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Julien Bobe - Curriculum vitae


Current position. Research Director (DR1) and director of the Fish Physiology and Genomics laboratory.

 

Employment history

-       -  Ph.D. University of Rennes I (April 2001).

-        - Habilitation à Diriger les Recherches, University of Rennes I (March 2009).

-        - Visiting research student in Pr. FW Goetz Laboratory. 1998-2000 (Univ. Notre Dame, USA).

-        - INRAE Research Scientist. 2001-2009 (SCRIBE Laboratory).

-        - INRAE Research Director and group leader. 2010-2015 (Fish Physiology and Genomics Laboratory)

Director of INRAE fish physiology and genomics laboratory (since 2016)


Journal articles105 documents

  • Yann Guiguen, Jeremy Pasquier, Alexis Fostier, Julien Bobe. Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates. General and Comparative Endocrinology, Elsevier, 2021, 300, pp.1-8. ⟨10.1016/j.ygcen.2020.113646⟩. ⟨hal-02987822⟩
  • Ozlem Yilmaz, Emmanuelle Com, Regis Lavigne, Charles Pineau, Julien Bobe. Liquid chromatography and tandem mass spectrometry in label-free of Zebrafish (Danio rerio) eggs. Methods in Molecular Biology, Humana Press/Springer Imprint, 2021, 2218, pp.277-290. ⟨10.1007/978-1-0716-0970-5_22⟩. ⟨hal-03150186⟩
  • Thérèse Callet, Huihua Hu, Laurence Larroquet, Anne Surget, Jingwei Liu, et al.. Exploring the impact of a low-protein high-carbohydrate diet in mature broodstock of a glucose-intolerant teleost, the rainbow trout. Frontiers in Physiology, Frontiers, 2020, 11, ⟨10.3389/fphys.2020.00303⟩. ⟨hal-02868956⟩
  • J. Nynca, D. Żarski, Julien Bobe, A. Ciereszko. Domestication is associated with differential expression of pikeperch egg proteins involved in metabolism, immune response and protein folding. animal, Published by Elsevier (since 2021) / Cambridge University Press (until 2020), 2020, 14 (11), pp.2336-2350. ⟨10.1017/S1751731120001184⟩. ⟨hal-02945163⟩
  • Emilie Cardona, Jérôme Bugeon, Emilien Segret, Julien Bobe. VisEgg: a robust phenotyping tool to assess rainbow trout egg features and viability. Fish Physiology and Biochemistry, Springer Verlag, 2020, pp.1-9. ⟨10.1007/s10695-020-00844-2⟩. ⟨hal-03020814⟩
  • Manon Lesage, Manon Thomas, Jérôme Bugeon, Adèle Branthonne, Stéphanie Gay, et al.. C-ECi: a CUBIC-ECi combined clearing method for three-dimensional follicular content analysis in the fish ovary. Biology of Reproduction, Society for the Study of Reproduction, 2020, 103 (5), pp.1099-1109. ⟨10.1093/biolre/ioaa142⟩. ⟨hal-02935099⟩
  • Amaury Herpin, Laury Lescat, Julien Bobe, Andreas Jenny, Iban Seiliez. Lighting chaperone-mediated autophagy (CMA) evolution with an ancient LAMP: the existence of a functional CMA activity in fish. Autophagy, Taylor & Francis, 2020, 16 (10), pp.1918-1920. ⟨10.1080/15548627.2020.1797344⟩. ⟨hal-02924565⟩
  • Laury Lescat, Vincent Véron, Brigitte Mourot, Sandrine Péron, Nathalie Chenais, et al.. Chaperone-mediated autophagy in the light of evolution: Insight from fish. Molecular Biology and Evolution, Oxford University Press (OUP), 2020, 37 (10), pp.2887-2899. ⟨10.1093/molbev/msaa127⟩. ⟨hal-02945248⟩
  • Daniel Żarski, Aurélie Le Cam, Joanna Nynca, Christophe Klopp, Sławomir Ciesielski, et al.. Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca. Molecular Reproduction and Development, Wiley, 2020, 87 (9), pp.934-951. ⟨10.1002/mrd.23414⟩. ⟨hal-02935418⟩
  • Violaine Colson, Morgane Cousture, Danielle Damasceno, Claudiane Valotaire, Thuy Thao Vi Nguyen, et al.. Maternal temperature exposure triggers emotional and cognitive disorders and dysregulation of neurodevelopment genes in fish. PeerJ, PeerJ, 2019, 7, pp.1-26. ⟨10.7717/peerj.6338⟩. ⟨hal-01810424v2⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Charles Pineau, et al.. Genome editing reveals reproductive and developmental dependencies on specific types of vitellogenin in zebrafish (Danio rerio). Molecular Reproduction and Development, Wiley, 2019, 86 (9), pp.1168-1188. ⟨10.1002/mrd.23231⟩. ⟨hal-02278084⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Amélie Patinote, Laurent Journot, et al.. What makes a bad egg? Egg transcriptome reveals dysregulation of translational machinery and novel fertility genes important for fertilization. BMC Genomics, BioMed Central, 2019, 20:584 (1), pp.1-14. ⟨10.1186/s12864-019-5930-8⟩. ⟨hal-02185873⟩
  • Taina Rocha de Almeida, Maud Alix, Aurélie Le Cam, Christophe Klopp, Jérôme Montfort, et al.. Domestication may affect the maternal mRNA profile in unfertilized eggs, potentially impacting the embryonic development of Eurasian perch (Perca fluviatilis). PLoS ONE, Public Library of Science, 2019, 14 (12), pp.1-25. ⟨10.1371/journal.pone.0226878⟩. ⟨hal-02627554⟩
  • Tengfei Zhu, Geneviève Corraze, Elisabeth Plagnes-Juan, Jérôme Montfort, Julien Bobe, et al.. MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines. Aquaculture, Elsevier, 2019, 498, pp.132-142. ⟨10.1016/j.aquaculture.2018.08.058⟩. ⟨hal-01870570⟩
  • Emilie Cardona, Jérôme Bugeon, François Guivarc'H, Lionel Goardon, Stéphane Panserat, et al.. Positive impact of moderate food restriction on reproductive success of the rainbow trout Oncorhynchus mykiss. Aquaculture, Elsevier, 2019, 502, pp.280-288. ⟨10.1016/j.aquaculture.2018.12.057⟩. ⟨hal-01974617⟩
  • Qiaowei Pan, Romain Feron, Ayaka Yano, René Guyomard, Elodie Jouanno, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. PLoS Genetics, Public Library of Science, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩. ⟨inserm-02279967⟩
  • Ingo Braasch, Julien Bobe, Yann Guiguen, John H Postlethwait. Reply to: 'Subfunctionalization versus neofunctionalization after whole-genome duplication'.. Nature Genetics, Nature Publishing Group, 2018, 50 (7), pp.910-911. ⟨10.1038/s41588-018-0163-3⟩. ⟨hal-01827943⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Julien Bobe. Multiple vitellogenins in zebrafish (Danio rerio): quantitative inventory of genes, transcripts and proteins, and relation to egg quality. Fish Physiology and Biochemistry, Springer Verlag, 2018, 44 (6), pp.1509-1525. ⟨10.1007/s10695-018-0524-y⟩. ⟨hal-02442684⟩
  • Caroline Cheung, Jérémy Pasquier, Aurélien Bouleau, Thuy Thao Vi Nguyen, Franck Chesnel, et al.. Double maternal-effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, with essential but distinct functions are shared by fish and tetrapods. BMC Evolutionary Biology, BioMed Central, 2018, 18 (1), pp.1-16. ⟨10.1186/s12862-018-1281-3⟩. ⟨hal-01923030⟩
  • Caroline Cheung, Amélie Patinote, Yann Guiguen, Julien Bobe. Foxr1 is a novel maternal-effect gene in fish that is required for early embryonic success. PeerJ, PeerJ, 2018, 6, pp.1-20. ⟨10.7717/peerj.5534⟩. ⟨hal-01867990⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, Laure Henry, Clara Delahaye, et al.. MiR-202 controls female fecundity by regulating medaka oogenesis. PLoS Genetics, Public Library of Science, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩. ⟨hal-01871468⟩
  • Sébastien Elis, Alice Desmarchais, Emilie Cardona, Sophie Fouchécourt, Rozenn Dalbies-Tran, et al.. Genes involved in Drosophila melanogaster ovarian function are highly conserved throughout evolution. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2018, 10 (10), pp.2629-2642. ⟨10.1093/gbe/evy158⟩. ⟨hal-01991460⟩
  • Laury Lescat, Amaury Herpin, Brigitte Mourot, Vincent Veron, Yann Guiguen, et al.. CMA restricted to mammals and birds: myth or reality?. Autophagy, Taylor & Francis, 2018, 14 (7), pp.1267-1270. ⟨10.1080/15548627.2018.1460021⟩. ⟨hal-01823223⟩
  • Diana Zala, Uwe Schlattner, Thomas Desvignes, Julien Bobe, Aurélien Roux, et al.. The advantage of channeling nucleotides for very processive functions. F1000Research, Faculty of 1000, 2017, 6, pp.1-22. ⟨10.12688/f1000research.11561.2⟩. ⟨hal-02377267⟩
  • Lucie Marandel, Stéphane Panserat, Elisabeth Plagnes- Juan, Eva Arbenoits, José Luis Soengas, et al.. Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: towards a better understanding of the functions of multiple duplicates. BMC Genomics, BioMed Central, 2017, 18 (1), pp.342. ⟨10.1186/s12864-017-3727-1⟩. ⟨hal-01605942⟩
  • Esther Lubzens, Julien Bobe, Graham Young, Craig V. Sullivan. Maternal investment in fish oocytes and eggs: The molecular cargo and its contributions to fertility and early development. Aquaculture, Elsevier, 2017, Recent advances in fish gametes and embryo research, 472 (SI), pp.107-143. ⟨10.1016/j.aquaculture.2016.10.029⟩. ⟨hal-01595234⟩
  • Amine Bouchareb, Aurélie Le Cam, Jérôme Montfort, Stéphanie Gay, Thuy Thao Vi Nguyen, et al.. Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes). Scientific Reports, Nature Publishing Group, 2017, 7 (1), pp.1-11. ⟨10.1038/srep40241⟩. ⟨hal-01594581⟩
  • Daniel Żarski, Thuy Thao Vi Nguyen, Aurélie Le Cam, Jérôme Montfort, Gilbert Dutto, et al.. Transcriptomic profiling of egg quality in Sea bass (Dicentrarchus labrax) sheds light on genes involved in ubiquitination and translation. Marine Biotechnology, Springer Verlag, 2017, 19 (1), pp.102-115. ⟨10.1007/s10126-017-9732-1⟩. ⟨hal-01464069⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Regis Lavigne, et al.. Scrambled eggs: Proteomic portraits and novel biomarkers of egg quality in zebrafish (Danio rerio). PLoS ONE, Public Library of Science, 2017, 12 (11), pp.1-24. ⟨10.1371/journal.pone.0188084⟩. ⟨hal-01640969⟩
  • Jérémy Pasquier, Ingo Braasch, Peter Batzel, Cédric Cabau, Jérôme Montfort, et al.. Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome. Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, Wiley, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩. ⟨hal-01788671⟩
  • R. Chaube, A. Rawat, R.M. Inbaraj, Julien Bobe, Yann Guiguen, et al.. Identification and characterization of a catechol-o-methyltransferase cDNA in the catfish Heteropneustes fossilis: tissue, sex and seasonal variations, and effects of gonadotropin and 2-hydroxyestradiol-17β on mRNA expression. General and Comparative Endocrinology, Elsevier, 2017, 246, pp.129-141. ⟨10.1016/j.ygcen.2016.12.001⟩. ⟨hal-02626727⟩
  • Cédric Cabau, Frédéric Escudie, Anis Djari, Yann Guiguen, Julien Bobe, et al.. Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies. PeerJ, PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩. ⟨hal-01506620⟩
