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Identification of shared tumor epitopes from endogenous retroviruses inducing high-avidity cytotoxic T cells for cancer immunotherapy

 Paola Bonaventura , Vincent Alcazer , Virginie Mutez , Laurie Tonon , Juliette Martin , et al.
Science Advances , 2022, 8 (4), ⟨10.1126/sciadv.abj3671⟩
Article dans une revue hal-03552937v1
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Conformational space exploration of cryo-EM structures by variability refinement

 Pavel V Afonine , Alexia Gobet , Loïck Moissonnier , Juliette Martin , Billy K Poon , et al.
Biochimica et Biophysica Acta:Biomembranes, 2023, 1865 (4), pp.184133. ⟨10.1016/j.bbamem.2023.184133⟩
Article dans une revue hal-04022885v1
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Structural deformation upon protein-protein interaction: A structural alphabet approach

 Juliette Martin , Leslie Regad , Hélène Lecornet , Anne-Claude Camproux
BMC Structural Biology, 2008, 8 (12), 18 p. ⟨10.1186/1472-6807-8-12⟩
Article dans une revue hal-02662156v1
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Rational Prediction of PROTAC-compatible Protein-Protein Interfaces by Molecular Docking

 Gilberto P Pereira , Brian Jiménez-García , Riccardo Pellarin , Guillaume Launay , Sangwook Wu , et al.
Journal of Chemical Information and Modeling, In press, ⟨10.1021/acs.jcim.3c01154⟩
Article dans une revue hal-04274715v1
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Rescoring ensembles of protein-protein docking poses using consensus approaches

 Guillaume Launay , Masahito Ohue , Julia Prieto Santero , Yuri Matsuzaki , Cécile Hilpert , et al.
2020
Pré-publication, Document de travail hal-02873713v1
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Towards design of drugs and delivery systems with the Martini coarse-grained model

 Lisbeth Kjølbye , Gilberto Pereira , Alessio Bartocci , Martina Pannuzzo , Simone Albani , et al.
QRB Discovery, 2022, 3, pp.e19. ⟨10.1017/qrd.2022.16⟩
Article dans une revue hal-03864646v1

Allosteric Inhibition of Adenylyl Cyclase Type 5 by G-Protein: A Molecular Dynamics Study

 Elisa Frezza , Tina-Méryl Amans , Juliette Martin
Biomolecules, 2020, 10 (9), pp.1330. ⟨10.3390/BIOM10091330⟩
Article dans une revue hal-02988410v1
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Description of the local protein structure. I. Classical approaches.

 Cristina Benros , Juliette Martin , Manoj Tyagi , Alexandre de Brevern
Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.6-27, 2007
Chapitre d'ouvrage inserm-00176471v1
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Multiscale molecular simulations to investigate adenylyl cyclase‐based signaling in the brain

 Siri van Keulen , Juliette Martin , Francesco Colizzi , Elisa Frezza , Daniel Trpevski , et al.
WIREs Computational Molecular Science, 2022, ⟨10.1002/wcms.1623⟩
Article dans une revue hal-03695888v1
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Using normal mode analysis on protein structural models. How far can we go on our predictions?

 Nuria Cirauqui Diaz , Elisa Frezza , Juliette Martin
Proteins - Structure, Function and Bioinformatics, 2021, 89 (5), pp.531-543. ⟨10.1002/prot.26037⟩
Article dans une revue hal-03106071v1
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When Alphafold2 predictions go wrong for protein–protein complexes, is there something to be learnt?

 Juliette Martin
Quarterly Reviews of Biophysics, 2022, 55, pp.e6. ⟨10.1017/s0033583522000051⟩
Article dans une revue hal-03775970v1
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Pharmacomodulation of a ligand targeting the HBV capsid hydrophobic pocket

 Mathilde Briday , François Hallé , Lauriane Lecoq , Sylvie Radix , Juliette Martin , et al.
Chemical Science, 2022, 13 (30), pp.8840 - 8847. ⟨10.1039/d2sc02420a⟩
Article dans une revue hal-03750003v1
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Specific Xray diffraction patterns of membrane proteins caused by secondary structure collinearity

 Juliette Martin , Xavier Robert , Patrice Gouet , Pierre Falson , Vincent Chaptal
Biochimica et Biophysica Acta:Biomembranes, 2022, pp.184065. ⟨10.1016/j.bbamem.2022.184065⟩
Article dans une revue hal-03796617v1
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In silico local structure approach: A case study on Outer Membrane Proteins.

 Juliette Martin , Alexandre de Brevern , Anne-Claude Camproux
Proteins - Structure, Function and Bioinformatics, 2008, 71 (1), pp.92-109. ⟨10.1002/prot.21659⟩
Article dans une revue inserm-00176452v1
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Description of the local protein structure. II. Novel approaches.

