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Zika virus in the Americas: early epidemiological and genetic findings

Nuno Rodrigues Faria , R. D. S. D. S. Azevedo , M. U. G. Kraemer , Renato Souza , Mariana Sequetin Cunha , et al.
Science, 2016, 352 (6283), pp.345-349. ⟨10.1126/science.aaf5036⟩
Article dans une revue hal-02641629v1

Distinct Zika virus lineage in salvador, Bahia, Brazil

Samia N. Naccache , Julien Thézé , Silvia I. Sardi , Sneha Somasekar , Alexander L. Greninger , et al.
Emerging Infectious Diseases, 2016, 22 (10), pp.1788-1792. ⟨10.3201/eid2210.160663⟩
Article dans une revue hal-02637102v1

Hologenomic adaptations underlying the evolution of sanguivory in the common vampire bat

M. Lisandra Zepeda Mendoza , Zijun Xiong , Marina Escalera-Zamudio , Anne Kathrine Runge , Julien Thézé , et al.
Nature Ecology & Evolution, 2018, 2 (4), pp.659-668. ⟨10.1038/s41559-018-0476-8⟩
Article dans une revue hal-02624755v1
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Epidemiologic History and Genetic Diversity Origins of Chikungunya and Dengue Viruses, Paraguay

Tiago Gräf , Cynthia Vazquez , Marta Giovanetti , Fernanda de Bruycker-Nogueira , Vagner Fonseca , et al.
Emerging Infectious Diseases, 2021, 27 (5), pp.1393-1404. ⟨10.3201/eid2705.204244⟩
Article dans une revue hal-03358364v1
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Identification of evolutionary trajectories shared across human betacoronaviruses

Marina Escalera-Zamudio , Sergei Kosakovsky Pond , Natalia Martínez de la Viña , Bernardo Gutiérrez , Rhys Inward , et al.
Genome Biology and Evolution, 2023, 15 (6), ⟨10.1093/gbe/evad076⟩
Article dans une revue hal-04104860v1
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Evolution and epidemic spread of SARS-CoV-2 in Brazil

Darlan Candido , Ingra Claro , Jaqueline de Jesus , William Souza , Filipe Moreira , et al.
Science, 2020, 369 (6508), pp.eabd2161. ⟨10.1126/science.abd2161⟩
Article dans une revue hal-02912138v1

When parasitic wasps hijacked viruses: genomic and functional evolution of polydnaviruses

Elisabeth A. Herniou , Elisabeth Huguet , Julien Thézé , Annie Bézier , Georges Périquet , et al.
Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences (1934–1990), 2013, 368 (1626), pp.20130051. ⟨10.1098/rstb.2013.0051⟩
Article dans une revue hal-00864019v1

Genomic epidemiology reveals multiple introductions of Zika virus into the United States

Nathan D. Grubaugh , Jason T. Ladner , Moritz U. G. Kraemer , Gytis Dudas , Amanda L. Tan , et al.
Nature, 2017, 546 (7658), pp.401-405. ⟨10.1038/nature22400⟩
Article dans une revue hal-02626575v1

Genomic and epidemiological monitoring of yellow fever virus transmission potential

N. R. Faria , M. U. G. Kraemer , S. C. Hill , J. Goes de Jesus , R. S. Aguiar , et al.
Science, 2018, 361 (6405), pp.894-899. ⟨10.1126/science.aat7115⟩
Article dans une revue hal-02629326v1

Molecular epidemiology reveals the role of war in the spread of HIV in Ukraine

Tetyana I. Vasylyeva , Mariia Liulchuk , Samuel R. Friedman , Iana Sazonova , Nuno R. Faria , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2018, 115 (5), pp.1051-1056. ⟨10.1073/pnas.1701447115⟩
Article dans une revue hal-02626305v1

Emergence of the Asian lineage of Zika virus in Angola: an outbreak investigation

Sarah C. Hill , Jocelyne Vasconcelos , Zoraima Neto , Domingos Jandondo , Líbia Zé-Zé , et al.
The Lancet Infectious Diseases, 2019, 19 (10), pp.1138-1147. ⟨10.1016/S1473-3099(19)30293-2⟩
Article dans une revue hal-02626572v1

Yellow fever virus re-emergence and spread in Southeast Brazil, 2016-2019

Marta Giovanetti , Marcos Cesar Lima de Mendonça , Vagner Fonseca , Maria Angélica Mares-Guia , Allison Fabri , et al.
Journal of Virology, 2019, 94 (1), pp.e01623-19. ⟨10.1128/JVI.01623-19⟩
Article dans une revue hal-02626280v1

Paleozoic origin of insect large dsDNA viruses

Julien Thézé , A. Bezier , Georges Périquet , J.-M. Drezen , Elisabeth A. Herniou
Proceedings of the National Academy of Sciences of the United States of America, 2011, 108 (38), pp.15931-15935. ⟨10.1073/pnas.1105580108⟩
Article dans une revue hal-02649399v1

Quantifying time-dependent predictors for the international spatial spread of Highly Pathogenic Avian Influenza H5NX - focus on trade and surveillance efforts

Lina Awada , Bram Vrancken , Julien Thézé , Christian Ducrot , Paolo Tizzani , et al.
ISVEE 16, Aug 2022, Halifax, Nova Scotia, France
Communication dans un congrès hal-04178173v1
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Genomic Epidemiology of Early SARS-CoV-2 Transmission Dynamics, Gujarat, India

Jayna Raghwani , Louis Du Plessis , John T Mccrone , Sarah C Hill , Kris V Parag , et al.
Emerging Infectious Diseases, 2022, 28 (4), pp.751-758. ⟨10.3201/eid2804.212053⟩
Article dans une revue hal-03778378v1