  • Sylvain Bertho, Jérémy Pasquier, Qiaowei Pan, Gaël Le Trionnaire, Julien Bobe, et al.. Foxl2 and its relatives are evolutionary conserved players in gonadal sex differentiation. Sexual Development, Karger, 2016, 10 (3), pp.111-29. ⟨10.1159/000447611⟩. ⟨hal-01349550⟩
  • Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, et al.. Corrigendum: The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics, Nature Publishing Group, 2016, 48 (6), pp.700-700. ⟨hal-01594468⟩
  • Ingo Braasch, Andrew R. Gehrke, Jeramiah J. Smith, Kazuhiko Kawasaki, Tereza Manousaki, et al.. The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons. Nature Genetics, Nature Publishing Group, 2016, 48 (4), pp.427-437. ⟨10.1038/ng.3526⟩. ⟨hal-01595410⟩
  • Benjamin Geffroy, Florian Guilbaud, Elsa Amilhat, Laurent Beaulaton, Matthias Vignon, et al.. Sexually dimorphic gene expressions in eels: useful markers for early sex assessment in a conservation context. Scientific Reports, Nature Publishing Group, 2016, 6 (1), pp.1-11. ⟨10.1038/srep34041⟩. ⟨hal-01595531⟩
  • Amélie Juanchich, Philippe Bardou, Olivier Rué, Jean-Charles Gabillard, Christine Gaspin, et al.. Characterization of an extensive rainbow trout miRNA transcriptome by next generation sequencing. BMC Genomics, BioMed Central, 2016, 17:164 (1), pp.1-12. ⟨10.1186/s12864-016-2505-9⟩. ⟨hal-01509042⟩
  • Jeremy Pasquier, Cédric Cabau, Thuy Thao Vi Nguyen, Elodie Jouanno, Dany Severac, et al.. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.. BMC Genomics, BioMed Central, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩. ⟨hal-01487023⟩
  • Anna Wargelius, Tomasz Furmanek, Jérôme Montfort, Aurélie Le Cam, Lene Kleppe, et al.. A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species. Molecular Reproduction and Development, Wiley, 2015, 82, pp.397-404. ⟨10.1002/mrd.22487⟩. ⟨hal-01205122⟩
  • C. Fernández-Díez, S. González-Rojo, Jérôme Montfort, Aurélie Le Cam, Julien Bobe, et al.. Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout [i](Oncorhynchus mykiss)[/i]. Reproduction, BioScientifica, 2015, 149 (1), pp.101-111. ⟨10.1530/REP-14-0382⟩. ⟨hal-01183015⟩
  • Julien Bobe. Egg quality in fish: present and future challenges. Animal Frontiers, American Society of Animal Science, 2015, 5 (1), pp.66-72. ⟨10.2527/af.2015-0010⟩. ⟨hal-02629618⟩
  • Thomas Desvignes, Thuy Thao Vi Nguyen, Frank Chesnel, Aurélien Bouleau, Christian Fauvel, et al.. X-linked retinitis pigmentosa 2 is a novel maternal-effect gene required for left-right asymmetry in zebrafish. Biology of Reproduction, Society for the Study of Reproduction, 2015, 93 (2), pp.42. ⟨10.1095/biolreprod.115.130575⟩. ⟨hal-01206344⟩
  • Hélène Rime, Thuy Thao Vi Nguyen, Kévin Ombredane, Alexis Fostier, Julien Bobe. Effects of the anti-androgen cyproterone acetate (CPA) on oocyte meiotic maturation in rainbow trout [i](Oncorhynchus mykiss)[/i]. Aquatic Toxicology, Elsevier, 2015, 164, pp.34-42. ⟨10.1016/j.aquatox.2015.04.009⟩. ⟨hal-01182848⟩
  • E. Marivin, B. Mourot, P. Loyer, H. Rime, Julien Bobe, et al.. Transfection of isolated rainbow trout, Oncorhynchus mykiss, granulosa cells through chemical transfection and electroporation at 12 °C. General and Comparative Endocrinology, Elsevier, 2015, 221, pp.165-172. ⟨10.1016/j.ygcen.2015.03.012⟩. ⟨hal-01151624⟩
  • Ingo Braasch, Yann Guiguen, Ryan Loker, John H Letaw, Allyse Ferrara, et al.. Connectivity of vertebrate genomes: Paired-related homeobox (Prrx) genes in spotted gar, basal teleosts, and tetrapods.. Comparative Biochemistry and Physiology - Part C: Toxicology and Pharmacology, Elsevier, 2014, 163, pp.24-36. ⟨10.1016/j.cbpc.2014.01.005⟩. ⟨hal-01205078⟩
  • Aurélien Bouleau, Thomas Desvignes, Juan Martin Traverso, Thuy Thao Vi Nguyen, Franck Chesnel, et al.. Maternally inherited npm2 mRNA is crucial for egg developmental competence in zebrafish.. Biology of Reproduction, Society for the Study of Reproduction, 2014, 91 (2), pp.43. ⟨10.1095/biolreprod.114.119925⟩. ⟨hal-01120330⟩
  • Elisa Marivin, Ayaka Yano, Adèle Branthonne, Thuy Thao Vi Nguyen, Alexis Fostier, et al.. Sex hormone-binding globulins characterization and gonadal gene expression during sex differentiation in the rainbow trout, Oncorhynchus mykiss.. Molecular Reproduction and Development, Wiley, 2014, 81, pp.757-765. ⟨10.1002/mrd.22344⟩. ⟨hal-01205088⟩
  • Camille Berthelot, Frédéric Brunet, Domitille Chalopin, Amélie Juanchich, Maria Bernard, et al.. The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.. Nature Communications, Nature Publishing Group, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩. ⟨hal-01193812⟩
  • Florence Phocas, Julien Bobe, Loys Bodin, Bernard Charley, Jean-Yves Dourmad, et al.. Des animaux plus robustes : un enjeu majeur pour le développement durable des productions animales nécessitant l'essor du phénotypage fin et à haut débit. INRA Productions Animales, Paris: INRA, 2014, 27 (3), pp.181-194. ⟨hal-01173636⟩
  • Amélie Juanchich, Aurélie Le Cam, Jérôme Montfort, Yann Guiguen, Julien Bobe. Identification of differentially expressed miRNAs and their potential targets during fish ovarian development. Biology of Reproduction, Society for the Study of Reproduction, 2013, 88 (5), pp.128, 1-11. ⟨10.1095/biolreprod.112.105361⟩. ⟨hal-01205066⟩
  • Hervé Migaud, Gordon Bell, Elsa Cabrita, Brendan Mcandrew, Andrew Davie, et al.. Gamete quality and broodstock management in temperate fish. Reviews in Aquaculture, Wiley, 2013, 5 (S1), pp.S194-S223. ⟨10.1111/raq.12025⟩. ⟨hal-01205068⟩
  • Thomas Desvignes, Alexis Fostier, Christian Fauvel, Julien Bobe. The Nme gene family in fish.. Fish Physiology and Biochemistry, Springer Verlag, 2013, 39 (1), pp.53-58. ⟨10.1007/s10695-012-9639-8⟩. ⟨hal-01205059⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Hélène Jammes, Jean-Jacques Lareyre, et al.. Do not put all teleosts in one net: focus on the sox2 and pou2 genes. Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, Elsevier, 2013, 164, pp.69-79. ⟨10.1016/j.cbpb.2012.10.005⟩. ⟨hal-01000747⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Pierre-Yves Le Bail. nanog 5'-upstream sequence, DNA methylation, and expression in gametes and early embryo reveal striking differences between teleosts and mammals. Gene, Elsevier, 2012, 492, pp.130-137. ⟨10.1016/j.gene.2011.10.037⟩. ⟨hal-01205039⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Pierre-Yves Le Bail. Evolutionary history of c-myc in teleosts and characterization of the duplicated c-myca genes in goldfish embryos. Molecular Reproduction and Development, Wiley, 2012, 79 (2), pp.85-96. ⟨10.1002/mrd.22004⟩. ⟨hal-01205046⟩
  • Cathy Charlier, Jérôme Montfort, Olivier Chabrol, Daphné Brisard, Thuy Thao Vi Nguyen, et al.. Oocyte-somatic cells interactions, lessons from evolution.. BMC Genomics, BioMed Central, 2012, 13 (1), pp.560. ⟨10.1186/1471-2164-13-560⟩. ⟨hal-00753310⟩
  • Philippe Monget, Julien Bobe, Alain Gougeon, Stéphane Fabre, Danielle Monniaux, et al.. The ovarian reserve in mammals: a functional and evolutionary perspective.. Molecular and Cellular Endocrinology, Elsevier, 2012, 356 (1-2), pp.2-12. ⟨10.1016/j.mce.2011.07.046⟩. ⟨hal-00851759⟩
  • Aurélie Le Cam, Julien Bobe, Olivier Bouchez, Cédric Cabeau, Olivier Kah, et al.. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Gene, Elsevier, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩. ⟨hal-01205069⟩
  • Aurélie Le Cam, Julien Bobe, Olivier Bouchez, Cédric Cabau, Olivier Kah, et al.. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Gene, Elsevier, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩. ⟨hal-00753316⟩
  • Maella Gohin, Pascal Bodinier, Alexis Fostier, Franck Chesnel, Julien Bobe. Aromatase is expressed and active in the rainbow trout oocyte during final oocyte maturation.. Molecular Reproduction and Development, Wiley, 2011, 78 (7), pp.510-8. ⟨10.1002/mrd.21335⟩. ⟨inserm-00604822⟩
  • Maella Gohin, Pascal Bodinier, Alexis Fostier, Julien Bobe, Franck Chesnel. Aromatase expression in Xenopus oocytes: a three cell-type model for the ovarian estradiol synthesis.. Journal of Molecular Endocrinology, BioScientifica, 2011, 47 (2), pp.241-50. ⟨10.1530/JME-11-0080⟩. ⟨inserm-00610146⟩
  • Thomas Desvignes, Christian Fauvel, Julien Bobe. The nme gene family in zebrafish oogenesis and early development. Naunyn-Schmiedeberg's Archives of Pharmacology, Springer Verlag, 2011, 384 (4-5), pp.439-449. ⟨10.1007/s00210-011-0619-9⟩. ⟨hal-01205026⟩
  • Philippe Monget, Julien Bobe, A. Gougeon. La néo-ovogenèse dans l'ovaire des vertébrés : une vision expérimentale et évolutive. Médecine Thérapeutique / Endocrinologie, John Libbey Eurotext Ltd, 2011, 13 (1), pp.4-10. ⟨hal-01129510⟩
  • Maella Gohin, Julien Bobe, Franck Chesnel. Comparative transcriptomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two non-mammalian vertebrates.. BMC Genomics, BioMed Central, 2010, 11 (1), pp.18. ⟨10.1186/1471-2164-11-18⟩. ⟨inserm-00451995v2⟩
  • Esther Lubzens, Graham Young, Julien Bobe, Joan Cerda. Oogenesis in teleosts: How fish eggs are formed. General and Comparative Endocrinology, Elsevier, 2010, 165 (3), pp.367-389. ⟨10.1016/j.ygcen.2009.05.022⟩. ⟨hal-01205005⟩
  • Diego Crespo, Josep V. Planas, Julien Bobe. Lipopolysaccharide administration in preovulatory rainbow trout [i](Oncorhynchus mykiss)[/i] reduces egg quality. Aquaculture, Elsevier, 2010, 300, pp.240-242. ⟨10.1016/j.aquaculture.2010.01.010⟩. ⟨hal-01205021⟩
  • Julien Bobe. L'administration préovulatoire de lipopolysaccharides altère la qualité des ovules de truite arc-en-ciel. Aquafilia, 2010, 38, pp.19. ⟨hal-02655008⟩
  • Hélène Rime, Thuy Nguyen, Julien Bobe, Alexis Fostier, Gilles Monod. [/i]Prochloraz-induced oocyte maturation in rainbow trout ([i]Oncorhynchus mykiss[/i]), a molecular and functional analysis[i]. Toxicological Sciences, Oxford University Press (OUP), 2010, 118 (1), pp.61-70. ⟨10.1093/toxsci/kfq255⟩. ⟨hal-01205007⟩
  • Thomas Desvignes, Pierre Pontarotti, Julien Bobe. Nme Gene Family Evolutionary History Reveals Pre-Metazoan Origins and High Conservation between Humans and the Sea Anemone, Nematostella vectensis. PLoS ONE, Public Library of Science, 2010, 5:11 (e15506), pp.1-12. ⟨10.1371/journal.pone.0015506⟩. ⟨hal-01204995⟩
