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Julien Bobe

32
Documents
Affiliations actuelles
  • 1002344
Identifiants chercheurs

Présentation

**Current position**. Research Director (DR1) and director of the Fish Physiology and Genomics laboratory. **Employment history** \- - Ph.D. University of Rennes I (April 2001). \- - Habilitation à Diriger les Recherches, University of Rennes I (March 2009). \- - Visiting research student in Pr. FW Goetz Laboratory. 1998-2000 (Univ. Notre Dame, USA). \- - INRAE Research Scientist. 2001-2009 (SCRIBE Laboratory). \- - INRAE Research Director and group leader. 2010-2015 (Fish Physiology and Genomics Laboratory) \- Director of INRAE fish physiology and genomics laboratory (since 2016)

Publications

0000-0001-7126-5477
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Genome structures resolve the early diversification of teleost fishes

Elise Parey , Alexandra Louis , Jérôme Montfort , Olivier Bouchez , Céline Roques
Science, 2023, 379 (6632), pp.572-575. ⟨10.1101/2022.04.07.487469⟩
Article dans une revue hal-03765882v1
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An ancient truncated duplication of the anti‐Müllerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

Ming Wen , Qiaowei Pan , Elodie Jouanno , Jérôme Montfort , Margot Zahm
Molecular Ecology Resources, 2022, pp.1-18. ⟨10.1111/1755-0998.13620⟩
Article dans une revue hal-03652234v1
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Neurodevelopment vs. the immune system: Complementary contributions of maternally-inherited gene transcripts and proteins to successful embryonic development in fish

Daniel Żarski , Aurelie Le Cam , Thomas Frohlich , Miwako Kösters , Christophe C. Klopp
Genomics, 2021, 113 (6), pp.3811-3826. ⟨10.1016/j.ygeno.2021.09.003⟩
Article dans une revue hal-03342588v2
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Domestication modulates the expression of genes involved in neurogenesis in high‐quality eggs of Sander lucioperca

Daniel Żarski , Aurélie Le Cam , Joanna Nynca , Christophe C. Klopp , Sławomir Ciesielski
Molecular Reproduction and Development, 2020, 87 (9), pp.934-951. ⟨10.1002/mrd.23414⟩
Article dans une revue hal-02935418v1
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Identification of the master sex determining gene in Northern pike (Esox lucius) reveals restricted sex chromosome differentiation

Qiaowei Pan , Romain Feron , Ayaka Yano , René Guyomard , Elodie Jouanno
PLoS Genetics, 2019, 15 (8), pp.e1008013. ⟨10.1371/journal.pgen.1008013⟩
Article dans une revue inserm-02279967v1
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Domestication may affect the maternal mRNA profile in unfertilized eggs, potentially impacting the embryonic development of Eurasian perch (Perca fluviatilis)

Taina Rocha de Almeida , Maud Alix , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
PLoS ONE, 2019, 14 (12), pp.1-25. ⟨10.1371/journal.pone.0226878⟩
Article dans une revue hal-02627554v1

Evolution of gene expression after whole-genome duplication: New insights from the spotted gar genome

Jérémy Pasquier , Ingo Braasch , Peter Batzel , Cédric Cabau , Jérôme Montfort
Journal of Experimental Zoology Part B: Molecular and Developmental Evolution, 2017, 328 (7), pp.709 - 721. ⟨10.1002/jez.b.22770⟩
Article dans une revue hal-01788671v1
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Compacting and correcting Trinity and Oases RNA-Seq de novo assemblies

Cédric Cabau , Frédéric Escudie , Anis Djari , Yann Guiguen , Julien Bobe
PeerJ, 2017, 5, pp.e2988. ⟨10.7717/peerj.2988⟩
Article dans une revue hal-01506620v1
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Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database.

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Jouanno , Dany Severac
BMC Genomics, 2016, 17 (1), pp.368. ⟨10.1186/s12864-016-2709-z⟩
Article dans une revue hal-01487023v1
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The rainbow trout genome provides novel insights into evolution after whole-genome duplication in vertebrates.

Camille Berthelot , Frédéric Brunet , Domitille Chalopin , Amélie Juanchich , Maria Bernard
Nature Communications, 2014, 5, pp.1-10. ⟨10.1038/ncomms4657⟩
Article dans une revue hal-01193812v1
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Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier Bouchez , Cédric Cabeau , Olivier Kah
Gene, 2012, 500 (1), pp.32-39. ⟨10.1016/j.gene.2012.03.053⟩
Article dans une revue hal-01205069v1
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UN EXTRAIT DE LEVURE AMELIORE L'EFFICACITE D'UN REGIME A BASE DE PROTEINES ANIMALES TRANSFORMEES CHEZ LA TRUITE ARC-EN-CIEL ET MODULE LA REPONSE INTESTINALE

Laura Frohn , Sandrine Skiba-Cassy , Frédéric Terrier , Pierre Aguirre , Cervin Guyomar
7èmes Journées de la Recherche Piscicole, ITAVI, Jul 2022, Paris, France
Communication dans un congrès hal-04311786v1
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A yeast product improves the efficiency of a processed animal protein diet in rainbow trout by modulating the gut response

Laura Frohn , Sandrine Skiba-Cassy , Frédéric Terrier , Pierre Aguirre , Cervin Guyomar
International Symposium of Fish Nutrition and Feeding, ISFNF, Jun 2022, Sorrento, Italy
Communication dans un congrès hal-04311746v1

