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RNA-seq data for detecting reliable SNPs & genotypes in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression !

 Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte , et al.
World Poultry Congress (WPC) 2022, Aug 2022, Paris, France
Communication dans un congrès hal-04258396v1

Autosomal Recessive Ichthyosis in Golden Retriever Dogs: Distribution and Frequency of the Pnpla1 Mutant Allele in Different Populations (chap 11)

 E. Guaguere , A. Thomas , A. Grall , E. Bourrat , L. Lagoutte , et al.
S. M. F. Torres, L. A. Frank and A. M. Hargis (eds.). Advances in Veterinary Dermatology, 7, John Wiley & Sons, 2013, ⟨10.1002/9781118644317.ch11⟩
Chapitre d'ouvrage hal-01117513v1
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Long noncoding RNAs in lipid metabolism: literature review and conservation analysis across species

 Kévin Muret , Colette Désert , Laetitia Lagoutte , Morgane Boutin , Florence Gondret , et al.
BMC Genomics, 2019, 20, pp.882. ⟨10.1186/s12864-019-6093-3⟩
Article dans une revue hal-02387579v1

Natural models for retinitis pigmentosa progressive retinal atrophy in dog breeds

 M. Bunel , G. Chaudieu , C. Hamel , L. Lagoutte , G. Manes , et al.
Human Genetics, 2019, 138 (5), pp.441-453. ⟨10.1007/s00439-019-01999-6⟩
Article dans une revue hal-02132594v1
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Watch out for a second SNP: focus on multi-nucleotide variants in coding regions and rescued stop-gained

 Fabien Degalez , Frédéric Jehl , Kévin Muret , Maria Bernard , Frédéric Lecerf , et al.
Frontiers in Genetics, 2021, 12, pp.659287. ⟨10.3389/fgene.2021.659287⟩
Article dans une revue hal-03280040v1
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Comparison of buccal and blood-derived canine DNA, either native or whole genome amplified, for array-based genome-wide association studies.

 Gonzalo Rincon , Katarina Tengvall , Janelle M. Belanger , Laetitia Lagoutte , Juan F. Medrano , et al.
BMC Research Notes, 2011, 4 (1), pp.226. ⟨10.1186/1756-0500-4-226⟩
Article dans une revue inserm-00606991v1

Canine neuropathies powerful spontaneous models for human hereditary sensory neuropathies

 S. Correard , J. Plassais , L. Lagoutte , N. Botherel , J.-L. Thibaud , et al.
Human Genetics, 2019, 138 (5), pp.455-466. ⟨10.1007/s00439-019-02003-x⟩
Article dans une revue hal-02132595v1

PNPLA1 mutations cause autosomal recessive congenital ichthyosis in golden retriever dogs and humans.

 Anaïs Grall , Eric Guaguère , Sandrine Planchais , Susanne Grond , Emmanuelle Bourrat , et al.
Nature Genetics, 2012, 44 (2), pp.140-7. ⟨10.1038/ng.1056⟩
Article dans une revue inserm-00662852v1

A Spontaneous KRT16 Mutation in a Dog Breed: A Model for Human Focal Non-Epidermolytic Palmoplantar Keratoderma (FNEPPK).

 Jocelyn Plassais , Eric Guaguère , Laetitia Lagoutte , Anne-Sophie Guillory , Caroline Dufaure de Citres , et al.
Journal of Investigative Dermatology, 2015, 135 (4), pp.1187-90. ⟨10.1038/jid.2014.526⟩
Article dans une revue hal-01116377v1
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RNA-Seq Data for Reliable SNP Detection and Genotype Calling

 Frédéric Jehl , Fabien Degalez , Frédéric Lecerf , Maria Bernard , Laetitia Lagoutte , et al.
Frontiers in Genetics, 2021, 12, pp.655707. ⟨10.3389/fgene.2021.655707⟩
Article dans une revue hal-03276149v1
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FEELnc: a tool for long non-coding RNA annotation and its application to the dog transcriptome

 Valentin Wucher , Fabrice Legeai , Benoit Hedan , Guillaume Rizk , Laëtitia Lagoutte , et al.
Nucleic Acids Research, 2017, 45 (8), pp.12. ⟨10.1093/nar/gkw1306⟩
Article dans une revue hal-01532061v1

Variant calling and genotyping accuracy of ddRAD-seq: comparison with WGS in layers

 Mathilde Doublet , Frédéric Lecerf , Fabien Degalez , Sandrine Lagarrigue , Laetitia Lagoutte , et al.
74. Annual meeting of the european federation of animal science (EAAP), Aug 2023, Lyon, France. Wageningen Academic Publishers, Book of abstracts, 29, pp.796, 2023, Book of abstracts of the 74th annual meeting of the european federation of animal science
Poster de conférence hal-04286708v1
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An integrative atlas of chicken long non-coding genes and their annotations across 25 tissues

