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Julien Bobe

61
Documents
Affiliations actuelles
  • 1002344
Identifiants chercheurs

Présentation

**Current position**. Research Director (DR1) and director of the Fish Physiology and Genomics laboratory. **Employment history** \- - Ph.D. University of Rennes I (April 2001). \- - Habilitation à Diriger les Recherches, University of Rennes I (March 2009). \- - Visiting research student in Pr. FW Goetz Laboratory. 1998-2000 (Univ. Notre Dame, USA). \- - INRAE Research Scientist. 2001-2009 (SCRIBE Laboratory). \- - INRAE Research Director and group leader. 2010-2015 (Fish Physiology and Genomics Laboratory) \- Director of INRAE fish physiology and genomics laboratory (since 2016)

Publications

jerome-montfort
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Looking for a needle in a haystack: de novo phenotypic target identification reveals Hippo pathway-mediated miR-202 regulation of egg production

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Fernanda de Mello , Thuy Thao Vi Nguyen
Nucleic Acids Research, 2024, 52 (2), pp.738-754. ⟨10.1093/nar/gkad1154⟩
Article dans une revue hal-04501492v1
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
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Deciphering sex-specific miRNAs as heat-recorders in zebrafish

Tosca A van Gelderen , Jérôme Montfort , José Antonio Álvarez-Dios , Violette Thermes , Francesc Piferrer
Scientific Reports, 2022, 12, pp.18722. ⟨10.1038/s41598-022-21864-3⟩
Article dans une revue hal-03886962v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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FishmiRNA: An evolutionarily supported microRNA annotation and expression database for ray-finned fishes

Thomas Desvignes , Philippe Bardou , Jérôme Montfort , Jason Sydes , Cervin Guyomar
Molecular Biology and Evolution, 2022, 39 (2), pp.msac004. ⟨10.1093/molbev/msac004⟩
Article dans une revue hal-03528022v1
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auts2 Features and Expression Are Highly Conserved during Evolution despite Different Evolutionary Fates Following Whole Genome Duplication

Constance Merdrignac , Antoine Clement , Jérôme Montfort , Florent Murat , Julien Bobe
Cells, 2022, 11 (17), pp.2694. ⟨10.3390/cells11172694⟩
Article dans une revue hal-03777731v1
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Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish

Daniel Żarski , Aurelie Le Cam , Thomas Frohlich , Miwako Kösters , Christophe C. Klopp
Genomics, 2021, 113 (6), pp.3811-3826. ⟨10.1016/j.ygeno.2021.09.003⟩
Article dans une revue hal-03342588v2
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Circulating miRNA repertoire as a biomarker of metabolic and reproductive states in rainbow trout

Emilie Cardona , Cervin Guyomar , Thomas Desvignes , Jérôme Montfort , Samia Guendouz
BMC Biology, 2021, 19 (1), ⟨10.1186/s12915-021-01163-5⟩
Article dans une revue hal-03436712v1
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Evolution after whole genome duplication: teleost microRNAs

Thomas Desvignes , Jason Sydes , Jerôme Montfort , Julien Bobe , John Postlethwait
Molecular Biology and Evolution, 2021, ⟨10.1093/molbev/msab105⟩
Article dans une revue hal-03205656v1
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Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca

Daniel Żarski , Aurélie Le Cam , Joanna Nynca , Christophe C. Klopp , Sławomir Ciesielski
Molecular Reproduction and Development, 2020, 87 (9), pp.934-951. ⟨10.1002/mrd.23414⟩
Article dans une revue hal-02935418v1
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Domestication may affect the maternal mRNA profile in unfertilized eggs, potentially impacting the embryonic development of Eurasian perch (Perca fluviatilis)

Taina Rocha de Almeida , Maud Alix , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
PLoS ONE, 2019, 14 (12), pp.1-25. ⟨10.1371/journal.pone.0226878⟩
Article dans une revue hal-02627554v1
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MicroRNAs related to cholesterol metabolism affected by vegetable diet in rainbow trout (Oncorhynchus mykiss) from control and selected lines

Tengfei Zhu , Geneviève Corraze , Elisabeth Plagnes-Juan , Jérôme Montfort , Julien Bobe
Aquaculture, 2019, 498, pp.132-142. ⟨10.1016/j.aquaculture.2018.08.058⟩
Article dans une revue hal-01870570v1
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MiR-202 controls female fecundity by regulating medaka oogenesis

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
PLoS Genetics, 2018, 14 (9), pp.1-26. ⟨10.1371/journal.pgen.1007593⟩
Article dans une revue hal-01871468v1
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Genome-wide identification of novel ovarian-predominant miRNAs: new insights from the medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
Scientific Reports, 2017, 7 (1), pp.1-11. ⟨10.1038/srep40241⟩
Article dans une revue hal-01594581v1

