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Julien Allali

27

Documents

Publications

	A new method for evaluating the impacts of semantic similarity measures on the annotation of gene sets Aarón Ayllón-Benítez , Fleur Mougin , Julien Allali , Rodolphe Thiébaut , Patricia Thebault PLoS ONE, 2018, 13 (11), pp.e0208037. ⟨10.1371/journal.pone.0208037⟩ Article dans une revue hal-01938961v1
	BRASERO: A resource for benchmarking RNA secondary structure comparison algorithms Julien Allali , Cédric Saule , Cedric Chauve , Yves d'Aubenton-Carafa , Alain Denise Advances in Bioinformatics, 2012, 2012, pp.1-5. ⟨10.1155/2012/893048⟩ Article dans une revue hal-00647725v1
	Efficient chaining of seeds in ordered trees Julien Allali , Cedric Chauve , Pascal Ferraro , Anne-Laure Gaillard Journal of Discrete Algorithms, 2012 Article dans une revue hal-00647714v1
	Toward a general framework for polyphonic comparison Julien Allali , Pascal Ferraro , Pierre Hanna , C.S. Iliopoulos , Matthias Robine Fundamenta Informaticae, 2009, 97 (3), pp.331--346 Article dans une revue hal-00523428v1
	Indexing gapped-factors using a tree Pierre Peterlongo , Julien Allali , Marie-France Sagot International Journal of Foundations of Computer Science, 2008, 19 (1), pp.71-87. ⟨10.1142/S0129054108005541⟩ Article dans une revue inria-00179719v1
	A multiple layer model to compare RNA secondary structures Julien Allali , Marie-France Sagot Software: Practice and Experience, 2008, 38 (8), pp.775-792. ⟨10.1002/spe.846⟩ Article dans une revue hal-00306662v1
	A new distance for high level RNA secondary structure comparison Julien Allali , Marie-France Sagot IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2, pp.3--14 Article dans une revue hal-00306658v1

	Chaining Sequence/Structure Seeds for Computing RNA Similarity Laetitia Bourgeade , Cedric Chauve , Julien Allali First Workshop on Computational Methods for Structural RNAs - CMRS'14, Sep 2014, Strasbourg, France Communication dans un congrès hal-01019797v1
	Efficient chaining of seeds in ordered trees Julien Allali , Cédric Chauve , Pascal Ferraro , Anne-Laure Gaillard 21st International Workshop on Combinatorial Algorithms, Jul 2010, London, United Kingdom Communication dans un congrès hal-00490028v1
	Combinatorial detection of arrhytmia Julien Allali , Pavlos Antoniou , Pascal Ferraro , C.S. Iliopoulos , Spiros Michalakopoulos 3rd International Conference on Bio-inspired Systems and Signal Processing, Jan 2010, Valencia, Spain. pp.180--187 Communication dans un congrès hal-00523484v1
	Overlay problems for music and combinatorics Julien Allali , Pavlos Antoniou , Pascal Ferraro , Costas Iliopoulos , Spiros Michalakopoulos International Conference on Auditory Display, May 2009, Copenhagen, Denmark. pp.138--143 Communication dans un congrès hal-00411792v1
	Extending Alignment Algorithm for Polyphonic Comparison Pascal Ferraro , Julien Allali , Pierre Hanna , Matthias Robine International Computer Music Modeling and Retrieval Conference (CMMR), 2009, Denmark. pp.206-209 Communication dans un congrès hal-00391094v1
	Validation and Decomposition of Partially Occluded Images with Holes Pavlos Antoniou , Julien Allali , Costas Iliopoulos , Pascal Ferraro Prague Stringology Conference, Aug 2009, Prague, Czech Republic. pp.129--136 Communication dans un congrès hal-00403709v1
	Benchmarking RNA secondary structure comparison algorithms Julien Allali , Yves d'Aubenton-Carafa , Cedric Chauve , Alain Denise , Christine Drevet JOBIM'08, 2008, Lille, France. pp.67-68 Communication dans un congrès hal-00375710v1
	Improvements of Alignment Algorithms for Polyphonic Music Retrieval Pierre Hanna , Matthias Robine , Pascal Ferraro , Julien Allali Computer Music Modeling and Retrieval 2008, 2008, Denmark. pp.244-251 Communication dans un congrès hal-00306949v1
	Adaptation of String Matching Algorithms for Identification of Near-Duplicate Music Documents Matthias Robine , Pierre Hanna , Pascal Ferraro , Julien Allali Workshop on Plagiarism Analysis, Authorship Identification, and Near-Duplicate Detection (PAN07), Jul 2007, Amsterdam, Netherlands. pp.37--43 Communication dans un congrès hal-00306567v1
	Local Transpositions in Alignment of Polyphonic Musical Sequences Julien Allali , Pascal Ferraro , Pierre Hanna , Costas Iliopoulos Proceedings of the 14th String Processing and Information Retrieval Symposium (SPIRE07), 2007, Chile. pp.26-38 Communication dans un congrès hal-00307877v1
	The Gapped-Factor Tree Pierre Peterlongo , Julien Allali , Marie-France Sagot Prague Stringology Conference 2006, 2006, Prague, Czech Republic. pp.182--196 Communication dans un congrès hal-00306572v1
	A Multiple Graph Layers Model with Application to RNA Secondary Structures Comparison Julien Allali , Marie-France Sagot String Processing and Information Retrieval 2005 (SPIRE 2005), Nov 2005, Buenos Aires, Argentina. pp.348--359, ⟨10.1007/11575832_39⟩ Communication dans un congrès hal-00306660v1
	Novel tree edit operations for RNA secondary structure comparison Julien Allali , Marie-France Sagot Workshop on Algorithms in Bioinformatics 2004, 2004, Bergen, Denmark. pp.412--425, ⟨10.1007/978-3-540-30219-3_35⟩ Communication dans un congrès hal-00306661v1