 Frédéric Jehl , Kévin Muret , Maria Bernard , Morgane Boutin , Laetitia Lagoutte , et al.
Scientific Reports, 2020, 10 (1), pp.1-17. ⟨10.1038/s41598-020-77586-x⟩
Article dans une revue hal-03039897v1
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Chicken adaptive response to low energy diet: main role of the hypothalamic lipid metabolism revealed by a phenotypic and multi-tissue transcriptomic approach

 Frédéric Jehl , Colette Désert , Christophe C. Klopp , Mathias Brenet , Andrea Rau , et al.
BMC Genomics, 2019, 20 (1), ⟨10.1186/s12864-019-6384-8⟩
Article dans une revue hal-02463367v1
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Discovery of Human-Similar Gene Fusions in Canine Cancers

 Ronan Ulvé , Mélanie Rault , Mathieu Bahin , Laetitia Lagoutte , Jérôme Abadie , et al.
Cancer Research, 2017, 77 (21), pp.5721-5727. ⟨10.1158/0008-5472.CAN-16-2691⟩
Article dans une revue hal-01647128v1
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Characterisation and functional predictions of canine long non-coding RNAs

 Celine Le Beguec , Valentin Wucher , Laetitia Lagoutte , Edouard Cadieul , Nadine Botherel , et al.
Scientific Reports, 2018, 8 (1), pp.13444. ⟨10.1038/s41598-018-31770-2⟩
Article dans une revue hal-01888670v1

A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

 Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan , et al.
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. pp.47
Communication dans un congrès hal-04217589v1
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Gene orthology detection for long noncoding RNA (lncRNA)

 Fabien Degalez , Coralie Alain , Laetitia Lagoutte , Sandrine Lagarrigue
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.61, 2023, Abstracts
Poster de conférence hal-04217585v1
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Evidence of coat color variation sheds new light on ancient canids.

 Morgane Ollivier , Anne Tresset , Christophe Hitte , Coraline Petit , Sandrine Hughes , et al.
PLoS ONE, 2013, 8 (10), pp.e75110. ⟨10.1371/journal.pone.0075110⟩
Article dans une revue hal-00914004v1

Amy2B copy number variation reveals starch diet adaptation in ancient European dogs

 Morgane Ollivier , Anne Tresset , Fabiola Bastian , Laëtitia Lagoutte , Erik Axelsson , et al.
Royal Society Open Science, 2016, 3 (11), pp.160449. ⟨10.1098/rsos.160449⟩
Article dans une revue halshs-01418703v1

RNA-SEQ data for reliable SNP detection and genotype calling in livestock species: interest for coding variant characterization and cis-regulation analysis by allele-specific expression

 Frédéric Jehl , Fabien Degalez , Maria Bernard , Frédéric Lecerf , Laetitia Lagoutte , et al.
26. World's Poultry Congress (WPC), Aug 2022, Paris, France. pp.405
Communication dans un congrès hal-04132375v1
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A lncRNA gene-enriched atlas for GRCg7b chicken genome and its functional annotation across 47 tissues

 Fabien Degalez , Mathieu Charles , Sylvain Foissac , Haijuan Zhou , Dailu Guan , et al.
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.78, 2023, Abstracts
Poster de conférence hal-04217582v1

A Point Mutation in a lincRNA Upstream of GDNF Is Associated to a Canine Insensitivity to Pain: A Spontaneous Model for Human Sensory Neuropathies

 Jocelyn Plassais , Laetitia Lagoutte , Solenne Correard , Manon Paradis , Eric Guaguère , et al.
PLoS Genetics, 2016, 12 (12), pp.e1006482. ⟨10.1371/journal.pgen.1006482⟩
Article dans une revue hal-01439364v1
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Restriction site-associated DNA sequencing technologies as an alternative to low-density SNP chips for genomic selection: a simulation study in layer chickens

 Florian Herry , Frédéric Herault , Frédéric Lecerf , Laetitia Lagoutte , Mathilde Doublet , et al.
BMC Genomics, 2023, 24 (1), pp.271. ⟨10.1186/s12864-023-09321-5⟩
Article dans une revue hal-04131807v1
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A DOG SPONTANEOUS MODEL FOR HUMAN SENSORY NEUROPATHIES: IDENTIFICATION OF A MUTATION IN THE UPSTREAM REGION OF A NEUROTROPHIC FACTOR

 S. Correard , J. Plassais , L. Lagoutte , M. Paradis , E. Guaguere , et al.
Bulletin de l'Académie Vétérinaire de France, 2016, 21 (3), pp.289--290. ⟨10.4267/2042/61953⟩
Article dans une revue hal-01415930v1

LncRNA analysis in response to diet changes in broiler chickens

 Fabien Degalez , Coralie Alain , Laetitia Lagoutte , Sandrine Lagarrigue
39. Congress of the international society for animal genetics (ISAG), Jul 2023, Cape Town, South Africa. , pp.74, 2023, Abstracts
Poster de conférence hal-04217588v1
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