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18

List of publications - Laurent Bréhélin


"Olivier Gascuel"   

Journal articles12 documents

  • Christophe Menichelli, Olivier Gascuel, Laurent Brehelin. Improving pairwise comparison of protein sequences with domain co-occurrence. PLoS Computational Biology, Public Library of Science, 2018, 14 (1), pp.e1005889. ⟨10.1371/journal.pcbi.1005889⟩. ⟨lirmm-01744475⟩
  • Amel Ghouila, Isabelle Florent, Fatma Zahra Guerfali, Nicolas Terrapon, Dhafer Laouini, et al.. Identification of divergent protein domains by combining HMM-HMM comparisons and co-occurrence detection. PLoS ONE, Public Library of Science, 2014, 9 (6), pp.e95275. ⟨10.1371/journal.pone.0095275⟩. ⟨pasteur-01060276⟩
  • Mathieu Lajoie, Olivier Gascuel, Vincent Lefort, Laurent Brehelin. Computational discovery of regulatory elements in a continuous expression space. Genome Biology, BioMed Central, 2012, 13 (11), pp.41. ⟨lirmm-00796453⟩
  • Nicolas Terrapon, Olivier Gascuel, Eric Marechal, Laurent Brehelin. Fitting hidden Markov models of protein domains to a target species: application to Plasmodium falciparum.. BMC Bioinformatics, BioMed Central, 2012, 13 (1), pp.67. ⟨10.1186/1471-2105-13-67⟩. ⟨hal-00701611⟩
  • Amel Ghouila, Nicolas Terrapon, Olivier Gascuel, Fatma Guerfali, Dhafer Laouini, et al.. EuPathDomains: The Divergent Domain Database for Eukaryotic Pathogens. Infection, Genetics and Evolution, Elsevier, 2011, 11 (4), pp.698-707. ⟨10.1016/j.meegid.2010.09.008⟩. ⟨lirmm-00540932⟩
  • Laurent Brehelin, Isabelle Florent, Olivier Gascuel, Eric Maréchal. Assessing Functional Annotation Transfers with Inter-Species Conserved Coexpression: Application to Plasmodium Falciparum. BMC Genomics, BioMed Central, 2010, 11 (35), pp.1471-2164. ⟨10.1186/1471-2164-11-35⟩. ⟨lirmm-00540866⟩
  • Laurent Brehelin, Isabelle Florent, Olivier Gascuel, Eric Maréchal. Assessing functional annotation transfers with inter-species conserved coexpression: application to Plasmodium falciparum.. BMC Genomics, BioMed Central, 2010, 11, pp.35. ⟨10.1186/1471-2164-11-35⟩. ⟨hal-00468687⟩
  • Isabelle Florent, Eric Maréchal, Olivier Gascuel, Laurent Brehelin. Bioinformatic strategies to provide functional clues to the unknown genes in Plasmodium falciparum genome. Parasite, EDP Sciences, 2010, 17, pp.273-283. ⟨lirmm-00544139⟩
  • Isabelle Florent, Betina M Porcel, Elodie Guillaume, Corinne da Silva, François Artiguenave, et al.. A Plasmodium Falciparum FcB1-Schizont-EST Collection Providing Clues to Schizont Specific Gene Structure and Polymorphism. BMC Genomics, BioMed Central, 2009, 10, pp.235-252. ⟨10.1186/1471-2164-10-235⟩. ⟨lirmm-00395282⟩
  • Nicolas Terrapon, Olivier Gascuel, Eric Maréchal, Laurent Brehelin. Detection of new protein domains using co-occurrence: application to Plasmodium falciparum. Bioinformatics, Oxford University Press (OUP), 2009, 25, pp.3077-83. ⟨10.1093/bioinformatics/btp560⟩. ⟨lirmm-00431171⟩
  • Laurent Brehelin, Jean-François Dufayard, Olivier Gascuel. PlasmoDraft: a database of Plasmodium falciparum gene function predictions based on postgenomic data. BMC Bioinformatics, BioMed Central, 2008, 9, pp.9:440. ⟨http://www.biomedcentral.com/1471-2105/9/440⟩. ⟨10.1186/1471-2105-9-440⟩. ⟨lirmm-00327273v2⟩
  • Laurent Brehelin, Olivier Gascuel, Olivier Martin. Using Repeated Measurements to Validate Hierarchical Gene Clusters. Bioinformatics, Oxford University Press (OUP), 2008, 24, pp.682-688. ⟨lirmm-00272116⟩

Conference papers6 documents

  • Nicolas Terrapon, Olivier Gascuel, Laurent Brehelin. Fitting Hidden Markov Models of Protein Domains to a Target Species. JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jun 2011, Paris, France. pp.193-194. ⟨lirmm-00725501⟩
  • Mathieu Lajoie, Olivier Gascuel, Laurent Brehelin. Identification of Regulatory Elements from Gene Expression Data without Clustering. JOBIM: Journées Ouvertes Biologie, Informatique, Mathématiques, Jun 2011, Paris, France. pp.89-90. ⟨lirmm-00725490⟩
  • Nicolas Terrapon, Olivier Gascuel, Laurent Brehelin. Détection de nouveaux domaines protéiques par co-occurence : Application à P. falciparum. JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.43-48. ⟨lirmm-00414954⟩
  • Laurent Brehelin, Olivier Gascuel. Bias and Benefit Induced by Intra-Species Paralogy in Guilt by Association Methods to Predict Protein Function. SMPGD'07: Statistical Methods for Post-Genomic Data, Jan 2007, Paris, France. ⟨lirmm-00195262⟩
  • Laurent Brehelin, Olivier Gascuel. GONNA: a Gene Ontology Nearest Neighbor Approach for the Functional Prediction of P.falciparum Orphan Genes. International Conference on the Bioinformatics of African Pathogens and Disease Vectors, May 2007, Nairobi, Kenya. ⟨lirmm-00195264⟩
  • Laurent Brehelin, Olivier Gascuel. Bias and benefit induced by intra-species homologies in guilt by association methods to predict protein function. JOBIM'06 : Journées ouvertes de Biologie, Informatique, Mathématiques, Jul 2006, pp.59-66. ⟨lirmm-00113353⟩