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27 résultats
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triés par
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Large-scale mammalian genome rearrangements coincide with chromatin interactionsBioinformatics, 2019, 35 (14), pp.i117-i126. ⟨10.1093/bioinformatics/btz343⟩
Article dans une revue
lirmm-02410438v1
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A general framework for genome rearrangement with biological constraintsAlgorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0149-4⟩
Article dans une revue
lirmm-02410420v1
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Rapid alignment-free phylogenec placement via ancestral k-mersMCEB: Mathematical and Computational Evolutionary Biology, Jun 2018, St Martin de Londres, France
Communication dans un congrès
lirmm-01964481v1
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Finding Local Genome Rearrangements17th International Workshop on Algorithms in Bioinformatics (WABI 2017), Aug 2017, Boston, United States. pp.24:1--24:13, ⟨10.4230/LIPIcs.WABI.2017.24⟩
Communication dans un congrès
lirmm-01794757v1
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Weighted minimum-length rearrangement scenariosWABI 2019 - 19th International Workshop on Algorithms in Bioinformatics, Sep 2019, Niagara Falls, NY, United States. pp.13:1-13:17, ⟨10.4230/LIPIcs.WABI.2019.13⟩
Communication dans un congrès
lirmm-02410451v1
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Quantifying Hierarchical Conflicts in Homology StatementsRECOMB-CG 2022 - 19th International Conference on Comparative Genomics, May 2022, La Jolla, CA, United States. pp.146-167, ⟨10.1007/978-3-031-06220-9_9⟩
Communication dans un congrès
hal-03875727v1
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Theory and practice of ultra-perfectionJournal of Computational Biology, 2011, 18 (9), pp.1219-1230. ⟨10.1089/cmb.2011.0086⟩
Article dans une revue
inria-00635033v1
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Gene tree correction guided by orthologyBMC Bioinformatics, 2013, 14 (Suppl 15), pp.S5
Article dans une revue
hal-00873235v1
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A Faster Algorithm for Computing the Kernel of Maximum Agreement SubtreesIEEE/ACM Transactions on Computational Biology and Bioinformatics, 2021, 18 (2), pp.416-430. ⟨10.1109/TCBB.2019.2922955⟩
Article dans une revue
lirmm-02410429v1
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Rapidly computing the phylogenetic transfer indexWABI 2019 - 19th International Workshop on Algorithms in Bioinformatics, Sep 2019, Niagara Falls, NY, United States. pp.20:1--20:12, ⟨10.4230/LIPIcs.WABI.2019.20⟩
Communication dans un congrès
lirmm-02410461v1
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Two Strikes Against the Phage Recombination ProblemRECOMB-CG 2023 - 20th International Conference on Comparative Genomics, Apr 2023, Istanbul, Turkey. pp.68-83, ⟨10.1007/978-3-031-36911-7_5⟩
Communication dans un congrès
hal-04312199v1
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On the Comparison of Bacteriophage PopulationsRECOMB-CG 2022 - 19th International Conference on Comparative Genomics, May 2022, La Jolla, CA, United States. pp.3-20, ⟨10.1007/978-3-031-06220-9_1⟩
Communication dans un congrès
hal-03875827v1
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A General Framework for Genome Rearrangement with Biological ConstraintsRECOMB-CG: Comparative Genomics, Oct 2018, Magog-Orford, QC, Canada. pp.49-71, ⟨10.1007/978-3-030-00834-5_3⟩
Communication dans un congrès
lirmm-02067487v1
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Rearrangement Scenarios Guided by Chromatin StructureRECOMB-CG: Comparative Genomics, Oct 2017, Barcelona, Spain. pp.141-155, ⟨10.1007/978-3-319-67979-2_8⟩
Communication dans un congrès
hal-01791974v1
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On the comparison of sets of alternative transcriptsInternational Symposium on Bioinformatics Research and Applications, 2012, Dallas, Germany. pp.201-212
Communication dans un congrès
hal-00750031v1
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Aligning the unalignable: bacteriophage whole genome alignmentsBMC Bioinformatics, 2016, 17 (1), pp.30-43. ⟨10.1186/s12859-015-0869-5⟩
Article dans une revue
lirmm-01275670v1
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An approximation algorithm for computing a parsimonious first speciation in the gene duplication modelRECOMB-Comparative Genomics, 2010, Canada. pp.290-302
Communication dans un congrès
hal-00527624v1
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A 2-Approximation for the Minimum Duplication Speciation ProblemJournal of Computational Biology, 2011, 18 (9), pp.1041-1053. ⟨10.1089/cmb.2011.0108⟩
Article dans une revue
inria-00635025v1
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Models and algorithms for genome rearrangement with positional constraintsAlgorithms for Molecular Biology, 2016, 11 (1), pp.13-24. ⟨10.1186/s13015-016-0065-9⟩
Article dans une revue
lirmm-01348502v1
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Diversity of bacteriophages encoding Panton-Valentine leukocidin in temporally and geographically related Staphylococcus aureusPLoS ONE, 2020, 15 (2), pp.e0228676. ⟨10.1371/journal.pone.0228676⟩
Article dans une revue
hal-03064749v1
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Ultra-perfect Sorting ScenariosRECOMB-Comparative Genomics, 2010, Canada. pp.50-61
Communication dans un congrès
hal-00527625v1
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Rapid alignment-free phylogenetic identification of metagenomic sequences2019
Pré-publication, Document de travail
lirmm-01964474v2
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Rapid alignment-free phylogenetic identification of metagenomic sequencesBioinformatics, 2019, 35 (18), pp.3303-3312. ⟨10.1093/bioinformatics/btz068⟩
Article dans une revue
lirmm-02410441v1
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Un siècle de réarrangements génomiquesGilles Didier (IMAG); Stéphane Guindon (LIRMM). Modèles et méthodes pour l’évolution biologique, Chapitre 5, ISTE, pp.127-150, 2022, 9781789480696. ⟨10.51926/ISTE.9069.ch5⟩
Chapitre d'ouvrage
hal-03875891v1
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Evaluating impacts of syntenic block detection strategies on rearrangement phylogeny using Mycobacterium tuberculosis isolatesBioinformatics, 2023, 39 (1), pp.#btad024. ⟨10.1093/bioinformatics/btad024⟩
Article dans une revue
hal-03875983v1
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Finding local genome rearrangementsAlgorithms for Molecular Biology, 2018, 13, pp.9-23. ⟨10.1186/s13015-018-0127-2⟩
Article dans une revue
lirmm-01794753v1
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Assisted transcriptome reconstruction and splicing orthologyBMC Genomics, 2016, Proceedings of the 14th Annual Research in Computational Molecular Biology (RECOMB) Comparative Genomics Satellite Workshop: genomics, 17 (Suppl 10), pp.786. ⟨10.1186/s12864-016-3103-6⟩
Article dans une revue
hal-01396410v1
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