  • Julien Bobe, Catherine Labbé. Egg and sperm quality in fish. General and Comparative Endocrinology, Elsevier, 2010, 165, pp.535-548. ⟨10.1016/j.ygcen.2009.02.011⟩. ⟨hal-01205016⟩
  • Carmen Doñate, Joan Carles Balasch, Agnes Callol, Julien Bobe, Lluis Tort, et al.. The effects of immunostimulation through dietary manipulation in the rainbow trout; evaluation of mucosal immunity. Marine Biotechnology, Springer Verlag, 2010, 12, pp.88-99. ⟨10.1007/S10126-009-9203-4⟩. ⟨hal-01205009⟩
  • Diego Crespo, Emilie Bonnet, Nerea Roher, Simon Mackenzie, Aleksei Krasnov, et al.. Cellular and molecular evidence for a role of tumor necrosis factor alpha in the ovulatory mechanism of trout. Reproductive Biology and Endocrinology, BioMed Central, 2010, 8 (34), pp.1-14. ⟨10.1186/1477-7827-8-34⟩. ⟨hal-01205017⟩
  • Julien Bobe, Yann Guiguen, Alexis Fostier. Diversity and biological significance of sex hormone-binding globulin in fish, an evolutionary perspective. Molecular and Cellular Endocrinology, Elsevier, 2009, 316 (1), pp.66. ⟨10.1016/j.mce.2009.09.017⟩. ⟨hal-00550179⟩
  • Paul Erwan Mauger, Catherine Labbé, Julien Bobe, Chantal Cauty, Isabelle Leguen, et al.. Characterization of goldfish fin cells in culture: some evidence of an epithelial cell profile.. Comparative Biochemistry and Physiology - Part B: Biochemistry and Molecular Biology, Elsevier, 2009, 152 (3), pp.205-15. ⟨10.1016/j.cbpb.2008.11.003⟩. ⟨hal-00676723⟩
  • Julien Bobe, Thuy Thao Vi Nguyen, Alexis Fostier. Ovarian function of the trout preovulatory ovary: New insights from recent gene expression studies. Comparative Biochemistry and Physiology - Part A: Molecular and Integrative Physiology, Elsevier, 2009, 153 (1), pp.63-68. ⟨10.1016/j.cbpa.2008.10.021⟩. ⟨hal-02665403⟩
  • Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe. Nme protein family evolutionary history, a vertebrate perspective. BMC Evolutionary Biology, BioMed Central, 2009, 9:256, pp.1-25. ⟨10.1186/1471-2148-9-256⟩. ⟨hal-02663889⟩
  • Julien Bobe, Sophie Mahé, Thuy Thao Vi Nguyen, Hélène Rime, Denise Vizziano, et al.. A novel, functional, and highly divergent sex hormone-binding globulin that may participate in the local control of ovarian functions in salmonids. Endocrinology, Endocrine Society, 2008, 149 (6), pp.2980-2989. ⟨10.1210/en.2007-1652⟩. ⟨hal-02668537⟩
  • Joan Cerda, Julien Bobe, Pierre J. Babin, Arie Admon, Esther Lubzens. Functional genomics and proteomic approaches for the study of gamete formation and viability in farmed finfish. Reviews in Fisheries Science, Taylor & Francis, 2008, 16, pp.54-70. ⟨10.1080/10641260802324685⟩. ⟨hal-02664918⟩
  • Julien Bobe, Thuy Thao Vi Nguyen, Sophie Mahé, Philippe Monget. In silico identification and molecular characterization of genes predominantly expressed in the fish oocyte. BMC Genomics, BioMed Central, 2008, 9:499, pp.1-16. ⟨10.1186/1471-2164-9-499⟩. ⟨hal-02668508⟩
  • Julien Bobe. Caractérisation détaillée de la qualité des ovules de truite arc-en-ciel et conditions d'élevage des géniteurs. Aquafilia, 2007, 21, pp.16. ⟨hal-02653655⟩
  • Alexis Fostier, Julien Bobe. Characterization of rainbow trout egg quality: A case study using four different breeding protocols, with emphasis on the incidence of embryonic malformations. Theriogenology, Elsevier, 2007, 67, pp.786-794. ⟨10.1016/j.theriogenology.2006.10.008⟩. ⟨hal-02655438⟩
  • Alexis Fostier, Julien Bobe. Microarray-based analysis of fish egg quality after natural or controlled ovulation. BMC Genomics, BioMed Central, 2007, 8:55, pp.1-17. ⟨10.1186/1471-2164-8-55⟩. ⟨hal-02666486⟩
  • Jérôme Montfort, Diane Esquerre, Karine Hugot, Alexis Fostier, Julien Bobe. Effect of photoperiod manipulation on rainbow trout (Oncorhynchus mykiss) egg quality: A genomic study. Aquaculture, Elsevier, 2007, 268 (1-4), pp.13-22. ⟨10.1016/j.aquaculture.2007.04.027⟩. ⟨hal-02664448⟩
  • Barzan Bahrami Kamangar, Jean-Charles Gabillard, Julien Bobe. Insulin-like growth factor-binding protein (IGFBP)-1, -2, -3, -4, -5, -6 and IGFBP-related protein 1 (IGFBP-rP1) during rainbow trout postvitellogenesis and oocyte maturation: molecular characterization, expression profiles, and hormonal regulation. Endocrinology, Endocrine Society, 2006, 147 (5), pp.2399-2410. ⟨10.1210/en.2005-1570⟩. ⟨hal-02661717⟩
  • Julien Bobe, Jérôme Montfort, Thuy Thao Vi Nguyen, Alexis Fostier. Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays. Reproductive Biology and Endocrinology, BioMed Central, 2006, 4:39, pp.1-16. ⟨10.1186/1477-7827-4-39⟩. ⟨hal-02658072⟩
  • Brigitte Mourot, Thuy Thao Vi Nguyen, Alexis Fostier, Julien Bobe. Two unrelated putative membrane-bound progestin receptors, progesterone membrane receptor component 1 (PGMRC1) and membrane progestin receptor (mPR) beta, are expressed in the rainbow trout oocyte and exhibit similar ovarian expression patterns. Reproductive Biology and Endocrinology, BioMed Central, 2006, 4:6, pp.1-14. ⟨10.1186/1477-7827-4-6⟩. ⟨hal-02658809⟩
  • Sylvain Milla, Bernard Jalabert, Hélène Rime, Patrick Prunet, Julien Bobe. Hydration of rainbow trout oocyte during meiotic maturation and in vitro regulation by 17,20ß-dihydroxy-4-pregnen-3-one and cortisol. Journal of Experimental Biology, Cambridge University Press, 2006, 209, pp.1147-1156. ⟨10.1242/jeb.02094⟩. ⟨hal-02659421⟩
  • Julien Bobe. Vieillissement des ovules et performance de la reproduction chez la truite arc-en-ciel. Aquafilia, 2005, 6, pp.24. ⟨hal-02671968⟩
  • S. Aegerter, Bernard Jalabert, Julien Bobe. Large-scale real-time PCR analysis of mRNA abundance in rainbow trout eggs in relationship with egg quality and post-ovulatory ageing. Molecular Reproduction and Development, Wiley, 2005, 72, pp.377-385. ⟨hal-02676693⟩
  • Hélène Rime, Nathalie Guitton, Charles Pineau, - Bonnet Emilie, Julien Bobe, et al.. Post-ovulatory ageing and egg quality: A proteomic analysis of rainbow trout coelomic fluid.. Reproductive Biology and Endocrinology, BioMed Central, 2004, 2, pp.1-10. ⟨10.1186/1477-7827-2-26⟩. ⟨hal-02678718⟩
  • - Aegerter Sandrine, Bernard Jalabert, Julien Bobe. Messenger RNA stockpile of cyclin B, insulin-like growth factor I, insulin-like growth factor II, insulin-like growth factor receptor Ib, and p53 in the rainbow trout oocyte in relation with developmental competence. Molecular Reproduction and Development, Wiley, 2004, 67, pp.127-135. ⟨hal-02683546⟩
  • Gilles Monod, Hélène Rime, Julien Bobe, Bernard Jalabert. Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation in rainbow trout (Oncorhynchus mykiss). Marine Environmental Research, Elsevier, 2004, 58 (2-5), pp.143-146. ⟨hal-02677127⟩
  • Julien Bobe, Thuy Thao Vi Nguyen, Bernard Jalabert. Targeted gene expression profiling in the Rainbow trout (Oncorhynchus mykiss) ovary during maturational competence acquisition and oocyte maturation. Biology of Reproduction, Society for the Study of Reproduction, 2004, 71, pp.73-82. ⟨hal-02682674⟩
  • - Aegerter Sandrine, Bernard Jalabert, Julien Bobe. mRNA stockpile and egg quality in rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry, Springer Verlag, 2003, 28, pp.317-318. ⟨hal-02671124⟩
  • - Bonnet Emilie, Bernard Jalabert, Julien Bobe. A 3-day in vitro storage of rainbow trout (Oncorhynchus mykiss) unfertilised eggs in coelomic fluid at 12øC does not affect developmental success. Cybium : Revue Internationale d’Ichtyologie, Paris : Muséum national d'histoire naturelle, 2003, 27 (1), pp.47-51. ⟨hal-02672376⟩
  • Julien Bobe, - Maugars Gersende, Thuy Thao Vi Nguyen, Bernard Jalabert. Specific gene expression profiles are associated with follicular maturational competence acquisition in rainbow trout (Oncorhynchus mykiss). Fish Physiology and Biochemistry, Springer Verlag, 2003, 28, pp.309-311. ⟨hal-02670168⟩
  • Julien Bobe, - Maugars Gersende, Thuy Thao Vi Nguyen, Hélène Rime, Bernard Jalabert. Rainbow trout follicular maturational competence acquisition is associated with an increased expression of follicle stimulating hormone receptor and insulin-like growth factor 2 messenger RNAs. Molecular Reproduction and Development, Wiley, 2003, 66, pp.46-53. ⟨hal-02669841⟩
  • Julien Bobe, Frederick William Goetz. Molecular cloning and expression of a TNF receptor and two TNF ligands in the fish ovary.. Comparative Biochemistry and Physiology Part B: Comparative Biochemistry, Elsevier, 2001, 129, pp.475-481. ⟨hal-02670891⟩
  • Julien Bobe, Frederick William Goetz. An ovarian progastricsin is present in the trout coelomic fluid after ovulation.. Biology of Reproduction, Society for the Study of Reproduction, 2001, 64, pp.1048-1055. ⟨hal-02671610⟩
  • Julien Bobe, Frederick William Goetz. A novel osteopontin-like protein is expressed in the trout ovary during ovulation.. FEBS Letters, Wiley, 2001, 489, pp.119-124. ⟨hal-02672368⟩
  • Julien Bobe, Frederick William Goetz. Cysteine protease inhibitor is specifically expressed in pre- and early-vitellogenic oocytes from the brook trout periovulatory ovary.. Molecular Reproduction and Development, Wiley, 2001, 60, pp.312-318. ⟨hal-02676648⟩
  • Jamie T. Bridgham, Julien Bobe, Frederick William Goetz, Alan L. Johnson. Conservation of death receptor-6 in avian and piscine vertebrates. Biochemical and Biophysical Research Communications, Elsevier, 2001, 284 (5), pp.1109-1115. ⟨10.1006/bbrc.2001.5093⟩. ⟨hal-02680110⟩
  • Julien Bobe, Frederick William Goetz. A tumor necrosis factor decoy receptor homologue is up-regulated in the brook trout (Salvelinus fontinalis) ovary at the completion of ovulation.. Biology of Reproduction, Society for the Study of Reproduction, 2000, 62, pp.420-426. ⟨hal-02693463⟩
  • Julien Bobe, Sylvie André, Benoit Fauconneau. Embryonic muscle development in Rainbow trout (Oncorhynchus mykiss) : a scanning electron microscopy and immunohistological study.. Journal of Experimental Zoology, Wiley, 2000, 286, pp.379-389. ⟨hal-02689389⟩
  • Julien Bobe, Frederick William Goetz. A S100 homologue mRNA isolated by differential display PCR is down-regulated in the brook trout (Salvelinus fontinalis) post-ovulatory ovary.. Gene, Elsevier, 2000, 257, pp.187-194. ⟨hal-02691591⟩