Transcriptomic profiling of egg quality in Sea bass (Dicentrarchus labrax) sheds light on genes involved in ubiquitination and translation

Daniel Żarski , Thuy Thao Vi Nguyen , Aurélie Le Cam , Jérôme Montfort , Gilbert Dutto
Marine Biotechnology, 2017, 19 (1), pp.102-115. ⟨10.1007/s10126-017-9732-1⟩
Article dans une revue hal-01464069v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Article dans une revue hal-01788671v1

Inhibition of zygotic DNA repair: transcriptome analysis of the offspring in trout [i](Oncorhynchus mykiss)[/i]

C. Fernández-Díez , S. González-Rojo , Jérôme Montfort , Aurélie Le Cam , Julien Bobe
Reproduction, 2015, 149 (1), pp.101-111. ⟨10.1530/REP-14-0382⟩
Article dans une revue hal-01183015v1

A comparison between egg trancriptomes of cod and salmon reveals species-specific traits in eggs for each species

Anna Wargelius , Tomasz Furmanek , Jérôme Montfort , Aurélie Le Cam , Lene Kleppe
Molecular Reproduction and Development, 2015, 82, pp.397-404. ⟨10.1002/mrd.22487⟩
Article dans une revue hal-01205122v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Article dans une revue hal-01193812v1

Identification of differentially expressed miRNAs and their potential targets during fish ovarian development

Amélie Juanchich , Aurélie Le Cam , Jérôme Montfort , Yann Guiguen , Julien Bobe
Biology of Reproduction, 2013, 88 (5), pp.128, 1-11. ⟨10.1095/biolreprod.112.105361⟩
Article dans une revue hal-01205066v1
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Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Article dans une revue hal-01205069v1
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Oocyte-somatic cells interactions, lessons from evolution.

Cathy Charlier , Jérôme Montfort , Olivier Chabrol , Daphné Brisard , Thuy Thao Vi Nguyen
BMC Genomics, 2012, 13 (1), pp.560. ⟨10.1186/1471-2164-13-560⟩
Article dans une revue hal-00753310v1

Effect of photoperiod manipulation on rainbow trout (Oncorhynchus mykiss) egg quality: A genomic study

Jérôme Montfort , Diane D. Esquerre , Karine Hugot , Alexis Fostier , Julien Bobe
Aquaculture, 2007, 268 (1-4), pp.13-22. ⟨10.1016/j.aquaculture.2007.04.027⟩
Article dans une revue hal-02664448v1
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Identification of new participants in the rainbow trout (Oncorhynchus mykiss) oocyte maturation and ovulation processes using cDNA microarrays

Julien Bobe , Jérôme Montfort , Thuy Thao Vi Nguyen , Alexis Fostier
Reproductive Biology and Endocrinology, 2006, 4:39, pp.1-16. ⟨10.1186/1477-7827-4-39⟩
Article dans une revue hal-02658072v1

Hippo pathway-mediated regulation of micropyle formation by microRNA 202 (miR-202) in the fish oocyte

Sarah JANATI IDRISSI , Mariana Roza de Abreu , Cervin Guyomar , Martin Pšenička , Fernanda de Mello
12. International Symposium on Reproductive Physiology of Fish, May 2023, Chersonissos, Greece
Communication dans un congrès hal-04210922v1

Difficulties to compare egg quality: insights from a transcriptomic analysis

Taina Rocha de Almeida , Julien Bobe , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62
Communication dans un congrès hal-02282230v1

Functional and proteomic characterisation of salmonid coelomic fluid

Aurélie Guého , Hélène Rime , Emmanuelle Com , Régis Lavigne , Blandine Guevel
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.59-59
Communication dans un congrès hal-03186872v1

Circulating microRNA in plasma and ovarian fluid as potential non invasive biomarkers of nutrition and reproduction of female rainbow trout (Oncorhynchus mykiss)

Emilie Cardona , Jérôme Montfort , Hughes Parrinello , Laurent Journot , Julien Bobe
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany
Communication dans un congrès hal-02284505v1

Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcripts

D. Żarski , Aurélie Le Cam , J. Nynca , Christophe C. Klopp , S. Ciesielski
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p
Communication dans un congrès hal-02317179v1
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A transcriptomic comparison suggests an influence of the domestication process on egg quality in Eurasian Perch (Perca fluviatilis)

