (6), pp.1726-39. ⟨10.1093/nar/gkp053⟩ Article dans une revue hal-02879348v1
	Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways B. Pinson , S. Vaur , I. Sagot , F. Coulpier , S. Lemoine Genes and Development, 2009, 23 (12), pp.1399-1407 Article dans une revue hal-00403264v1
	Selection of oligonucleotides for whole-genome microarrays with semi-automatic update. G. Golfier , Sophie Lemoine , A van Miltenberg , A Bendjoudi , J. Rossier Bioinformatics, 2009, 25 (1), pp.128-9. ⟨10.1093/bioinformatics/btn573⟩ Article dans une revue hal-02879352v1
	Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization Y. Saint-Georges , M. Garcia , T. Delaveau , Stéphane Le Crom , S. Lemoine PLoS ONE, 2008, pp.3(6) e2293 Article dans une revue hal-00333137v1
	Non-productive docking of mRNPs to the nuclear pore in THO/sub2 mutants M. Rougemaille , E. Kisseleva-Romanova , R. Kanthgudipati , S. Lemoine , C. Blugeon Cell, 2008, 135, pp.308-321 Article dans une revue hal-00333123v1
	Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization Yann Saint-Georges , Mathilde Garcia , Thierry Delaveau , Laurent Jourdren , Stephane Le Crom PLoS ONE, 2008, 3 (6), pp.e2293. ⟨10.1371/journal.pone.0002293⟩ Article dans une revue hal-02098526v1
	THO/Sub2p Functions to Coordinate 3′-End Processing with Gene-Nuclear Pore Association Mathieu Rougemaille , Guennaelle Dieppois , Elena Kisseleva-Romanova , Rajani Kanth Gudipati , Sophie Lemoine Cell, 2008, 135 (2), pp.308-321. ⟨10.1016/j.cell.2008.08.005⟩ Article dans une revue hal-03842689v1
	Structure and properties of transcriptional networks driving selenite stress response in yeasts Hélène Salin , Vivienne Fardeau , Eugenia Piccini , Gaelle Lelandais , Véronique Tanty BMC Genomics, 2008, 9 (1), pp.333. ⟨10.1186/1471-2164-9-333⟩ Article dans une revue hal-03842687v1
	The central role of PDR1 in the foundation of yeast drug resistance. V. Fardeau , G. Lelandais , A. Oldfield , H. Salin , S. Lemoine Journal of Biological Chemistry, 2007, 282, pp.5063-5074 Article dans une revue hal-00173044v1
	Goulphar: rapid access and expertise for standard two-color microarray normalization methods. Sophie Lemoine , Florence Combes , Nicolas Servant , Stéphane Le Crom BMC Bioinformatics, 2006, 7, pp.467. ⟨10.1186/1471-2105-7-467⟩ Article dans une revue inserm-00122139v1

	Suppression before amplification of highly abundant mRNA to profile gene expression from microdissected mammary epithelial cells Claudia Bevilacqua , Nicolas Crapart , Catherine Hue-Beauvais , B Brandao , S Lemoine qPCR dPCR & NGS 2017 - 8. international Gene Quantification Event, Apr 2017, Freising, Germany. , 2016 Poster de conférence hal-02798294v1

lemoine sophie

Domaines de recherche

Compétences

Publications

Blood Monocyte Phenotype Is A Marker of Cardiovascular Risk in Type 2 Diabetes

Early macrophage response to obesity encompasses Interferon Regulatory Factor 5 regulated mitochondrial architecture remodelling

A unique cerebellar pattern of microglia activation in a mouse model of encephalopathy of prematurity

Comparative transcriptome analysis of goat (Capra hircus) adipose tissue reveals physiological regulation of body reserve recovery after the peak of lactation

The tumor microenvironment impairs Th1 IFNγ secretion through alternative splicing modifications of Irf1 pre-mRNA

Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1

Adipocyte Reprogramming by the Transcriptional Coregulator GPS2 Impacts Beta Cell Insulin Secretion

Dynamic nanopore long-read sequencing analysis of HIV-1 splicing events during the early steps of infection

Loss of G protein pathway suppressor 2 in human adipocytes triggers lipid remodeling by upregulating ATP binding cassette subfamily G member 1

Molecular characterisation of a cellular conveyor belt in Clytia medusae

Zinc Uptake and Storage During the Formation of the Cerebral Cortex in Mice

Arabidopsis S2Lb links AtCOMPASS-like and SDG2 activity in H3K4me3 independently from histone H2B monoubiquitination

Active Fluctuations of the Nuclear Envelope Shape the Transcriptional Dynamics in Oocytes

Active intermixing of indirect and direct neurons builds the striatal mosaic

Cellular Origin, Tumor Progression, and Pathogenic Mechanisms of Cutaneous Neurofibromas Revealed by Mice with Nf1 Knockout in Boundary Cap Cells

Aozan: an automated post-sequencing data-processing pipeline

Genome sequencing and transcriptome analysis of Trichoderma reesei QM9978 strain reveals a distal chromosome translocation to be responsible for loss of vib1 expression and loss of cellulase induction

Quaking RNA-Binding Proteins Control Early Myofibril Formation by Modulating Tropomyosin

IRF5 governs liver macrophage activation that promotes hepatic fibrosis in mice and humans

Control of Plasma Membrane Permeability by ABC Transporters

The ß-importin KAP8 (Pse1/Kap121) is required for nuclear import of the cellulase transcriptional regulator XYR1, asexual sporulation and stress resistance in Trichoderma reesei

Role of the DHH1 Gene in the Regulation of Monocarboxylic Acids Transporters Expression in Saccharomyces cerevisiae

High-Frequency Promoter Firing Links THO Complex Function to Heavy Chromatin Formation

Tye 7 regulates yeast Ty1 retrotransposon sense and sntisense transcription in response to adenylic nucleotide stress

Tye7 regulates yeast Ty1 retrotransposon sense and antisense transcription in response to adenylic nucleotides stress

RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Ploidy influences cellular responses to gross chromosomal rearrangements in saccharomyces cerevisiae

Physiological and toxic effects of the purine intermediate 5-amino-4-imidazolecarboxamide ribonucleotide (AICAR) in yeast.

An evaluation of custom microarray applications: the oligonucleotide design challenge

Metabolic intermediates selectively stimulate transcription factor interaction and modulate phosphate and purine pathways

Selection of oligonucleotides for whole-genome microarrays with semi-automatic update.

Yeast mitochondrial biogenesis : a role for the PUF RNA binding protein Puf3p in mRNA localization

Non-productive docking of mRNPs to the nuclear pore in THO/sub2 mutants

Yeast Mitochondrial Biogenesis: A Role for the PUF RNA-Binding Protein Puf3p in mRNA Localization

THO/Sub2p Functions to Coordinate 3′-End Processing with Gene-Nuclear Pore Association

Structure and properties of transcriptional networks driving selenite stress response in yeasts

The central role of PDR1 in the foundation of yeast drug resistance.

Goulphar: rapid access and expertise for standard two-color microarray normalization methods.

Suppression before amplification of highly abundant mRNA to profile gene expression from microdissected mammary epithelial cells