Conference papers112 documents

  • Lucie Marandel, Huihua Hu, J. A. Mennigen, Julien Bobe, Geneviève Corraze, et al.. Consequences on gametogenesis and reproduction performances of a high carbohydrate nutrition during the whole reproductive cycle of males and females trout. Experimental Biology 2019, Apr 2019, Orlando, United States. pp.591.1. ⟨hal-02154626⟩
  • Julien Bobe. Novel teleost whole-genome sequences for studying genome evolution after whole genome duplication. CIGENE seminars schedule spring 2019, Norwegian University of Life Sciences. NOR., Feb 2019, Oslo, Norway. ⟨hal-02011373⟩
  • D. Żarski, Aurélie Le Cam, J. Nynca, Christophe Klopp, S. Ciesielski, et al.. Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcripts. Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p. ⟨hal-02317179⟩
  • Daniel Zarski, Joanna Nynca, Aurélie Le Cam, Christophe Klopp, Sławomir Ciesielski, et al.. Transcriptomic profiling reveals novel biomarkers of egg quality in domesticated pikeperch, Sander lucioperca. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.69-70. ⟨hal-02282331⟩
  • Taina Rocha de Almeida, Julien Bobe, Aurélie Le Cam, Christophe Klopp, Jérôme Montfort, et al.. Difficulties to compare egg quality: insights from a transcriptomic analysis. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62. ⟨hal-02282230⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Stéphanie Gay, Amélie Patinote, Emilie Cardona, et al.. What makes a fish egg able to be fertilized and subsequently develop into an embryo: new insights from CRISPR/Cas9 genome editing in model species. Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. ⟨hal-02284510⟩
  • Julien Bobe, Thuy Thao Vi Nguyen. Gènes impliqués dans la fertilité femelle conservés au cours de l'évolution. 3. Journées des Installations Expérimentales LPGP, Jun 2019, Rennes, France. ⟨hal-03169655⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Stéphanie Gay, Amélie Patinote, Emilie Cardona, et al.. What makes a good egg: new insights from CRISPR/Cas9 genome editing in fish model species. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.71-72. ⟨hal-02282328⟩
  • Emilie Cardona, Jérôme Bugeon, Emilien Segret, Julien Bobe. VisEgg: an automatic phenotyping tool to assess rainbow trout unfertilized egg viability. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.68-68. ⟨hal-02282238⟩
  • Julien Bobe, Jean-Charles Gabillard, Yann Guiguen, Catherine Labbé. Présentation du Laboratoire. Space 2019, Sep 2019, Rennes, France. ⟨hal-02935571⟩
  • Aurélie Guého, Hélène Rime, Emmanuelle Com, Régis Lavigne, Blandine Guevel, et al.. Functional and proteomic characterisation of salmonid coelomic fluid. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.59-59. ⟨hal-03186872⟩
  • Emilie Cardona, Jérôme Montfort, Hughes Parrinello, Laurent Journot, Julien Bobe, et al.. Circulating microRNA in plasma and ovarian fluid as potential non invasive biomarkers of nutrition and reproduction of female rainbow trout (Oncorhynchus mykiss). Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. ⟨hal-02284505⟩
  • Emilie Cardona, Jérôme Bugeon, François Guivarc'H, Lionel Goardon, Stéphane Panserat, et al.. Impact positif d’une restriction alimentaire modérée sur les performances de reproduction de la truite arc en ciel Oncorhynchus mykiss. 6. Journées de la Recherche Filière Piscicole, Institut Technique de l'Aviculture et des Elevages de Petits Animaux (ITAVI). FRA., Jul 2019, Paris, France. ⟨hal-02182571⟩
  • Amaury Herpin, Julien Bobe. L'usage d'édition de génomes chez les poissons modèles. Comité d'éthique Inra Cirad Ifremer, Sep 2018, Jouy-en-Josas, France. ⟨hal-01913020⟩
  • Lucie Marandel, Stéphane Panserat, Elisabeth Plagnes- Juan, Jose Luis Soengas, Julien Bobe. Evolutionary history of glucose-6-phosphatase encoding genes in vertebrate lineages: toward a better understanding of the functions of multiple duplicates. 13. International Congress on the Biology of Fish, Jul 2018, Calgary, Canada. 134 p. ⟨hal-01901330⟩
  • Taina Rocha de Almeida, M. Alix, B. Schaerlinger, Aurélie Le Cam, Jérôme Montfort, et al.. A transcriptomic comparison suggests an influence of the domestication process on egg quality in Eurasian Perch (Perca fluviatilis). 11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p. ⟨hal-01812820⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Charles Pineau, et al.. Genome editing reveals developmental dependencies on specific types of vitellogenesis in Zebrafish (Danio rerio). 11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p. ⟨hal-01809605⟩
  • Lucie Marandel, Jingwei Liu, Julien Bobe, Jose Luis Soengas, Jan Mennigen, et al.. Régulations épigénétiques induites par les nutriments chez la truite : modulation et conséquences. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 98 p. ⟨hal-01901323⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Amélie Patinote, D. Zarski, et al.. Molecular portrait of egg quality and novel maternal-effect genes. 11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA, Jun 2018, Manaus, Brazil. 251 p. ⟨hal-01809604⟩
  • Tengfei Zhu, Geneviève Corraze, Elisabeth Plagnes- Juan, Jérôme Montfort, Julien Bobe, et al.. Expression of miRNA and target genes was affected by genetic selection of rainbow trout and plant-based diet. Aquaculture Europe 2017, European Aquaculture Society (EAS). BEL., Oct 2017, Dubrovnik, Croatia. ⟨hal-01606808⟩
  • Julien Bobe, Violette Thermes. Maternal-effect genes and egg quality: usual suspects and new players. 6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p. ⟨hal-01595100⟩
  • Lucie Marandel, Wei Wei Dai, Sandrine Skiba-Cassy, José Luis Soengas, Julien Bobe, et al.. New insights into the understanding of the carnovorous-related nutritionalmetabolism in rainbow trout through genes duplication : the glucose-6-phosphatase trail. 16. Congreso Nacional de Acuicultura, Oct 2017, Saragosse, Spain. ⟨hal-01901311⟩
  • Taina Rocha de Almeida, Bérénice Schaerlinger, Aurélie Le Cam, Maud Alix, Jérôme Montfort, et al.. Transcriptomic analysis of Eurasian perch (Perca fluviatilis) eggs assigned to distinct groups of quality. 6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p. ⟨hal-01579299⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Charles Pineau, et al.. CRISPR/Cas9 disturbance of the multiple vitellogenin (vtg) system: essential functions of different vtg types during zebrafish egg, embryo and larval development. 6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p. ⟨hal-01595005⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, Laure Henry, Julien Bobe, et al.. Mir-202 knock-out in medaka drastically impairs female fertility. 2. Journées scientifiques GDR 3606 REPRO : ReproSciences 2017, Centre National de la Recherche Scientifique (CNRS). FRA., Apr 2017, Tours, France. ⟨hal-01594638⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, Laure Henry, Julien Bobe, et al.. MiR-202 knock-out in medaka drastically impairs female fertility. 10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary. ⟨hal-01603044⟩
  • Jérémy Pasquier, Cédric Cabau, Thuy Thao Vi Nguyen, Elodie Dupin-De-Beyssat, Dany Severac, et al.. Evolution of gene expression in fish: The PhyloFish database. 8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States. ⟨hal-01607208⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Amélie Patinote, C. Reynes, et al.. Egg transcriptome reveals molecular signature that can predict developmental competence and novel maternal-effect genes. 10. European Zebrafish Meeting, Jul 2017, Budapest, Hungary. ⟨hal-01604755⟩
  • Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Dupin-De-Beyssat, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes. 1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France. ⟨hal-01594642⟩
  • Ozlem Yilmaz, Emmanuelle Com, Regis Lavigne, Charles Pineau, Julien Bobe. Proteomics of egg quality in zebrafish. 4. International Symposium on Genomics in Aquaculture, University of Nordland. NOR., Apr 2016, Athens, Greece. ⟨hal-02742946⟩
  • Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Dupin-De-Beyssat, et al.. Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes. 19. European Testis Workshop, Jun 2016, Saint-Malo, France. ⟨hal-02742995⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Amélie Patinote, Julien Bobe. Novel maternal transcripts that define fish egg quality. 4. International Symposium on Genomics in Aquaculture, University of Nordland. NOR., Apr 2016, Athens, Greece. ⟨hal-02742947⟩
  • Amélie Juanchich, Kai Ove Skaftnesmo, Violette Thermes, Julien Bobe, Anna Wargelius. Analyzing microrna repertoires in eggs from 4 fish species can reveal secrets of both life history traits and embryo viability/quality. 5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p. ⟨hal-02740533⟩
  • Julien Bobe. Le poisson zèbre comme modèle d'étude de la qualité ovocytaire. 1. Journées des Installations Expérimentales LPGP, Dec 2015, Rennes, France. ⟨hal-02798223⟩
  • Ozlem Yilmaz, Emmanuelle Com, Regis Lavigne, Charles Pineau, Julien Bobe. Proteomics of egg quality in zebrafish. 5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p. ⟨hal-02741667⟩
  • Ozlem Yilmaz, Emmanuelle Com, Regis Lavigne, Charles Pineau, Julien Bobe. Proteomics of egg quality in zebrafish. Journée d'animation de l'Axe Protéomique, Plateforme Génomique Santé Biogenouest®. FRA., Dec 2015, Rennes, France. ⟨hal-02796846⟩
  • Amine Bouchareb, Aurélie Le Cam, Jérôme Montfort, Stéphanie Gay, Thuy Thao Vi Nguyen, et al.. Identification of novel ovarian predominant MiRNAs in medaka. 9. European Zebrafish Meeting, Jun 2015, Oslo, Norway. ⟨hal-02742954⟩
  • Aurélien Bouleau, Jérémy Pasquier, Thomas Desvignes, Juan Martin Traverso, Thuy Thao Vi Nguyen, et al.. Contribution of nucleoplasmin genes to egg developmental competence in fish. 5. International Workshop on the Biology of Fish Gametes, Università Politecnica delle Marche. ITA., Sep 2015, Ancona, Italy. 290 p. ⟨hal-02740660⟩
