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Piecewise deterministic Markov processes applied to fatigue crack growth modelling

 Julien Chiquet , Nikolaos Limnios , Mohamed Eid
Journal of Statistical Planning and Inference, 2009, 139 (5), pp.1657-1667. ⟨10.1016/j.jspi.2008.05.034⟩
Article dans une revue istex hal-02663292v1

Modelling and estimating the reliability of stochastic dynamical systems with Markovian switching

 Julien Chiquet , Mohamed Eid , Nikolaos Limnios
Reliability Engineering and System Safety, 2008, 93 (12), pp.1801-1808. ⟨10.1016/j.ress.2008.03.016⟩
Article dans une revue istex hal-02666257v1

Sparse Gaussian graphical models for biological network inference

 Julien Chiquet
ISI 59. World Statistics Congress 2013, Aug 2013, Hong-Kong, Hong Kong SAR China. International Statistical Institute, 2013, Proceedings of the 59th World Statistics Congress of the International Statistical Institute, 2013
Poster de conférence hal-01601770v1
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Adjusting the adjusted Rand Index A multinomial story

 Martina Sundqvist , Julien Chiquet , Guillem Rigaill
Computational Statistics, 2022, 38 (1), pp.327-347. ⟨10.1007/s00180-022-01230-7⟩
Article dans une revue hal-03696588v1
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Coupling ecological network analysis with high-throughput sequencing-based surveys: Lessons from the next-generation biomonitoring project

 Maxime Dubart , Pascal Alonso , Didac Barroso-Bergadà , N. Becker , Kevine Bethune , et al.
David A. Bohan; Alex J. Dumbrell; Adam J. Vanbergen. The Future of Agricultural Landscapes, Part III, 65, Elsevier, pp.367-430, 2022, Advances in Ecological Research, 9780323915038. ⟨10.1016/bs.aecr.2021.10.007⟩
Chapitre d'ouvrage hal-03634351v1
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Temporal patterns in Ixodes ricinus microbial communities: an insight into tick-borne microbe interactions

 E. Lejal , J. Chiquet , J. Aubert , S. Robin , A. Estrada-Peña , et al.
Microbiome, 2021, 9 (1), pp.153. ⟨10.1186/s40168-021-01051-8⟩
Article dans une revue hal-03287263v1
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aricode: Efficient Computations of Standard Clustering Comparison Measures

 Julien Chiquet , Guillem Rigaill , Martina Sundqvist
2020, ⟨swh:1:dir:5611b0b1a170db175583d4243ec8639e0e846f01;origin=https://hal.archives-ouvertes.fr/hal-04479410;visit=swh:1:snp:e98ee67c94e9d082fcfe9a391e0f933e2a575fe9;anchor=swh:1:rel:a1c2ad44b535c5a6bff2d740d9b0278c3d5a55ba;path=/⟩
Logiciel hal-04479410v1
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Automated calibration for stability selection in penalised regression and graphical models

 Barbara Bodinier , Sarah Filippi , Therese Haugdahl Nøst , Julien Chiquet , Marc Chadeau-Hyam
Journal of the Royal Statistical Society: Series C Applied Statistics, 2023, ⟨10.1093/jrsssc/qlad058⟩
Article dans une revue hal-04162993v1

PLNmodels: Poisson lognormal models

 Julien Chiquet , Mahendra Mariadassou , Stephane S. Robin , François Gindraud
2019, ⟨swh:1:dir:cfa1e1e06bbff34b4203820ebe23d1a1b54e713f;origin=https://github.com/PLN-team/PLNmodels;visit=swh:1:snp:33650f3635758717aa9ed6d1c6150f6e00711181;anchor=swh:1:rev:afad5560c704d29ff5704df4993bb471bd971f6c⟩
Logiciel hal-04440660v1
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PO-435 Proteomic classification of triple negative breast cancer

 Martina Sundqvist , Leanne de Koning , Guillem Rigaill , Tristan Dubois , Julien Chiquet
25th Biennial Congress of the European Association for Cancer Research, Jun 2018, Amsterdam, Netherlands. ESMO Open, 3, pp.A402, 2018, ⟨10.1136/esmoopen-2018-EACR25.946⟩
Poster de conférence hal-04440537v1
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Variational Inference for Stochastic Block Models From Sampled Data

 Timothée Tabouy , Pierre Barbillon , Julien Chiquet
Journal of the American Statistical Association, 2020, pp.1-23. ⟨10.1080/01621459.2018.1562934⟩
Article dans une revue hal-02316509v1

Statistique et génome : réseaux biologiques

 Julien Chiquet
Gazette des Mathématiciens , 2011, 130, pp.76-82
Article dans une revue hal-01602021v1
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FLPCA: A Fused Lasso PCA-based approach to identify influential markers in differentiated populations from dense SNP data

 Denis Laloë , Julien Chiquet , Florence Jaffrezic , Mathieu M. Gautier
International Biometric Conference, Jul 2014, Firenze, Italy
Communication dans un congrès hal-02798952v1
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Inferring sparse Gaussian graphical models with latent structure

 Christophe Ambroise , Julien Chiquet , Catherine Matias
Electronic Journal of Statistics , 2009, 3, pp.205-238. ⟨10.1214/08-EJS314⟩
Article dans une revue hal-00592201v1
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Multivariate statistical modelling for QTL detection and marker selection in a bi-parental grapevine population

 Charlotte Brault , Marie Perrot-Dockès , Agnes Doligez , Julien Chiquet , Loic Le Cunff , et al.
17. Meeting of the EUCARPIA Section Biometrics in Plant Breeding, Sep 2018, Gand, Belgium
Communication dans un congrès hal-01868802v1
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Modélisation et estimation des processus de dégradation avec application en fiabilité des structures