 Manoj Tyagi , Cristina Benros , Juliette Martin , Alexandre de Brevern
Alexandre G. de Brevern. Recent Advances in Structural Bioinformatics, Research Signpost, Trivandrum, Kerala, India., pp.28-42, 2007
Chapitre d'ouvrage inserm-00176668v1

Changes in grain ionome composition in pea-wheat intercropping are associated with the abundance of Pseudomonas spp. and Enterobacterales

 Amelie Semblat , Turanoglu, Cem , Valérie Dufayet , Céline Faivre-Primot , Damien Marchand , et al.
Journée doctorants UMR Agroécologie, Nov 2023, Dijon, France
Communication dans un congrès hal-04317153v1
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X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins

 Xavier Robert , Josiane Kassis-Sahyoun , Nicoletta Ceres , Juliette Martin , Michael R Sawaya , et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-17216-1⟩
Article dans une revue hal-02329431v1
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Comparative kinomics of human and chimpanzee reveal unique kinship and functional diversity generated by new domain combinations

 Krishanpal Anamika , Juliette Martin , Narayanaswamy Srinivasan
BMC Genomics, 2008, 9 (625), pp.1-8. ⟨10.1186/1471-2164-9-625⟩
Article dans une revue hal-02665034v1
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X-ray diffraction reveals the intrinsic difference in the physical properties of membrane and soluble proteins

 Xavier Robert , Josiane Kassis-Sahyoun , Nicoletta Ceres , Juliette Martin , Michael Sawaya , et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-17216-1⟩
Article dans une revue hal-02110047v1
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Mining protein loops using a structural alphabet and statistical exceptionality.

 Leslie Regad , Juliette Martin , Gregory Nuel , Anne-Claude Camproux
BMC Bioinformatics, 2010, 11 (1), pp.75. ⟨10.1186/1471-2105-11-75⟩
Article dans une revue inserm-00656194v1
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Phenotypic and genotypic convergences are influenced by historical contingency and environment in yeast

 Aymé Spor , Daniel J. Kvitek , Thibault Nidelet , Juliette Martin , Judith Legrand , et al.
Evolution - International Journal of Organic Evolution, 2014, 68 (3), pp.772-790. ⟨10.1111/evo.12302⟩
Article dans une revue hal-02631279v1
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AlphaFold2 predicts interactions amidst confounding structural compatibility

 Juliette Martin
2023
Pré-publication, Document de travail hal-04275604v1

Arbitrary protein-protein docking targets biologically relevant interfaces.

 Juliette Martin , Richard Lavery
BMC Biophysics, 2012, 5, pp.7. ⟨10.1186/2046-1682-5-7⟩
Article dans une revue hal-00965885v1
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Drug-bound and -free outward-facing structures of a multidrug ABC exporter point to a swing mechanism

 Vincent Chaptal , Veronica Zampieri , Benjamin Wiseman , Cédric Orelle , Juliette Martin , et al.
2021
Pré-publication, Document de travail hal-03388821v1

Identification and visualization of protein binding regions with the ArDock server

 Sébastien Reille , Mélanie Garnier , Xavier Robert , Patrice Gouet , Juliette Martin , et al.
Nucleic Acids Research, 2018, 46 (W1), pp.W417-W422. ⟨10.1093/nar/gky472⟩
Article dans une revue hal-02344721v1

Internal Normal Mode Analysis Applied to RNA Flexibility and Conformational Changes

 Afra Sabei , Talissa Gabriele Caldas Baia , Raphaël Saffar , Juliette Martin , Elisa Frezza
Journal of Chemical Information and Modeling, 2023, 63 (8), pp.2554-2572. ⟨10.1021/acs.jcim.2c01509⟩
Article dans une revue hal-04213451v1

The Candida glabrata glycogen branching enzyme structure reveals unique features of branching enzymes of the Saccharomycetaceae phylum

 Léa Conchou , Juliette Martin , Isabelle R. Gonçalves , Frédéric Galisson , Sébastien Violot , et al.
Glycobiology, 2022, 32 (4), pp.343-355. ⟨10.1093/glycob/cwab110⟩
Article dans une revue hal-03539601v1
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Evaluation of CONSRANK-Like Scoring Functions for Rescoring Ensembles of Protein–Protein Docking Poses

 Guillaume Launay , Masahito Ohue , Julia Prieto Santero , Yuri Matsuzaki , Cécile Hilpert , et al.
Frontiers in Molecular Biosciences, 2020, 7, ⟨10.3389/fmolb.2020.559005⟩
Article dans une revue hal-02988429v1

Theoretical description of chromosome architecture after multiple back-crossing

 Francois F. Rodolphe , Juliette Martin , Emmanuella Della-Chiesa
Theoretical Population Biology, 2008, 73 (2), pp.289-299. ⟨10.1016/j.tpb.2007.11.004⟩
Article dans une revue istex hal-02657699v1

Taking advantage of local structure descriptors to analyze interresidue contacts in protein structures and protein complexes

 Juliette Martin , Leslie Regad , Catherine Etchebest , Anne-Claude Camproux
Protein Journal, 2008, 71 (3), pp.672-689
Article dans une revue hal-02667856v1
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