Taina Rocha de Almeida , M. Alix , B. Schaerlinger , Aurélie Le Cam , Jérôme Montfort
11. International Symposium on Reproductive Physiology of Fish, Instituto Nacional de Pesquisas da Amazônia (INPA). Manaus, BRA., Jun 2018, Manaus, Brazil. 251 p
Communication dans un congrès hal-01812820v1

Expression of miRNA and target genes was affected by genetic selection of rainbow trout and plant-based diet

Tengfei Zhu , Geneviève Corraze , Elisabeth Plagnes- Juan , Jérôme Montfort , Julien Bobe
Aquaculture Europe 2017, European Aquaculture Society (EAS). BEL., Oct 2017, Dubrovnik, Croatia
Communication dans un congrès hal-01606808v1

Transcriptomic analysis of Eurasian perch (Perca fluviatilis) eggs assigned to distinct groups of quality

Taina Rocha de Almeida , Bérénice Schaerlinger , Aurélie Le Cam , Maud Alix , Jérôme Montfort
6. International Workshop on the Biology of Fish Gametes, University of South Bohemia in České Budějovice. CZE., Sep 2017, Vodnany, Czech Republic. 156 p
Communication dans un congrès hal-01579299v1
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Identification of novel ovarian predominant MiRNAs in medaka

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
9. European Zebrafish Meeting, Jun 2015, Oslo, Norway
Communication dans un congrès hal-02742954v1
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What makes a good egg ? Molecular mechanisms defining egg developmental competence in teleost fish

Julien Bobe , Aurélien Bouleau , Caroline Cheung , Ozlem Yilmaz , Thuy Thao Vi Nguyen
1. Journées du GdR 3606 Repro, Université de Rennes 1 (UR1). Rennes, FRA., Apr 2015, Rennes, France. 105 p
Communication dans un congrès hal-01897087v1

A comparison between egg transcriptomes of cod and salmon reveals species specific traits in eggs for each species

Anna Wargelius , T. Furmanek , Jérôme Montfort , Aurélie Le Cam , L. Kleppe
10. International Symposium on Reproductive Physiology of Fish, Center of Marine Sciences (CCMAR). PRT., May 2014, Olhão, Portugal
Communication dans un congrès hal-02744047v1

Sperm genome integrity and DNA repair in trout development: transcriptome analysis of the offspring

C. Fernández-Díez , S. González Rojo , Julien Bobe , Jérôme Montfort , Aurélie Le Cam
4. International Workshop on The Biology of Fish Gametes, Sep 2013, Albufeira, Portugal. 261 p
Communication dans un congrès hal-02746440v1

Identification of differentially expressed miRNAs and their potential targets during fish oogenesis

Amélie A. Juanchich , Aurélie Le Cam , Jérôme Montfort , Yann Guiguen , Julien Bobe
4. International Workshop on The Biology of Fish Gametes, Sep 2013, Albufeira, Portugal. 261 p
Communication dans un congrès hal-02745190v1

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier O. Bouchez , Cédric Cabeau , Olivier Kah
Animation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France
Communication dans un congrès hal-02747070v1

Oscile

Cathy Charlier , Jérôme Montfort , Olivier Chabrol , François Moreews , M. Salhab
VIIIe Colloque Agenae / Genanimal, Nov 2010, Bordeaux, France
Communication dans un congrès inria-00540830v1
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Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel

Gilles Monod , Daniel Baron , Julien Bobe , Alexis Fostier , Yann Guiguen
Colloque de restitution du Programme National d'Ecotoxicologie. PNETOX, Ministère de l'Ecologie, de l'Energie, du Développement durable et de l'Aménagement du Territoire. FRA., Oct 2008, Lille, France
Communication dans un congrès hal-02756581v1

Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel

Gilles Monod , Daniel Baron , Julien Bobe , Alexis Fostier , Yann Guiguen
Colloque PNETOX, Nov 2005, Paris, France
Communication dans un congrès hal-02763366v1

The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology research

Sandrine Aegerter , Daniel Baron , C. Carpentier , François Chauvigné , Christelle Dantec
Experimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom
Communication dans un congrès hal-02761230v1

auts2 expression is highly conserved during evoluion despite different evolutionary fates following whole genome duplication

Constance Merdrignac , Antoine Clement , Jérôme Montfort , Florent Murat , Julien Bobe
International Congres on the Biology of Fish, Jun 2022, Montpellier, France
Poster de conférence hal-03777897v1

Micro ARNs circulants dans le plasma et le fluide ovarien comme potentiels biomarqueurs non invasifs de la nutrition et de la reproduction de la truite arc-en-ciel (Oncorhynchus mykiss)

Emilie Cardona , Jérôme Montfort , Hugues Parrinello , Laurent Journot , Julien Bobe
Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés
Poster de conférence hal-02735025v1

