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INSYGT : a multi-genes multi-genomes browser that highlights synteny conservation in prokaryotes.

 Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Mark M. Hoebeke , Jean-François Gibrat
JOBIM 2008, Jun 2008, Lille, France. 2 p
Communication dans un congrès hal-02824485v1

Predicting the dark matter velocity distribution in galactic structures: tests against hydrodynamic cosmological simulations

 Thomas Lacroix , Arturo Núñez-Castiñeyra , Martin Stref , Julien Lavalle , Emmanuel Nezri
JCAP, 2020, 10, pp.031. ⟨10.1088/1475-7516/2020/10/031⟩
Article dans une revue hal-02628073v1

The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus

 Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset , et al.
4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada.
Poster de conférence hal-02974525v1

Anatomy of Eddington-like inversion methods in the context of dark matter searches

 Thomas Lacroix , Martin Stref , Julien Lavalle
JCAP, 2018, 09, pp.040. ⟨10.1088/1475-7516/2018/09/040⟩
Article dans une revue hal-01797132v1
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A New Integrative and Mobilizable Element Is a Major Contributor to Tetracycline Resistance in Streptococcus dysgalactiae subsp. equisimilis

 Guillem López de Egea , Aida González-Díaz , Gérard Guédon , Julie Lao , Dàmaris Berbel , et al.
Antibiotics, 2023, 12 (3), pp.579. ⟨10.3390/antibiotics12030579⟩
Article dans une revue hal-04085227v1

Evidences for different abilities of human gut bacteria to metabolise prebiotics for the benefits of the digestive health and wellness.

 Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valérie Benoit , et al.
International Scientific Association for Probiotics and Prebiotics Annual Meeting, Jun 2021, Online conference, France
Communication dans un congrès hal-04285897v1

How are trees outside forests perceived in some rural areas of Lorraine (East of France)

 Catherine Jondreville , Thomas Lacroix , Fabienne Barataud
Olivier A.; Bissonette J.-F.; Cogliastro A.; Gauthier C.; Gélinas N.; Laroche G. 5th World Congress on Agroforestry "Transitioning to a viable world", Jul 2022, Quebec (Canada), Canada. p.321, 2022, 5th World Congress on Agroforestry "Transitioning to a viable world"
Poster de conférence hal-04050782v1
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Insyght

 Thomas Lacroix , Valentin Loux , Annie A. Gendrault-Jacquemard , Jean-François Gibrat
2014
Logiciel hal-02795962v1
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ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures

 Julie Lao , Thomas Lacroix , Gérard Guédon , Charles Coluzzi , Sophie Payot , et al.
NAR Genomics and Bioinformatics, 2022, 4 (4), pp.lqac079. ⟨10.1093/nargab/lqac079⟩
Article dans une revue hal-03832376v1

Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.

 Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante , et al.
Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France
Communication dans un congrès hal-03495840v1

ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes

 Nathalie N. Leblond-Bourget , Julie Lao , Sophie Payot , Thomas Lacroix , Gérard Guédon , et al.
Réunion du GDR3546 Eléments transposables, Dec 2022, Paris, France
Communication dans un congrès hal-04232460v1
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Evaluating Genome Browsers Using a Software Qualification Method Evaluation

 Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Helene H. Chiapello
JOBIM 2010, Sep 2010, Montpellier, France. pp.196
Communication dans un congrès hal-02751310v1
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New Insights into the Classification and Integration Specificity of Streptococcus Integrative Conjugative Elements through Extensive Genome Exploration

 Chloé C. Ambroset , Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Valentin Loux , et al.
Frontiers in Microbiology, 2016, 6 (6), pp.1483. ⟨10.3389/fmicb.2015.01483⟩
Article dans une revue hal-01262284v1
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Evaluation of alley cropping agroforestry potential in northeastern France

 Nicolas Marron , Séverine Piutti , Thomas Lacroix , Patrick Cochard , Bernard Amiaud , et al.
4th World Congress on Agroforestry, May 2019, Montpellier, France
Poster de conférence hal-02975331v1

Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius.

 Sophie Payot , Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , et al.
5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022), Sep 2022, Caparica, Lisbon, Portugal
Poster de conférence hal-04232454v1

FirmiData: a set of 40 genomes of Firmicutes with a curated annotation of ICEs and IMEs

 Gérard Guédon , Julie Lao , Sophie Payot , Thomas Lacroix , Hélène Chiapello , et al.
BMC Research Notes, 2022, 15 (1), pp.157. ⟨10.1186/s13104-022-06036-w⟩
Article dans une revue hal-03971919v1
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ICEscreen

 Hélène Chiapello , Charles Coluzzi , Nathalie N. Leblond-Bourget , Thomas Lacroix , Julie Lao , et al.
2022, ⟨swh:1:dir:39855033173eb6e930cc148edef34905b34e8459;origin=https://hal.archives-ouvertes.fr/hal-03610196;visit=swh:1:snp:5f80897225e2e86613b5b10e7bdd103858426c8a;anchor=swh:1:rel:633a56d28c36ec614cb05ae1ab0494639c7e84af;path=/⟩
Logiciel hal-03610196v2

Synchronized navigation and comparative analyses across Ensembl complete bacterial genomes with INSYGHT.