  • Qiaowei Pan, Ayaka Yano, Jennifer Anderson, Julien Bobe, Elodie Jouanno, et al.. Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes. 7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States. ⟨hal-02741864⟩
  • Agnes Bardonnet, Benjamin Geffroy, Julien Bobe, Florian Guilbaud, Elsa Amilhat, et al.. Evolution de la capacité de marqueurs spécifiques du sexe à prédire le futur sexe de juvéniles d'anguille dans deux populations à sex-ratio biaisé. Rencontres Anguille du GRISAM, Gis Poissons Migrateurs Amphihalins (GRISAM). FRA., Nov 2015, Boulogne sur mer, France. ⟨hal-01901375⟩
  • Julien Bobe, Aurélien Bouleau, Caroline Cheung, Ozlem Yilmaz, Thuy Thao Vi Nguyen, et al.. What makes a good egg ? Molecular mechanisms defining egg developmental competence in teleost fish. 1. Journées du GdR 3606 Repro, Université de Rennes 1 (UR1). Rennes, FRA., Apr 2015, Rennes, France. 105 p. ⟨hal-01897087⟩
  • Elisa Marivin, Aurélien Courteille, Pascal Bodinier, Brigitte Mourot, Yann Guiguen, et al.. Some characteristics and functions of SHBGB, a newly discovered sex hormone binding globulin expressed in granulosa cells. 11. International Congress on the Biology of Fish, Heriot-Watt University. Edinburgh, GBR., Aug 2014, Edinburgh, United Kingdom. 255 p. ⟨hal-02743774⟩
  • Ingo Braasch, Peter Batzel, Angel Amores, Allyse Ferrara, Quenton Fontenot, et al.. Ohnologs: Why do basal bony fish hold‘em but crown groups fold‘em?. 5. Meeting of the European Society for Evolutionary Developmental Biology, University of Vienna [Vienna]. AUT., Jul 2014, Vienne, Austria. ⟨hal-02743811⟩
  • Elisa Marivin, Brigitte Mourot, Aurélien Courteille, Hélène Rime, Julien Bobe, et al.. Isolation, culture and characterization of rainbow trout granulosa cells. 11. International Congress on the Biology of Fish, Heriot-Watt University. Edinburgh, GBR., Aug 2014, Edinburgh, United Kingdom. 255 p. ⟨hal-02743773⟩
  • Elisa Marivin, Brigitte Mourot, P. Loyer, Hélène Rime, Julien Bobe, et al.. Isolation, in vitro culture and nucleic acid transfection of rainbow trout granulosa cells. 10. International Symposium on Reproductive Physiology of Fish, Center of Marine Sciences (CCMAR). PRT., May 2014, Olhão, Portugal. ⟨hal-02743824⟩
  • Julien Bobe. MicroARN et développement. 19. Journées du CHEC Collège des Histologistes, Embryologistes et Cytogénéticiens, Université de Rennes 1 (UR1). FRA., Mar 2014, Amiens, France. ⟨hal-02801214⟩
  • Anna Wargelius, T. Furmanek, Jérôme Montfort, Aurélie Le Cam, L. Kleppe, et al.. A comparison between egg transcriptomes of cod and salmon reveals species specific traits in eggs for each species. 10. International Symposium on Reproductive Physiology of Fish, Center of Marine Sciences (CCMAR). PRT., May 2014, Olhão, Portugal. ⟨hal-02744047⟩
  • Aurélien Bouleau, J.M. Traverso, T. Desvignes, Thuy Thao Vi Nguyen, Frank Chesnel, et al.. Maternally-inherited NPM2 mRNA is crucial for early developmental success in Zebrafish. 10. International Symposium on Reproductive Physiology of Fish, Center of Marine Sciences (CCMAR). PRT., May 2014, Olhão, Portugal. ⟨hal-02743781⟩
  • Elisa Marivin, Ayaka Yano, Pascal Bodinier, Adèle Guérin, Thuy Thao Vi Nguyen, et al.. Further characterization of rainbow trout shbgb during sexual differentiation. 10. International Symposium on Reproductive Physiology of Fish, Center of Marine Sciences (CCMAR). PRT., May 2014, Olhão, Portugal. ⟨hal-02743822⟩
  • Jérémy Pasquier, Cédric Cabau, P. Gouret, L. Journot, Christophe Klopp, et al.. Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication. Eel genome symposium 2014, Jan 2014, Leiden, Netherlands. ⟨hal-02743789⟩
  • Amélie Juanchich, Aurélie Le Cam, Jérôme Montfort, Yann Guiguen, Julien Bobe. Identification of differentially expressed miRNAs and their potential targets during fish oogenesis. 4. International Workshop on The Biology of Fish Gametes, Sep 2013, Albufeira, Portugal. 261 p. ⟨hal-02745190⟩
  • C. Fernández-Díez, S. González Rojo, Julien Bobe, Jérôme Montfort, Aurélie Le Cam, et al.. Sperm genome integrity and DNA repair in trout development: transcriptome analysis of the offspring. 4. International Workshop on The Biology of Fish Gametes, Sep 2013, Albufeira, Portugal. 261 p. ⟨hal-02746440⟩
  • Aurélien Bouleau, Thomas Desvignes, Thuy Thao Vi Nguyen, Franck Chesnel, Christian Fauvel, et al.. Contribution of oocyte-specific genes to developmental competence in fish oocytes. 4. International Workshop on The Biology of Fish Gametes, Sep 2013, Albufeira, Portugal. 261 p. ⟨hal-02747114⟩
  • Julien Bobe, Thomas Desvignes, Aurélien Bouleau, Juan Martin Traverso, Thuy Thao Vi Nguyen, et al.. Molecular mechanisms controlling egg quality. Aquaculture 2013, World Aquaculture Society (WAS). USA., Feb 2013, Nashville, Tennessee, United States. ⟨hal-02747121⟩
  • Julien Bobe, Svetlana Uzbekova, Pierre Pontarotti, Franck Chesnel. OSCILE - Oocyte-somatic cells interactions, lessons from evolution. 9. Journées AGENAE, Mar 2012, La Rochelle, France. ⟨hal-02747100⟩
  • Maella Gohin, Alexis Fostier, Frank Chesnel, Julien Bobe. Contribution of germinal compartment to ovarian estradiol synthesis. 7. International Symposium on Fish Endocrinology, Sep 2012, Buenos Aires, Argentina. ⟨hal-02747128⟩
  • Thomas Desvignes, Thuy Thao Vi Nguyen, Aurélien Bouleau, Juan Martin Traverso, Alexis Fostier, et al.. Mieux comprendre ce qui fait un oeuf de bonne qualité. 3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. ⟨hal-02744977⟩
  • Maella Gohin, Pascal Bodinier, Alexis Fostier, Julien Bobe, Frank Chesnel. Aromatase is expressed and active in growing oocytes of two non-mammalian vertebrates (Xenopus laevis and Oncorhynchus mykiss). 44. Annual Meeting of the Society for the Study of Reproduction (SSR), Jul 2011, Portland, Oregon, United States. ⟨hal-02747105⟩
  • Ayaka Yano, Barbara Nicol, Karina Valdivia, Amélie Juanchich, Thomas Desvignes, et al.. Sex in salmonids: from gonadal differentiation to genetic sex determination. 9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. pp.60-61. ⟨hal-01001171⟩
  • Guirec André, Benjamin Quittet, Pierrick Haffray, Julien Bobe. In vitro storage of rainbow trout eggs at low temperature. Aquaculture Europe 2011, Oct 2011, Rhodes, Greece. ⟨hal-02749144⟩
  • Thomas Desvignes, Chloé Fauvel, Alexis Fostier, Julien Bobe. Nme family and determination of egg quality, new insights from the zebrafish Danio rerio. 9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. ⟨hal-02746398⟩
  • Karina Valdivia, Christian Gillet, René Guyomard, Julien Bobe, Alexis Fostier, et al.. Potential deleterious effects of water warming on sex differentiation and oocytes production in salmonids. Aquaculture Europe 2011, European Aquaculture Society (EAS). BEL., Oct 2011, Rhodes, Greece. pp.355-356. ⟨hal-01000890⟩
  • Aurélie Le Cam, Julien Bobe, Olivier Bouchez, Cédric Cabeau, Olivier Kah, et al.. Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach. Animation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France. ⟨hal-02747070⟩
  • Julien Bobe, Juan Traverso. Post-genomic analysis of oocyte developmental competence in teleost fish. Aquaculture 2010, Mar 2010, San Diego, California, United States. ⟨hal-02753898⟩
  • Julien Bobe, Cathy Charlier. Transcriptomic analysis of the ovulatory process in rainbow trout. Aquaculture 2010, Mar 2010, San Diego, California, United States. ⟨hal-02753901⟩
  • Thomas Desvignes, Christian Fauvel, Julien Bobe. Nme gene family in the fish ovary. Aquaculture 2010, Mar 2010, San Diego, California, United States. ⟨hal-02758244⟩
  • Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe. The Nme family: gene repertoire and evolutionary history. 8. International Congress of the NDP Kinase/Nm23/awd Family - From basic science to clinical application, Oct 2010, Heidelberg, Germany. ⟨hal-02818522⟩
  • Thomas Desvignes, Christian Fauvel, Julien Bobe. Quelle implication des gènes Nme dans la qualité des oeufs de poissons?. Journées des doctorants de l'Ifremer, Oct 2010, Brest, France. ⟨hal-02822324⟩
  • H. Migaud, A. Davie, G. Bell, E. Cabrita, M.P. Herraez, et al.. Review on broodstock management and gamete quality in commercially important european species. Aquaculture Europe 2010, Aug 2010, Porto, Portugal. ⟨hal-02754607⟩
  • Cathy Charlier, Jérôme Montfort, Olivier Chabrol, Francois Moreews, M. Salhab, et al.. Oocyte-Somatic Cells Interactions, Lessons from Evolution. VIIIe Colloque Agenae / Genanimal, Nov 2010, Bordeaux, France. ⟨inria-00540830⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Hélène Jammes, Jean-Jacques Lareyre, et al.. Is the fish pou2 orthologue of pou5f1/Oct4 regulated by methylation during early embryo development in goldfish?. RNAI & miRNA Europe, Sep 2010, Dublin, Ireland. ⟨hal-02753933⟩
  • Maella Gohin, Julien Bobe, Frank Chesnel. Comparative genomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two lower vertebrates, Oncorhynchus mykiss and Xenopus laevis. Club amphibien 2009, Université de Rennes 1 (UR1). FRA., Jul 2009, Rennes, France. ⟨hal-02819712⟩
  • Julien Bobe, Elisabeth Sambroni, Sandrine Aegerter, Hélène Rime, Sylvain Milla, et al.. Biotechnologies de la qualité des gamètes : Optimisation des conditions d'obtention, de stockage et de manipulation des oeufs de truite arc-en-ciel (Oncorhynchus mykiss). 2. Journées de la Recherche Filière Piscicole, Jul 2009, Paris, France. ⟨hal-02751827⟩
  • Juan Traverso, Julien Bobe. The maternal contribution of oocyte-specific genes to embryo development in zebrafish: analysis by real-time PCR and knock-down using morpholino oligos. 42. Annual Meeting of the Society for the Study of Reproduction, Jul 2009, Pittsburg, Pennsylvania, United States. ⟨10.1093/biolreprod/81.s1.285⟩. ⟨hal-02754267⟩