Difficulties to compare egg quality: insights from a transcriptomic analysis

Taina Rocha de Almeida , Julien Bobe , Aurélie Le Cam , Christophe C. Klopp , Jérôme Montfort
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.61-62
Communication dans un congrès hal-02282230v1

Transcriptomic profiling reveals novel biomarkers of egg quality in domesticated pikeperch, Sander lucioperca

Daniel Zarski , Joanna Nynca , Aurélie Le Cam , Christophe C. Klopp , Sławomir Ciesielski
7. International Workshop on the Biology of Fish Gametes, Sep 2019, Rennes, France. pp.69-70
Communication dans un congrès hal-02282331v1

Transcriptomic profiling of eggs of pikeperch (Sander lucioperca) reveals novel egg-quality-associated transcripts

D. Żarski , Aurélie Le Cam , J. Nynca , Christophe C. Klopp , S. Ciesielski
Aquaculture Europe 2019, European Aquaculture Society (EAS). BEL., Oct 2019, Berlin, Germany. 1672 p
Communication dans un congrès hal-02317179v1

Identification of the master sex determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and the dynamic evolution of sex determination system within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
1. European Symposium on Sex Determination in Vertebrates, Mar 2017, Dinard, France
Communication dans un congrès hal-01594642v1

Evolution of gene expression in fish: The PhyloFish database

Jérémy Pasquier , Cédric Cabau , Thuy Thao Vi Nguyen , Elodie Dupin-De-Beyssat , Dany Severac
8. Aquatic Models of Human Disease Conference, Jan 2017, Birmingham, United States
Communication dans un congrès hal-01607208v1

Identification of the master determining gene in Northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Dupin-De-Beyssat
19. European Testis Workshop, Jun 2016, Saint-Malo, France
Communication dans un congrès hal-02742995v1

Identification of the master sex determining gene in northern pike (Esox lucius, Esociformes, Teleosts) and its evolution within esociformes

Qiaowei Pan , Ayaka Yano , Jennifer Anderson , Julien Bobe , Elodie Jouanno
7. International Symposium on the Biology Vertebrate Sex Determination, Apr 2015, Kona, Hawaï, United States
Communication dans un congrès hal-02741864v1
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Integration of European eel transcriptome into the PHYLOFISH project, a high throughput phylogenomic analysis designed to study teleost gene evolution after whole genome duplication

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
Eel genome symposium 2014, Jan 2014, Leiden, Netherlands
Communication dans un congrès hal-02743789v1

Characterization of rainbow trout gonad, brain and gill deep cDNA repertoires using a Roche 454-Titanium sequencing approach

Aurélie Le Cam , Julien Bobe , Olivier O. Bouchez , Cédric Cabeau , Olivier Kah
Animation de l'axe technologique génomique de Biogenouest, Plateforme Génomique Santé Biogenouest®. FRA., Apr 2011, Rennes, France
Communication dans un congrès hal-02747070v1

The INRA AGENAE program and the Agenae trout EST collections: first results applied to fish physiology research

Sandrine Aegerter , Daniel Baron , C. Carpentier , François Chauvigné , Christelle Dantec
Experimental Biology Annual Main Meeting, Mar 2004, Edinburgh, United Kingdom
Communication dans un congrès hal-02761230v1

Evolution des gènes et des génomes dans une démarche de soutien à la diversification d’espèces aquacoles

Julien Bobe , Ingo Braasch , Jérémy Pasquier , Christophe C. Klopp , Hughes Parrinnello
Journées d’Animation des Crédits Incitatifs du Département de Physiologie Animale et Systèmes d’Elevage (JACI Phase 2016), Apr 2016, Tours, France. , 2016, Crédits incitatifs financés entre 2011 et 2014
Poster de conférence hal-02740982v1

The PhyloFish project: an RNA-Seq approach coupled to high throughput phylogenomic analyses to study whole genome duplication impact on teleosts

Jérémy Pasquier , Cédric Cabau , P. Gouret , L. Journot , Christophe C. Klopp
17. Evolutionary Biology Meeting at Marseilles, Sep 2013, Marseille, France. 2013, 17th Evolutionary Biology Meeting at Marseilles
Poster de conférence hal-02745585v1

Gene annotation with evolutionary support in teleosts with a focus on the salmonid lineage

Julien Bobe , M. Westerfield , Pierre Pontarotti , Christophe C. Klopp , Laurent Journot
1. International Conference on Integrative Salmonid Biology ICISB, Jun 2012, Oslo, Norway. 2012, ICISB 2012
Poster de conférence hal-02746168v1

MicroRNAs expression during fish oogenesis and sex differentiation

Amélie A. Juanchich , Christophe C. Klopp , Yann Guiguen , Julien Bobe
9. International Symposium on Reproductive Physiology of Fish, Aug 2011, Thrissur (Cochin), India. Indian Society for Education and Environment, Indian Journal of Science and Technology, 4 (S8), 2011, Proceedings of 9th International Symposium on Reproductive Physiology of Fish
Poster de conférence hal-02746432v1

Analyse phylogénomique des duplications géniques chez les poissons téléostéens : une approche PAR RNASeq

Julien Bobe , Yann Guiguen , John H. Postlethwait , Laurent Journot , Christophe C. Klopp
[Rapport de recherche] ANR-10-GENM-017, University of Oregon; Centre National de la Recherche Scientifique (CNRS); Aix Marseille Université (AMU); INRA SCRIBE Station Commune de Recherche en Ichtyophysiologie. Biodiversité et Environnement. 2015
Rapport hal-02801550v1