 Thomas Lacroix , Sylvie Thérond , Marc Rugeri , Pierre P. Nicolas , Annie Gendrault , et al.
Bioinformatics, 2016, 32 (7), pp.1083-1084. ⟨10.1093/bioinformatics/btv689⟩
Article dans une revue hal-02630699v1
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Phenomenology of dark matter particles at the centers of galaxies

 Thomas Lacroix
Astrophysics [astro-ph]. Université Pierre et Marie Curie - Paris VI, 2016. English. ⟨NNT : 2016PA066060⟩
Thèse tel-01369006v1

Functional characterisation of keystone intestinal bacteria to metabolize prebiotics for the benefits of the digestive health and wellness.

 Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valérie Benoit , et al.
12th International Symposium on Gut Microbiology, Oct 2021, Online conference, France
Poster de conférence hal-04285893v1

Prebiotics for digestive health and wellness: how to successfully promote the gut microbiome?

 Cassandre Bedu-Ferrari , Paul Biscarrat , Sarah Vati , Cyril Chaudemanche , Valerie Benoit , et al.
Society for Applied Microbiology Early Career Scientist Research Symposium, Mar 2021, Online Conference, France
Communication dans un congrès hal-04285885v1
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A Glimpse into the World of Integrative and Mobilizable Elements in Streptococci Reveals an Unexpected Diversity and Novel Families of Mobilization Proteins

 Charles Coluzzi , Gérard Guédon , Marie-Dominique Devignes , Chloé C. Ambroset , Valentin Loux , et al.
Frontiers in Microbiology, 2017, 8, pp.16. ⟨10.3389/fmicb.2017.00443⟩
Article dans une revue hal-01580789v1
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Insyght: navigating amongst abundant homologues, syntenies and gene functional annotations in bacteria, it's that symbol!

 Thomas Lacroix , Valentin Loux , Annie Gendrault , Mark Hoebeke , Jean-François Gibrat
Nucleic Acids Research, 2014, 42 (21), pp.e162. ⟨10.1093/nar/gku867⟩
Article dans une revue hal-01332638v1

Impact of dietary fibers and prebiotics on the gut microbiota: consequences on the digestive health and wellness.

 Cassandre Bedu-Ferrari , Sarah Vati , Cyril Chaudemanche , Valérie Benoit , Thomas Lacroix , et al.
ABIES Days, Sep 2020, Paris, France
Communication dans un congrès hal-04285875v1
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Insyght: Using symbols to visualize homologies, conserved syntenies and genomic insertions across multiple genomes

 Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Mark M. Hoebeke , Jean-François Gibrat
JOBIM 2013 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2013, Toulouse, France. Société Française de Bio-Informatique -SFBI, pp.231, 2013, JOBIM TOULOUSE 2013 RÉSUMÉS COURS (affiches) - Volume 2/2
Poster de conférence hal-02748920v1
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IGO, Integration from Genomes to Organisms

 Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux , et al.
JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches)
Poster de conférence hal-02746442v1
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CompaGB: An open framework for genome browsers comparison

 Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Hélène Chiapello
BMC Research Notes, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩
Article dans une revue hal-02644023v1

The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.

 Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset , et al.
8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France
Communication dans un congrès hal-02974531v1

Classification of gamma-ray targets for velocity-dependent and subhalo-boosted dark-matter annihilation

 Thomas Lacroix , Gaétan Facchinetti , Judit Pérez-Romero , Martin Stref , Julien Lavalle , et al.
Journal of Cosmology and Astroparticle Physics, 2022, 10, pp.021. ⟨10.1088/1475-7516/2022/10/021⟩
Article dans une revue hal-03625365v1

Analytical insight into dark matter subhalo boost factors for Sommerfeld-enhanced $s$- and $p$-wave $\gamma$-ray signals

 Gaétan Facchinetti , Martin Stref , Thomas Lacroix , Julien Lavalle , Judit Pérez-Romero , et al.
Journal of Cosmology and Astroparticle Physics, 2023, 2023 (02), pp.004. ⟨10.1088/1475-7516/2023/02/004⟩
Article dans une revue hal-03625359v1
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