  • Maella Gohin, Julien Bobe, Frank Chesnel. Comparative genomic analysis of follicle-enclosed oocyte maturational and developmental competence acquisition in two lower vertebrates, Oncorhynchus mykiss and Xenopus laevis. 42. Annual Meeting of the Society for the Study of Reproduction, Jul 2009, Pittsburg, Pennsylvania, United States. ⟨hal-02755876⟩
  • Julien Bobe, Christina Schultheis, Astrid Bohne, Delphine Galiana-Arnoux, Marie Semon, et al.. Differential duplication, inactivation, and loss of a gonad-specific gene on vertebrate sex chromosomes. 42. Annual Meeting of the Society for the Study of Reproduction, Jul 2009, Pittsburg, Pennsylvania, United States. ⟨hal-02756892⟩
  • Juan Martin Traverso, Thomas Desvignes, Maella Gohin, Sandrine Aegerter, Hélène Rime, et al.. Molecular mechanisms regulating fish egg quality. 2. International Workshop on Biology of Fish Gametes, Sep 2009, Valencia, Spain. pp.88-89. ⟨hal-02819781⟩
  • Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe. Nme protein family evolutionary history, a vertebrate perspective with emphasis on the teleost group. Evolutionary biology 2009: Phylogenetics, speciation, co-evolution, development, genomes, life histories, plasticity.. What is new ?, Jun 2009, Rennes, France. ⟨hal-02752933⟩
  • Julien Bobe. Obtaining top quality eggs. Reprofish Aquabreeding Workshop "The Future Prospects for Aquaculture Breeding in Europe", Oct 2008, Paris, France. ⟨hal-02812390⟩
  • Julien Bobe. Identification of egg quality indicators in rainbow trout. Aquaculture training workshop for the industry, Feb 2008, Paris, France. Présentation Power point. ⟨hal-02813859⟩
  • Julien Bobe, Thuy Thao Vi Nguyen, Bernard Jalabert, Alexis Fostier. Molecular events in the preovulatory ovary leading to the realease of a good quality oocyte. 6. International Symposium on Fish Endocrinology, Jun 2008, Calgary (Alberta), Canada. ⟨hal-02751924⟩
  • Maella Gohin, Juan Martin Traverso, Thuy Thao Vi Nguyen, Franck Chesnel, Bernard Jalabert, et al.. The molecular basis of oocyte competence in fish. Sex determination and gametogenesis in fish: Current status and future directions, May 2008, Honolulu (Hawaï), United States. ⟨hal-02754618⟩
  • Maella Gohin, Julien Bobe, Franck Chesnel, Béatrice Collin, Thuy Thao Vi Nguyen. Acquisition de la compétence ovocytaire au développement chez deux vertébrés inférieurs. Journée des Doctorants en Biologie Animale du Centre INRA de Rennes, Jun 2008, Rennes, France. ⟨hal-02754662⟩
  • Gilles Monod, Daniel Baron, Julien Bobe, Alexis Fostier, Yann Guiguen, et al.. Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel. Colloque de restitution du Programme National d'Ecotoxicologie. PNETOX, Ministère de l'Ecologie, de l'Energie, du Développement durable et de l'Aménagement du Territoire. FRA., Oct 2008, Lille, France. ⟨hal-02756581⟩
  • Jean-Jacques Lareyre, Marie-José Ricordel, Sophie Mahé, Anne-Sophie Goupil, Denise Vizziano, et al.. Deux nouveaux membres de la superfamille des tgfβ sont exprimés très préférentiellement dans la gonade mâle de truite et sont différentiellement exprimés au cours de la différenciation sexuelle et la spermatogenèse. 2. Journées d'Animation Scientifique du Département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Oct 2007, Tours, France. ⟨hal-02756027⟩
  • Jean-Jacques Lareyre, Julien Bobe, Yann Guiguen, Florence Le Gac, Alexis Fostier. Funtional genomics approaches in the study of reproduction in finfish aquaculture. Mini Symposium "State-of-the-art and future of genomics in aquaculture research", Sep 2007, Bergen, Norway. ⟨hal-02812037⟩
  • Alexis Fostier, Julien Bobe. Une méthode complète de caractérisation de la qualité des ovules de truite arc-en-ciel : application à différentes conditions d'élevage. 1. Journées de la recherche filière piscicole, Jul 2007, Paris, France. ⟨hal-02750742⟩
  • Julien Bobe. Large-scale gene expression analyses to assess reproductive success: molecular analysis of egg quality in rainbow trout. Six Decades of Fishery Genetics: a retrospective view and a vision for the future, Sep 2007, Seattle, United States. ⟨hal-02751007⟩
  • Julien Bobe, Sophie Mahé, Thuy Thao Vi Nguyen, Hélène Rime, Denise Vizziano, et al.. Identification of a novel Sex Hormone Binding Globulin (SHBG) in the rainbow trout (Oncorhynchus mykiss) ovary. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. ⟨hal-02757295⟩
  • Nathalie Chenais, Sophie Mahé, Xavier Vignon, Alexandra Depince, Julien Bobe, et al.. Optimisation des conditions de manipulation des ovules en vue du transfert nucléaire chez le carassin. 1. Journées de la Recherche Filière Piscicole, Jul 2007, Paris, France. ⟨hal-02755534⟩
  • D. Crespo, N. Roher, S. Mackenzie, Julien Bobe, J.V. Planas. Análisis del efecto de TNFalpha recombinante de trucha (rtTNFalpha) sobre la esteroidogénesis ovárica en trucha (Salmo trutta). 11. Congreso Nacional de Acuicultura, Sep 2007, Vigo, España. 4 p. ⟨hal-02820829⟩
  • Julien Bobe, Alexis Fostier. Qualité des oeufs chez la truite : contexte et résultats. Séminaire AGENAE 2006, Mar 2006, Poitiers, France. ⟨hal-02750808⟩
  • Alexis Fostier, Julien Bobe. Exploration de la qualité des ovules de truite arc-en-ciel (Oncorhynchus mykiss) : mise en place d'une méthodologie appliquée à trois conditions d'élevage. RIF 2006, Mar 2006, Paris, France. ⟨hal-02751633⟩
  • Julien Bobe. Gènes ovocytaires en liaison avec la compétence à la maturation ovocytaire et au développement. Journée IFR140 GFAS "Gamétogenèse", Apr 2006, Rennes, France. ⟨hal-02812796⟩
  • Paul Erwan Mauger, Julien Bobe, Catherine Labbé, Pierre-Yves Le Bail. Caractérisation des cellules issues de culture d'explants de nageoire de carassin en vue du transfert nucléaire : quelle stabilité du type cellulaire épithélial ?. RIF 2006, Mar 2006, Paris, France. ⟨hal-02753830⟩
  • Alexis Fostier, Julien Bobe. Effect of photoperiod manipulation on rainbow trout (Oncorhynchus mykiss) egg quality: a genomic study. 4. Fish and shellfish larviculture symposium, Sep 2005, Gent, Belgium. ⟨hal-02760440⟩
  • Julien Bobe. Aromatase et maturation ovocytaire. Journée IFR140 GFAS "Oestrogènes et reproduction", Nov 2005, Rennes, France. ⟨hal-02826247⟩
  • Julien Bobe. La qualité des oeufs chez la truite arc-en-ciel : analyse du stock d'ARN d'origine maternelle dans l'ovocyte en fonction de la qualité des pontes. Séminaire AGENAE 2005, Mar 2005, Saint Malo, France. ⟨hal-02826915⟩
  • Gilles Monod, Daniel Baron, Julien Bobe, Alexis Fostier, Yann Guiguen, et al.. Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel. Colloque PNETOX, Nov 2005, Paris, France. ⟨hal-02763366⟩
  • Alexis Fostier, Julien Bobe. Transcriptomic analysis of egg quality: identification of oocyte gene clusters associated with embryonic failure. Sino-French Workshop on Fish Biology and Diseases, Nov 2004, Wuhan, China. ⟨hal-02759531⟩
  • Alexis Fostier, Julien Bobe. Egg quality in rainbow trout (Oncorhynchus mykiss): A genome-wide study of oocyte transcriptome using CDNA microarrays. 5. International Symposium on Fish Endocrinology, Sep 2004, Castellón, Spain. ⟨hal-02761155⟩
  • Sandrine Aegerter, Alexis Fostier, Bernard Jalabert, Julien Bobe. La qualité des oeufs chez la truite arc-en-ciel : analyse du stock d'ARN d'origine maternelle dans l'ovocyte en fonction de la qualité des pontes. Journées AGENAE, Mar 2004, Montpellier, France. ⟨hal-02825028⟩
  • Julien Bobe. L'oeuf de poisson, de la biologie au caviar. Cycle de Conférences autour de la Gastronomie Moléculaire, Dec 2004, Neufchâtel, Suisse. ⟨hal-02825861⟩
  • Julien Bobe. Follicular maturational competence acquisition and oocyte developmental competence in rainbow trout: targeted and large-scale genomic approaches. Marine Genomic Workshop, Sep 2004, Castellon, Spain. ⟨hal-02827013⟩
  • N. Melaine, Audrey Jumel, Julien Bobe, Florence Le Gac. Transfert méthodologique des outils de génomique dédiés à la truite vers d'autres espèces d'intérêt aquacole. Journée du Syndicat Français de l'Aquaculture Marine (SFAM), Mar 2004, Montpellier, France. ⟨hal-02828119⟩
  • Julien Bobe. The oocyte transcriptome as a reflection of egg quality. 5. International Symposium on Fish Endocrinology, Sep 2004, Castellon, Spain. ⟨hal-02831293⟩
  • Hélène Rime, Julien Bobe, Bernard Jalabert, Gilles Monod. Effet agoniste de pesticides sur la maturation ovocytaire de la truite arc-en-ciel. Journée IFR140 GFAS "Perturbateurs endocriniens de la reproduction", Dec 2004, Rennes, France. ⟨hal-02825394⟩
  • Sandrine Aegerter, Daniel Baron, C. Carpentier, François Chauvigné, Christelle Dantec, et al.. The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology research. Experimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom. ⟨hal-02761230⟩
  • Julien Bobe, Thuy Thao Vi Nguyen, Bernard Jalabert. The paracrine control of maturational competence acquisition and oocyte maturation: A large scale real-time PCR study in the rainbow trout preovulatory ovary. 5. International Symposium on Fish Endocrinology, Sep 2004, Castellón, Spain. ⟨hal-02763715⟩
  • Sandrine Aegerter, Julien Bobe, Bernard Jalabert. La qualité des oeufs de poissons : recherche de marqueurs et influence du vieillissement ovocytaire post-ovulatoire. RIF 2003, Mar 2003, Paris, France. ⟨hal-02762564⟩
  • Gilles Monod, Hélène Rime, Julien Bobe, Bernard Jalabert. Agonistic effect of imidazole and triazole fungicides on in vitro oocyte maturation in rainbow trout (Oncorhynchus mykiss). 12. International Symposium Pollutant Responses in Marine Organisms. PRIMO 12, May 2003, Tampa (Floride), United States. pp.33. ⟨hal-02832141⟩
  • Julien Bobe, Frederick William Goetz. Identification of a decoy tumor necrosis factor (TNF) receptor in the brook trout ovary and its regulation at ovulation. 4. International Symposium on Fish Endocrinology, University of Washington [Seattle]. USA., Jul 2000, Seattle, United States. ⟨hal-02770480⟩