Convergent trends and spatiotemporal patterns of Aedes-borne arboviruses in Mexico and Central America

Bernardo Gutierrez , Darlan da Silva Candido , Sumali Bajaj , Abril Paulina Rodriguez Maldonado , Fabiola Garces Ayala , et al.
PLoS Neglected Tropical Diseases, 2023, 17 (9), pp.e0011169. ⟨10.1371/journal.pntd.0011169⟩
Article dans une revue hal-04198985v1

Metagenomic sequencing with spiked primer enrichment for viral diagnostics and genomic surveillance

Xianding Deng , Asmeeta Achari , Scot Federman , Guixia Yu , Sneha Somasekar , et al.
Nature Microbiology, 2020, ⟨10.1038/s41564-019-0637-9⟩
Article dans une revue hal-02624759v1

MVSE : an R‐package that estimates a climate‐driven mosquito‐borne viral suitability index

Uri Obolski , Pablo N. Perez , Christian Julián Villabona-Arenas , Julien Thézé , Nuno R. Faria , et al.
Methods in Ecology and Evolution, 2019, 10 (8), pp.1357-1370. ⟨10.1111/2041-210X.13205⟩
Article dans une revue hal-02626567v1

Gene acquisition convergence between entomopoxviruses and baculoviruses

Julien Thézé , Jun Takatsuka , Madoka Nakai , Basil Arif , Elisabeth Herniou
Viruses, 2015, 7 (4), pp.1960-1974. ⟨10.3390/v7041960⟩
Article dans une revue hal-02637094v1

Functional annotation of Cotesia congregata bracovirus: identification of the viral genes expressed in parasitized host immune tissues.

Chevignon Germain , Julien Thézé , Sébastien Cambier , Julie Poulain , Corinne da Silva , et al.
Journal of Virology, 2014, 88 (16), pp.13678-13688. ⟨10.1128/JVI.00209-14⟩
Article dans une revue hal-01083811v1

Genomic diversity in European Spodoptera exigua multiple nucleopolyhedrovirus isolates

Julien Thézé , Oihana Cabodevilla , Leopoldo Palma , Trevor Williams , Primitivo Caballero , et al.
Journal of General Virology, 2014, 95 (10), pp.2297-2309. ⟨10.1099/vir.0.064766-0⟩
Article dans une revue hal-01313729v1

Genetic diversity and phenotypic associations of feline caliciviruses from cats in Switzerland

Andrea M. Spiri , Julien Thézé , Marina L. Meli , Valentino Cattori , Alice Berger , et al.
Journal of General Virology, 2016, 97 (12), pp.3253-3266. ⟨10.1099/jgv.0.000622⟩
Article dans une revue hal-02637095v1

Hepacivirus cross-species transmission and the origins of the hepatitis C virus

Oliver G. Pybus , Julien Thézé
Current Opinion in Virology, 2016, 16, pp.1-7. ⟨10.1016/j.coviro.2015.10.002⟩
Article dans une revue hal-02637101v1
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Revisiting the missing protein-coding gene catalog of the domestic dog.

Thomas Derrien , Julien Thézé , Amaury Vaysse , Catherine André , Elaine A. Ostrander , et al.
BMC Genomics, 2009, 10 (1), pp.62. ⟨10.1186/1471-2164-10-62⟩
Article dans une revue inserm-00366111v1
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Genome-wide phylodynamic approach reveals the epidemic dynamics of the main Mycoplasma bovis subtype circulating in France

Julien Thézé , Chloé Ambroset , Séverine Barry , Sébastien Masseglia , Adélie Colin , et al.
Microbial Genomics, 2023, 9 (7), pp.mgen001067. ⟨10.1099/mgen.0.001067⟩
Article dans une revue hal-04181802v1

Genomic Surveillance of Yellow Fever Virus Epizootic in São Paulo, Brazil, 2016 – 2018

Sarah Hill , Renato de Souza , Julien Thézé , Ingra Claro , Renato Aguiar , et al.
PLoS Pathogens, 2020, 16 (8), pp.e1008699. ⟨10.1371/journal.ppat.1008699⟩
Article dans une revue hal-02932054v1
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Parallel evolution in the emergence of highly pathogenic avian influenza A viruses

Marina Escalera-Zamudio , Michael Golden , Bernardo Gutiérrez , Julien Thézé , Jeremy Russell Keown , et al.
Nature Communications, 2020, 11 (1), ⟨10.1038/s41467-020-19364-x⟩
Article dans une revue hal-03358343v1

Molecular evolution, diversity, and adaptation of Influenza A(H7N9) viruses in China

Jing Lu , Jayna Raghwani , Rhys Pryce , Thomas A. Bowden , Julien Thézé , et al.
Emerging Infectious Diseases, 2018, 24 (10), pp.1795-1805. ⟨10.3201/eid2410.171063⟩
Article dans une revue hal-02626570v1

Genomic and epidemiological characterisation of a dengue virus outbreak among blood donors in Brazil

Nuno R. Faria , Antonio Charlys da Costa , José Lourenço , Paula Loureiro , Maria Esther Lopes , et al.
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-15152-8⟩
Article dans une revue hal-02626576v1

Circulation of chikungunya virus East/Central/South African lineage in Rio de Janeiro, Brazil

Joilson Xavier , Marta Giovanetti , Vagner Fonseca , Julien Thézé , Tiago Gräf , et al.
PLoS ONE, 2019, 14 (6), pp.e0217871. ⟨10.1371/journal.pone.0217871⟩
Article dans une revue hal-02624756v1