Functional and proteomic characterisation of salmonid coelomic fluid

Aurélie Guého , Hélène Rime , Emmanuelle Com , Régis Lavigne , Blandine Guevel
Aquaculture Europe 2019, Oct 2019, Berlin, Germany. , 2019, Our future: growing from water
Poster de conférence hal-02284509v1

Identification and functional characterization of ovarian and maternally-inherited miRNAs in medaka

Stéphanie Gay , Jérôme Montfort , Fabrice Legeai , Thuy Thao Vi Nguyen , Thomas Desvignes
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.153-153, 2019
Poster de conférence hal-02282325v1

Functional and proteomic characterisation of salmonid coelomic fluid

Aurélie Guého , Hélène Rime , Emmanuelle Com , Régis Lavigne , Blandine Guevel
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. , pp.59-59, 2019
Poster de conférence hal-02282309v1

Caractérisation protéomique du liquide coelomique de salmonidés

Aurélie Guého , Hélène Rime , Emmanuelle Com , R. Lavigne , B. Guével
Séminaire Défis Scientifiques du Département Physiologie Animale et Systèmes d'Elevage, Nov 2019, Rennes, France. 85 p., 2019, Recueil des résumés
Poster de conférence hal-02735565v1
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MiR-202 regulates female fecundity by controlling early follicle development in medaka ovary

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Clara Delahaye
11. International Symposium on Reproductive Physiology of Fish, Jun 2018, Manaus, Brazil. 251 p., 2018, New frontiers in reproductive diversity in a changing environment
Poster de conférence hal-02437626v1

miR-202, un microARN clé pour le succès reproducteur des femelles chez le poisson médaka

Stéphanie Gay , Jérôme Bugeon , Amine Bouchareb , Laure Henry , Jérôme Montfort
Journées d'Animation Scientifique du département Phase (JAS Phase 2018), Apr 2018, Rennes, France. , 2018, Journées d’animation scientifiques du département Phase - Recueil des résumés
Poster de conférence hal-01771815v1

Novel maternal-effect genes shed new light on the molecular mechanisms controlling fish egg quality

Caroline Cheung , Thuy Thao Vi Nguyen , Aurélie Le Cam , Jérôme Montfort , Julien Bobe
6. International Workshop on the Biology of Fish Gametes, Sep 2017, Vodnany, Czech Republic. University of South Bohemia in Ceske Budejovice ; Faculty of Fisheries and Protection of Waters, 1st, 156 p., 2017, 6. International Workshop on the Biology of Fish Gametes
Poster de conférence hal-01579294v1

Transcriptomic analysis of Eurasian Perch (Perca fluviatilis) eggs assigned to various groups of qualities according to a statistically based analysis

Taina Rocha de Almeida , Bérénice Schaerlinger , Aurélie Le Cam , Alix Maud , Jérôme Montfort
7. Fish and Shellfish Larviculture Symposium, Sep 2017, Ghent, Belgium. 2017
Poster de conférence hal-02935650v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
49. Annual Meeting of the Society for the Study of Reproduction, Jul 2016, San Diego, California, United States. , 405 p., 2016, SSR 2016 Systems Biology of Reproduction
Poster de conférence hal-02742929v1

Identification of novel ovarian predominant miRNAs in medaka (Oryzias latipes)

Amine Bouchareb , Aurélie Le Cam , Jérôme Montfort , Stéphanie Gay , Thuy Thao Vi Nguyen
10. Meeting SifrARN, Mar 2016, Toulouse, France. , 2016, SifrARN 2016
Poster de conférence hal-02742939v1

Gene expression in bovine and mouse cumulus cells in relation with oocyte maturation

Daphné Brisard , Franck Chesnel , Cathy Charlier , Jérôme Montfort , Joëlle Dupont
4. COST Action FA0702 GEMINI General Conference - Maternal Interactions with Gametes and Embryos, Sep 2011, Gijon, Spain. , 2011
Poster de conférence hal-02745042v1

Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel

Daniel Baron , Julien Bobe , Peter Fiegehen , Alexis Fostier , Yann Guiguen
Colloque de restitution PNETOX "Apport de la recherche à la gestion des milieux", Mar 2004, Lyon, France. 2004
Poster de conférence hal-02829629v1

Toxicogénomique des perturbateurs endocriniens de la reproduction chez la truite arc-en-ciel

Gilles Monod , Daniel Baron , Julien Bobe , Alexis Fostier , Yann Guiguen
Programme national d'écotoxicologie : point sur les recherches en cours 2001-2005, Documentation française, 2008, Environnement en Débat, 978-2-11-006669-5
Chapitre d'ouvrage hal-02824584v1