Poster communications53 documents

  • Emilie Cardona, Jérôme Montfort, Hugues Parrinello, Laurent Journot, Julien Bobe, et al.. Micro ARNs circulants dans le plasma et le fluide ovarien comme potentiels biomarqueurs non invasifs de la nutrition et de la reproduction de la truite arc-en-ciel (Oncorhynchus mykiss). Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés. ⟨hal-02735025⟩
  • Aurélie Guého, Hélène Rime, Emmanuelle Com, Régis Lavigne, Blandine Guevel, et al.. Functional and proteomic characterisation of salmonid coelomic fluid. Aquaculture Europe 2019, Oct 2019, Berlin, Germany. 2019, Our future: growing from water. ⟨hal-02284509⟩
  • Emilien Segret, Frédéric Cachelou, Emilie Cardona, Jérôme Bugeon, Sandrine Skiba-Cassy, et al.. Unusual egg quality phenotype in the Aspe Valley: a case study in rainbow trout. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.160-161, 2019. ⟨hal-02282255⟩
  • Swapnil Gorakh Waghmare, Azin Mohagheghi Samarin, Azadeh Mohagheghi Samarin, Thuy Thao Vi Nguyen, Roman Franek, et al.. Changes in mRNA abundance of selected transcripts during oocyte ageing in zebrafish danio rerio. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.148-148, 2019. ⟨hal-02282253⟩
  • Thuy Thao Vi Nguyen, Amaury Herpin, Julien Bobe. topaz1, a crucial gene for medaka (Oryzias latipes) reproduction. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. 178 p., 2019. ⟨hal-02282327⟩
  • Manon Thomas, Stéphanie Gay, Jérôme Bugeon, Marie Haghebaert, Fabrice Mahé, et al.. Développement d'une nouvelle méthode pour l'analyse 3D de la dynamique ovarienne chez le poisson : Transparisation, microscopie, analyse d'image et modélisation. Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés. ⟨hal-02735123⟩
  • Stéphanie Gay, Jérôme Montfort, Fabrice Legeai, Thuy Thao Vi Nguyen, Thomas Desvignes, et al.. Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.153-153, 2019. ⟨hal-02282325⟩
  • Mariana Roza de Abreu, Manon Lesage, Stéphanie Gay, Thuy Thao Vi Nguyen, Cécile Duret, et al.. Characterization of micropyle formation in medaka (Oryzias latipes) miR-202 -/- mutants. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.155-156, 2019. ⟨hal-02282254⟩
  • Aurélie Guého, Hélène Rime, Emmanuelle Com, Régis Lavigne, Blandine Guevel, et al.. Functional and proteomic characterisation of salmonid coelomic fluid. 7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.59-59, 2019. ⟨hal-02282309⟩
  • Violaine Colson, Claudiane Valotaire, Julien Bobe, Sandrine Skiba-Cassy, Emilie Cardona. Conséquences de l’alimentation maternelle sur le développement comportemental des alevins de truite arc-en-ciel. 6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. 2019. ⟨hal-02184248⟩
  • Aurélie Guého, Hélène Rime, Emmanuelle Com, R. Lavigne, B. Guével, et al.. Caractérisation protéomique du liquide coelomique de salmonidés. Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés. ⟨hal-02735565⟩
  • Laura Frohn, Stéphane Panserat, Emilie Cardona, Laurence Larroquet, Geneviève Corraze, et al.. Alimentation végétale supplémentée en DHA d'origine micro-algale au cours du cycle de reproduction de la truite arc-en-ciel : conséquences métaboliques chez les descendants. 6. Journées de la Recherche Filière Piscicole, Jul 2019, Paris, France. 2019. ⟨hal-02179542⟩
  • Emilie Cardona, François Guivarc'H, Stéphane Panserat, Geneviève Corraze, Julien Bobe, et al.. Effect of food restriction on reproductive performances and egg quality in rainbow trout (Oncorhynchus mykiss). 18. ISFNF International Symposium on Fish Nutrition and Feeding "40 years of research in fish nutrition", Jun 2018, Las Palmas de Gran Canaria, Spain. 2018, Libro de abstracts. ⟨hal-01831460⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, Laure Henry, Jérôme Montfort, et al.. miR-202, un microARN clé pour le succès reproducteur des femelles chez le poisson médaka. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés. ⟨hal-01771815⟩
  • Thuy Thao Vi Nguyen, Amaury Herpin, Julien Bobe. Topaz1, un gène crucial pour la reproduction chez le poisson medaka. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés. ⟨hal-01774747⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, L. Henry, C. Delahaye, et al.. MiR-202 regulates female fecundity by controlling early follicle development in medaka ovary. 11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment. ⟨hal-02437626⟩
  • Laury, Priscilla, Marjolène Lescat, Amaury Herpin, Brigitte Mourot, Vincent Veron, Yann Guiguen, et al.. Lamp2A à la lumière de l'évolution. Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés. ⟨hal-01771816⟩
  • Emilie Cardona, Jérôme Bugeon, Violette Thermes, Violaine Colson, Sandrine Skiba, et al.. Effect of food restriction on reproductive performances and egg quality in the trout Oncorhynchus mykiss. 6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes. ⟨hal-01595634⟩
  • Taina Rocha de Almeida, Bérénice Schaerlinger, Aurélie Le Cam, Alix Maud, Jérôme Montfort, et al.. Transcriptomic analysis of Eurasian Perch (Perca fluviatilis) eggs assigned to various groups of qualities according to a statistically based analysis. 7. Fish and Shellfish Larviculture Symposium, Sep 2017, Ghent, Belgium. 2017. ⟨hal-02935650⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Jérôme Montfort, Julien Bobe. Novel maternal-effect genes shed new light on the molecular mechanisms controlling fish egg quality. 6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes. ⟨hal-01579294⟩
  • Danielle Zanerato Damasceno, Morgane Cousture, Claudiane Valotaire, Aurélie Le Cam, Thuy Thao Vi Nguyen, et al.. Impact of maternal exposure to high temperature on egg quality and subsequent offspring behavior. 6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes. ⟨hal-01595661⟩
  • Amine Bouchareb, Stéphanie Gay, Julien Bobe, Violette Thermes. Inactivation of miR202 after targeting its 3' genomic region using the CRISPR/Cas9 technology. 10. Meeting SifrARN, Mar 2016, Toulouse, France. 2016, SifrARN 2016. ⟨hal-02742891⟩
  • Amine Bouchareb, Aurélie Le Cam, Jérôme Montfort, Stéphanie Gay, Thuy Thao Vi Nguyen, et al.. Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes). 10. Meeting SifrARN, Mar 2016, Toulouse, France. 2016, SifrARN 2016. ⟨hal-02742939⟩
  • Amélie Juanchich, Stéphanie Gay, Amine Bouchareb, Jean-Charles Gabillard, Yann Guiguen, et al.. Analyse expressionnelle et fonctionnelle des microRNAs dans la physiologie du poisson (MicroFish). Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. 115 p., 2016, Crédits incitatifs financés entre 2011 et 2014. ⟨hal-02741924⟩
  • Amine Bouchareb, Aurélie Le Cam, Jérôme Montfort, Stéphanie Gay, Thuy Thao Vi Nguyen, et al.. Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes). 49. Annual Meeting of the Society for the Study of Reproduction, Jul 2016, San Diego, California, United States. 405 p., 2016, SSR 2016 Systems Biology of Reproduction. ⟨hal-02742929⟩
  • Jérôme Bugeon, Jérôme Doerflinger, Chloé Bertin, Vincent Petit, Florian Enez, et al.. VISEGG : un système de comptage et mesure automatisé des oeufs de truite par analyse d'image. 5. Journées de la Recherche Filière Piscicole, Jul 2016, Paris, France. Journées de la Recherche Filière Piscicole, pp.45, 2016, JRFP 2016. ⟨hal-02743289⟩
  • Florian Enez, Jérôme Doerflinger, Anne-Sophie Tyran, Anastasia Bestin, Vincent Petit, et al.. Best-Ov : Evaluation des paramètres génétiques des caractères de ponte chez la truite arc-en-ciel. 5. Journées de la Recherche Filière Piscicole, Jul 2016, Paris, France. Journées de la Recherche Filière Piscicole, pp.52, 2016, JRFP 2016. ⟨hal-02743655⟩
  • Julien Bobe, Ingo Braasch, Jérémy Pasquier, Christophe Klopp, Hughes Parrinnello, et al.. Evolution des gènes et des génomes dans une démarche de soutien à la diversification d’espèces aquacoles. Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. 2016, Crédits incitatifs financés entre 2011 et 2014. ⟨hal-02740982⟩
  • Jérémy Pasquier, Elisa Marivin, Alexis Fostier, Yann Guiguen, Julien Bobe. Revisiting the Shbg genes evolution across vertebrates supports a much earlier origin than previously hypothesized. 27. Conference of European Comparative Endocrinologists, Aug 2014, Rennes, France. 2014, CECE 2014. ⟨hal-02743825⟩
  • Benjamin Geffroy, Agnes Bardonnet, Alexis Fostier, Julien Bobe, Yann Guiguen. Expression profiles for six sex-specific genes during gonadal development in eels. Eel genome symposium 2014, Jan 2014, Leiden, Netherlands. 2014, New perspectives in evolution, reproduction and ecology. ⟨hal-02743746⟩
  • Jérémy Pasquier, Cédric Cabau, P. Gouret, L. Journot, Christophe Klopp, et al.. The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts. 17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles. ⟨hal-02745585⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Jean-Jacques Lareyre, Pierre-Yves Le Bail. c-myc: evolutionary history in teleosts and duplicated c-myca genes characterization in goldfish. 4. Journées d'Animation Scientifique du département Phase (JAS Phase 2012), Jan 2012, Rennes, France. 2012. ⟨hal-02806162⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Pierre-Yves Le Bail. Histoire phylogénétique de c-myc chez les téléostéens et caractérisation de la duplication de c-myca chez l'embryon de poisson rouge. 5. Rencontres de l'Ichtyologie en France, Mar 2012, Paris, France. 2012, Ve Rencontres de l'Ichtyologie en France. RIF 2012. ⟨hal-02745043⟩
  • Julien Bobe, M. Westerfield, Pierre Pontarotti, Christophe Klopp, Laurent Journot, et al.. Gene annotation with evolutionary support in teleosts with a focus on the salmonid lineage. 1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012. ⟨hal-02746168⟩
  • Guirec André, B. Quittet, Pierrick Haffray, Julien Bobe. Conservation in vitro à basse température d'oeufs de truite arc-en-ciel non fécondés. 3. Journées de la Recherche Filière Piscicole, Jul 2012, Paris, France. 2012, 3èmes Journées de la Recherche Filière Piscicole. ⟨hal-02745673⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Jean-Jacques Lareyre, Pierre-Yves Le Bail. Expression and promoter methylation pattern of three major developmental genes, sox2, nanog, and c-myc, during early embryo development in goldfish. 44. Annual Meeting of the Society for the Study of Reproduction (SSR), Jul 2011, Portland, Oregon, United States. Society for the Study of Reproduction, Biology of Reproduction, 85, 2011, Reproduction and the World's Future. ⟨hal-02746166⟩
  • Lucie Marandel, Catherine Labbé, Julien Bobe, Pierre-Yves Le Bail. nanog promoter sequence, DNA methylation, and expression in gametes and early embryo reveal striking differences between teleosts and mammals. 34. SBCF meeting "Cell cycle cancer and development", May 2011, Saint-Malo, France. 2011. ⟨hal-02806345⟩
  • Amélie Juanchich, Christophe Klopp, Yann Guiguen, Julien Bobe. MicroRNAs expression during fish oogenesis and sex differentiation. 9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish. ⟨hal-02746432⟩
  • Daphné Brisard, Franck Chesnel, Cathy Charlier, Jérôme Montfort, Joëlle Dupont, et al.. Gene expression in bovine and mouse cumulus cells in relation with oocyte maturation. 4. COST Action FA0702 GEMINI General Conference - Maternal Interactions with Gametes and Embryos, Sep 2011, Gijon, Spain. 2011. ⟨hal-02745042⟩
  • Thomas Desvignes, Pierre Pontarotti, Christian Fauvel, Julien Bobe. Histoire évolutive des gènes de la famille Nme chez les vertébrés et implication dans la compétence ovocytaire au développement chez les poissons. Journées des doctorants de l'Ifremer, Oct 2010, Brest, France. 2010. ⟨hal-02822027⟩
  • Astrid Boehne, Christina Schultheis, Delphine Galiana-Arnoux, Frederic Brunet, Karim Madani, et al.. Sexy evolution: a new type of vertebrate sex-determining gene candidate on the Y chromosome of the platyfish. SMBE08. Annual Meeting of the Society for Molecular Biology and Evolution, Jun 2008, Barcelone, Spain. 2008. ⟨hal-02758460⟩
  • Soazik Jamin, Denise Vizziano, Gwenaëlle Randuineau, Julien Bobe, Jean-Jacques Lareyre, et al.. Rainbow trout anti-Müllerian hormone gene (amh) structure and expression. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-rendus / Proceedings "8th International Symposium on Reproductive Physiology of Fish (ISRPF). ⟨hal-02754132⟩
  • Jean-Jacques Lareyre, Marie-José Ricordel, Sophie Mahé, Anne-Sophie Goupil, Denise Vizziano, et al.. Two new TGF beta members are restricted to the gonad and differentially expressed during sex differentiation and gametogenesis in trout. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-Rendus / Proceedings “8th International Symposium on Reproductive Physiology of Fish (ISRPF)”. ⟨hal-02756495⟩
  • Bernard Jalabert, Alexis Fostier, Julien Bobe. Fish egg quality and oocyte transcriptome. A new approach using cDNAs microarrays on oocytes after two ovulation perturbations. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-Rendus / Proceedings “8th International Symposium on Reproductive Physiology of Fish (ISRPF)”. ⟨hal-02752236⟩
  • Julien Bobe, Sophie Mahé, Thuy Thao Vi Nguyen, Hélène Rime, Denise Vizziano, et al.. Identification à l'aide de puces à ADN d'une nouvelle forme de sex hormone-binding globulin temporellement co-exprimée avec l'aromatase dans l'ovaire des salmonidés. 2. Journées d'Animation Scientifique du Département PHASE, Oct 2007, Tours, France. 2007. ⟨hal-02752891⟩
  • Nathalie Chenais, Sophie Mahé, Xavier Vignon, Alexandra Depince, Julien Bobe, et al.. A preliminary approach for nuclear transfer in goldfish: reduction in the variability of egg quality, optimization of egg manipulation. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN - Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-rendus / Proceedings "8th International Symposium on Reproductive Physiology of Fish (ISRPF)". ⟨hal-02756037⟩
  • Frederic Goetz, Julien Bobe, Dimitar Iliev, Josep Planas, Barbara Castellana, et al.. Characterization of rainbow trout IL-6 and possible relationship with reproductive function. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-Rendus / Proceedings “8th International Symposium on Reproductive Physiology of Fish (ISRPF)”. ⟨hal-02755492⟩
  • Diego Crespo, Nerea Roher, Simon Mackenzie, Frederick W. Goetz, Julien Bobe, et al.. Reproductive consequences of an immune challenge during the preovulatory period in trout: possible mediatory role of tumor necrosis factor alpha. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-Rendus / Proceedings “8th International Symposium on Reproductive Physiology of Fish (ISRPF) ”. ⟨hal-02755481⟩
  • Amilie Crespel, Hélène Rime, Erwann Fraboulet, Julien Bobe, Christian Fauvel. Egg quality in domesticated and wild seabass (Dicentrarchus labrax): A proteomic analysis. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. MNHN Museum National d'Histoire Naturelle, Cybium, 32 (S2), 2008, Comptes-Rendus / Proceedings “8th International Symposium on Reproductive Physiology of Fish (ISRPF)”. ⟨hal-02756596⟩
  • Gilles Monod, Julien Bobe, Yann Guiguen, Florence Le Gac. Approche intégrative des effets des perturbateurs endocriniens de la reproduction chez le poisson. 1. Journées d’Animation Scientifique du Département de Physiologie Animale et Systèmes d'Elevage, Mar 2005, Tours, France. 2005, 1ères Journées d'Animation Scientifique du Département de Physiologie Animale et Systèmes d'Elevage. ⟨hal-02760554⟩
  • Daniel Baron, Julien Bobe, Peter Fiegehen, Alexis Fostier, Yann Guiguen, et al.. Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel. Colloque de restitution PNETOX "Apport de la recherche à la gestion des milieux", Mar 2004, Lyon, France. 2004. ⟨hal-02829629⟩
  • Julien Bobe, - Maugars Gersende, Bernard Jalabert. Specific gene expression profiles are associated with follicular maturational competence acquisition in rainbow trout (Oncorhynchus mykiss). 7. International Symposium on Reproductive Physiology of Fish, May 2003, Mie, Japan. 2003, 7th International Symposium on Reproductive Physiology of Fish. Program and abstracts. ⟨hal-02759169⟩
  • - Aegerter Sandrine, Bernard Jalabert, Julien Bobe. Maternal mRNA stockpile and oocyte developmental competence in rainbow trout (Oncorhynchus mykiss). 7. International Symposium on Reproductive Physiology of Fish, May 2003, Mie, Japan. Aquaculture, 2003, 7th International Symposium on Reproductive Physiology of Fish. Program and abstracts. ⟨hal-02759826⟩