 Julien Chiquet
Mathématiques [math]. Université de Technologie de Compiègne, 2007. Français. ⟨NNT : ⟩
Thèse tel-00165782v1

Network inference in breast cancer with Gaussian graphical models and extensions

 Julien Chiquet , Marine Jeanmougin , Camille Charbonnier
Probabilistic Graphical Models for Genetics, Genomics, and Postgenomics, Oxford University Press, 2014, 9780198709022. ⟨10.1093/acprof:oso/9780198709022.001.0001⟩
Chapitre d'ouvrage hal-01564554v1
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Identification of deregulated transcription factors involved in subtypes of cancers

 Magali Champion , Julien Chiquet , Pierre Neuvial , Mohamed Elati , François Radvanyi , et al.
Proceedings of the 12th International Conference on Bioinformatics and Computational Biology, Mar 2020, SAN FRANCISCO, United States. pp.1--10, ⟨10.29007/v7qj⟩
Communication dans un congrès hal-01516892v2

Reliability of stochastic dynamical systems applied to fatigue crack growth modeling

 Julien Chiquet , Nikolaos Limnios
Catherine Huber, Nikolaos Limnios, Mounir Mesbah, Mikhail Nikulin. Mathematical Methods in Survival Analysis, Reliability and Quality of Life, John Wiley, pp.163-175, 2008, 9780470610985. ⟨10.1002/9780470610985.ch11⟩
Chapitre d'ouvrage hal-00260748v1
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Variational inference for probabilistic Poisson PCA

 Julien Chiquet , Mahendra Mariadassou , Stephane Robin
Annals of Applied Statistics, 2018, 12 (4), pp.2674-2698. ⟨10.1214/18-AOAS1177⟩
Article dans une revue hal-01941270v1

Fast tree aggregation for consensus hierarchical clustering: application to multi-omics data analysis

 Audrey Hulot , Julien Chiquet , Florence Jaffrezic , Guillem Rigaill
Statistical Methods for Post-Genomic Data (SMPGD), 2019, Barcelona, Spain
Communication dans un congrès hal-02483674v1
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A Quantitative Multivariate Model of Human Dendritic Cell-T Helper Cell Communication

 Maximilien Grandclaudon , Marie Perrot-Dockes , Coline Trichot , Léa Karpf , Omar Abouzid , et al.
Cell, 2019, 179 (2), pp.432-447.e21. ⟨10.1016/j.cell.2019.09.012⟩
Article dans une revue hal-02316607v1
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missSBM: Handling missing data in Stochastic Block Models

 Julien Chiquet , Pierre Barbillon , Timothée Tabouy
2019, ⟨swh:1:dir:d7abb55e788810b6971ff8f03b7cb231114db501;origin=https://hal.archives-ouvertes.fr/hal-04440731;visit=swh:1:snp:c36484e3b9eca8af27d1681a835690961101fdd7;anchor=swh:1:rel:bf4b5a1e67cea5bdc5a8adbe870e76a7ac8c65f3;path=/⟩
Logiciel hal-04440731v1

Dynamical systems with semi-Markovian perturbations and their use in structural reliability

 Julien Chiquet , Nikolaos Limnios
Stochastic reliability and maintenance modeling, Springer Link, 2013, Springer Series in Reliability Engineering, ⟨10.1007/978-1-4471-4971-2_10⟩
Chapitre d'ouvrage istex hal-01603729v1

Cell specialization and coordination in Arabidopsis leaves upon pathogenic attack revealed by scRNA-seq.

 Etienne Delannoy , Bastien Batardiere , Stéphanie Pateyron , Ludivine Soubigou-Taconnat , Julien Chiquet , et al.
Plant Communications, 2023, 4 (5), pp.100676. ⟨10.1016/j.xplc.2023.100676⟩
Article dans une revue hal-04194719v1
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mergeTrees: Aggregating Trees

 Julien Chiquet , Guillem Rigaill , Audrey Hulot
2019, ⟨swh:1:dir:afc2108cf6953ffa4e3b912b6633ced23e817dc7;origin=https://hal.archives-ouvertes.fr/hal-04500072;visit=swh:1:snp:031d57f01a704f13fb222218fbca370a02148249;anchor=swh:1:rel:90c7a9e908b44d5006c0b0b62309dfea7843e76e;path=/⟩
Logiciel hal-04500072v1
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SIMoNe: Statistical Inference for MOdular NEtworks.

 Julien Chiquet , Alexander Smith , Gilles Grasseau , Catherine Matias , Christophe Ambroise
Bioinformatics, 2009, 25 (3), pp.417-418. ⟨10.1093/bioinformatics/btn637⟩
Article dans une revue hal-00592218v1
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Fast Tree Inference With Weighted Fusion Penalties

 Julien Chiquet , Pierre Gutierrez , Guillem Rigaill
Journal of Computational and Graphical Statistics, 2017, 26 (1), pp.205 - 216. ⟨10.1080/10618600.2015.1096789⟩
Article dans une revue hal-01597604v1
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A fast homotopy algorithm for a large class of weighted classification problems

 Pierre Gutierrez , Guillem Rigaill , Julien Chiquet
MLCB NIPS 2013, Oct 2013, South Lake Thao, United States. 2013
Poster de conférence hal-01601843v1
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Benchmarking predictive models: evaluating parametric, ensemble, and deep learning approaches for animal phenotype prediction from genotypes.

 Eric Barrey , Blaise Hanczar , Julien Chiquet , Didier Boichard , Jocelyn de Goër de Herve , et al.
AI and biology Symposium, EMBO EMBL, Heidelberg, Mar 2024, HEIDELBERG, Germany
Communication dans un congrès hal-04510253v1
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