	Visualizing RNA Secondary Structure Base Pair Binding Probabilities using Nested Concave Hulls Joris Sansen , Romain Bourqui , Patricia Thebault , Julien Allali , David Auber 5th Symposium on Biological Data Visualization, Jul 2015, Dublin, Ireland Poster de conférence hal-01664524v1

	Detection of Near-Duplicate Musical Documents from a Multi-Level Comparison of Tonal Information Pascal Ferraro , Matthias Robine , Julien Allali , Pierre Hanna , Rocher Thomas Information Extraction from the Internet, iconcept press, pp.129--143, 2011 Chapitre d'ouvrage hal-00643529v1
	Polyphonic alignment algorithms for symbolic music retrieval Julien Allali , Pascal Ferraro , Pierre Hanna , Matthias Robine Ystad, S. and Aramaki, M. and Kronland-Martinet, R. and Jensen, K. Auditory Display, Springer Verlag Berlin, pp.466--482, 2010, LNCS, ⟨10.1007/978-3-642-12439-6_24⟩ Chapitre d'ouvrage hal-00523486v1

	Exemplar Based Assignment of Large Missing Audio Parts using String Matching on Tonal Features Benjamin Martin , Pierre Hanna , Vinh-Thong Ta , Myriam Desainte-Catherine , Julien Allali United States, Patent n° : US61/547,854. 2011 Brevet hal-01006489v1

	Rapport scientifique final du projet E-Fran PERSEVERONS Anne Lehmans , Estelle Blanquet , Fabrice Vandebrouck , Grégory Train , Vincent Liquete [Rapport de recherche] Université de Bordeaux. 2022 Rapport hal-03723508v1
	The at-most $k$-deep factor tree Julien Allali , Marie-France Sagot 2004 Rapport hal-00627813v1

	Comparaison de structures secondaires d'ARN Julien Allali Informatique [cs]. Université de Marne la Vallée, 2004. Français. ⟨NNT : ⟩ Thèse tel-00637131v1