Book sections11 documents

  • Caroline Cheung, Julien Bobe, Violette Thermes. Maternal RNAs, fish and amphibians. Encyclopedia of Reproduction, Volume 6: Comparative Reproduction (2ème ed.), Elsevier, Academic Press, 2018, 978-0-12-815145-7. ⟨10.1016/B978-0-12-809633-8.20566-9⟩. ⟨hal-02791192⟩
  • Julien Bobe, Lucie Marandel, Stéphane Panserat, Pierre Boudinot, Camille Berthelot, et al.. The rainbow trout genome, an important landmark for aquaculture and genome evolution. Genomics in Aquaculture, Academic Press, 2016, 978-0-12-801418-9. ⟨10.1016/B978-0-12-801418-9.00002-0⟩. ⟨hal-01595642⟩
  • Julien Bobe, Alexis Fostier, Yann Guiguen, Jean-Jacques Lareyre, Florence Le Gac. La reproduction des poissons. La reproduction animale et humaine, Editions Quae, 751 p., 2014, Collection Synthèses, 978-2-7592-2208-7. ⟨hal-01205108⟩
  • Philippe Monget, Julien Bobe, Jean-Louis Couderc, Sylvie Dufour, Michel Guillomot, et al.. Evolution et reproduction. La Reproduction animale et humaine, Editions Quae, 751 p., 2014, Collection Synthèses, 978-2-7592-2208-7. ⟨hal-01205107⟩
  • Juan Martin Traverso, Alexis Fostier, Julien Bobe. Egg transcriptome, the maternal legacy of the embryo. Aquaculture biotechnology, John Wiley and Sons, 2012, 978-0-8138-1028-7. ⟨10.1002/9780470963159.ch11⟩. ⟨hal-01205053⟩
  • Julien Bobe, Carine Genet, Yann Guiguen. La génomique. La truite arc-en-ciel. De la biologie à l'élevage, Editions Quae, 2010, Synthèses, 978-2-7592-0875-3. ⟨hal-01193602⟩
  • Julien Bobe, Bernard Breton, Alexis Fostier, Yann Guiguen, Bernard Jalabert, et al.. Sexualité et reproduction. La truite arc-en-ciel. De la biologie à l'élevage, Editions Quae, 2010, Synthèses, 978-2-7592-0875-3. ⟨hal-01193565⟩
  • Julien Bobe, Catherine Labbé. Chilled storage of sperm and eggs. Methods in reproductive aquaculture: marine and freshwater species, CRC Press, 2009, 978-0-8493-8053-2. ⟨hal-02820315⟩
  • Julien Bobe, Bernard Jalabert, Alexis Fostier. Oogenesis: Post-vitellogenic events leading to a fertilizable oocyte. Fish reproduction, Science Publishers, 2008, 978-1-57808-331-2. ⟨hal-02821358⟩
  • Gilles Monod, Daniel Baron, Julien Bobe, Alexis Fostier, Yann Guiguen, et al.. Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel. Programme national d'écotoxicologie : point sur les recherches en cours 2001-2005, Documentation française, 2008, Environnement en Débat, 978-2-11-006669-5. ⟨hal-02824584⟩
  • J. Cerda, T. Maes, Julien Bobe, Patrick Babin, A. Admon, et al.. Aplicación de la genómica funcional y proteómica en el estudio de la reproducción y calidad de los gametos de teleósteos. Genética y genómica en acuicultura, Observatorio Espanol de Acuicultura, 2007, 978-84-00-08553-7. ⟨hal-02822700⟩

Directions of work or proceedings1 document

  • Guylène Roudaut, Catherine Labbé, Julien Bobe. 8th International Symposium on Reproductive Physiology of Fish ; June 3-8, 2007 - Saint-Malo (France). Abstract Book. 8. International Symposium on Reproductive Physiology of Fish, Jun 2007, Saint-Malo, France. 325 p., 2007. ⟨hal-02813816⟩

Other publications2 documents

  • Chloé Bertin, Julien Bobe, Frédéric Borel, Adèle Branthonne, Jérôme Bugeon, et al.. Petit poisson deviendra grand. 2016. ⟨hal-03141216⟩
  • Pierrick Haffray, Julien Bobe. Aquaculture : quels enjeux ? Au labo avant la mise à l'eau. 2016, pp.14. ⟨hal-02633962⟩

Preprints, Working Papers, ...10 documents

  • Emilie Cardona, Jérôme Bugeon, Emilien Segret, Julien Bobe. VisEgg: A robust phenotyping tool to assess rainbow trout egg features and viability. 2020. ⟨hal-03048531⟩
  • Caroline Cheung, Jérémy Pasquier, Aurélien Bouleau, Thuy Thao Vi Nguyen, Franck Chesnel, et al.. Double maternal effect: duplicated nucleoplasmin 2 genes, npm2a and npm2b, are shared by fish and tetrapods, and have distinct and essential roles in early embryogenesis. 2020. ⟨hal-01608935⟩
  • Manon Lesage, Manon Thomas, Jérôme Bugeon, Adèle Branthonne, Stéphanie Gay, et al.. C-Eci: A Cubic-Eci combined clearing method for 3D follicular content analysis In the ovary. 2020. ⟨hal-02790859⟩
  • Yann Guiguen, Jeremy Pasquier, Alexis Fostier, Julien Bobe. Evolution of sex hormone binding globulins reveals early gene duplication at the root of vertebrates. 2020. ⟨hal-03048977⟩
  • Qiaowei Pan, Romain Feron, Ayaka Yano, Rene Guyomard, Elodie Jouanno, et al.. Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation. 2019. ⟨hal-02791042⟩
  • Caroline Cheung, Thuy Thao Vi Nguyen, Aurélie Le Cam, Amélie Patinote, Laurent Journot, et al.. Lost in translation: egg transcriptome reveals molecular signature to predict developmental success and novel maternal-effect genes. 2018. ⟨hal-03169273⟩
  • Ozlem Yilmaz, Amélie Patinote, Thuy Thao Vi Nguyen, Emmanuelle Com, Charles Pineau, et al.. Genome editing reveals reproductive and developmental dependencies on specific types of 2 vitellogenin in zebrafish (Danio rerio). 2018. ⟨hal-02791030⟩
  • Caroline Cheung, Amélie Patinote, Yann Guiguen, Julien Bobe. foxr1 is a novel maternal-effect gene in fish that regulates embryonic cell growth via p21 and rictor. 2018. ⟨hal-02790845⟩
  • Stéphanie Gay, Jérôme Bugeon, Amine Bouchareb, Laure Henry, Jérôme Montfort, et al.. MicroRNA-202 (miR-202) controls female fecundity by regulating medaka oogenesis. 2018. ⟨hal-02790703⟩
  • Jérémy Pasquier, Ingo Braasch, Peter Batzel, Cédric Cabau, Jérôme Montfort, et al.. Evolution of gene expression after whole-genome duplication: new insights from the spotted gar genome. 2017. ⟨hal-02791027⟩

Reports7 documents

  • Julien Bobe. Portait moléculaire d’un oeuf de poisson de bonne qualité - Maternal Legacy. ANR-13-BSV7-0015, INRA LPGP Laboratoire de Physiologie et Génomique des Poissons; CNRS MGX BioCampus Montpellier (Montpellier GenomiX); INRA BIA SIGENAE Institut National de la recherche Agronomique; URAFPA Université de Lorraine-Unité de Recherche Animal et Fonctionnalité des Produits Animaux; IFREMER Institut Français de Recherche pour l'exploitation de la Mer - Centre Méditerranée. 2018, 13 p. ⟨hal-03139647⟩
  • Marie Laure Begout, Salima Aroua, Julien Bobe, Thibaut Larcher, Laurence Besseau. Devenir et effets de polluants organiques persistants (PCB, PBDE) sur la reproduction des poissons, le développement et la survie de la descendance - Fish'N'POPs. [Contrat] ANR 13-CESA-020 Fish'N'POPs, auto-saisine. 2017. ⟨hal-01605259⟩
  • Julien Bobe. Proteomic profiling and knock-out analysis o key components of the Zebrafish egg: discovering vitellogenin contributions to fish egg quality. Grant agreement ID: 626272, INRA Institut National de la Recherche Agronomique. 2017, 12 p. ⟨hal-03140006⟩
  • Julien Bobe, Yann Guiguen, John H. Postlethwait, Laurent Journot, Christophe Klopp, et al.. Analyse phylogénomique des duplications géniques chez les poissons téléostéens : une approche PAR RNASeq. [Rapport de recherche] ANR-10-GENM-017, University of Oregon; Centre National de la Recherche Scientifique (CNRS); Aix Marseille Université (AMU); INRA SCRIBE Station Commune de Recherche en Ichtyophysiologie. Biodiversité et Environnement. 2015. ⟨hal-02801550⟩
  • Julien Bobe, Svetlana Uzbekova, Pierre Pontarotti, Franck Chesnel. Oocyte-somatic cells interaction, lessons from evolution - Oscile. [Rapport de recherche] ANR-08-GENM-033, INRA. 2013. ⟨hal-02808395⟩
  • Julien Bobe, Christian Fauvel, Pascal Fontaine. AQUIDO. Analyse de la qualité des ovocytes inter-espèces et domestication. [Rapport de recherche] -. 2007. ⟨hal-02820299⟩
  • Gilles Monod, Daniel Baron, Julien Bobe, Alexis Fostier, Yann Guiguen, et al.. Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel. PNETOX II APR 2001, 2005. ⟨hal-02833754⟩

Theses1 document

  • Julien Bobe. Etude de l'expression des gènes impliqués dans les fonctions ovariennes en période post-ovulatoire chez les salmonidés.. Sciences du Vivant [q-bio]. Université de Rennes 1, 2001. Français. ⟨tel-02831837⟩

Habilitation à diriger des recherches1 document

  • Julien Bobe. Génomique de l'acquisition de la compétence ovocytaire au développement chez les poissons téléostéens. Sciences du Vivant [q-bio]. Université de Rennes 1, 2009. ⟨tel-02819763⟩

Software1 document

  • Cédric Cabau, Frédéric Escudié, Anis Djari, Yann Guiguen, Julien Bobe, et al.. DRAP: de novo RNA-Seq Assembly Pipeline. 2017. ⟨hal-02789567⟩