Juan Cortés

114

Documents

Affiliations actuelles

392741

Identifiants chercheurs

juan-cortes
ResearcherId : F-7545-2019
0000-0002-4660-0306
IdRef : 07673658X

Contact

Domaines de recherche

Robotique [cs.RO] Intelligence artificielle [cs.AI] Bio-informatique [q-bio.QM] Biologie structurale [q-bio.BM]

Publications

	A Sensitivity-Aware Motion Planner (SAMP) to Generate Intrinsically-Robust Trajectories Simon Wasiela , Paolo Robuffo Giordano , Juan Cortés , Thierry Simeon IEEE International Conference on Robotics and Automation (ICRA), 2023, London, United Kingdom Communication dans un congrès hal-03808933v2
	Computational Design of miniprotein binders Younes Bouchiba , Juan Cortés , Thomas Schiex , Sophie Barbe Journées Scientifiques du GDR ChemBio, Jun 2022, Toulouse, France Communication dans un congrès hal-04223586v1
	Computational Design of miniprotein binders Younes Bouchiba , Manon Ruffini , Juan Cortés , Thomas Schiex , Sophie Barbe GGMM 2021, Sep 2021, Villeneuve d’Ascq, France Communication dans un congrès hal-04223596v1
	A case study of automated dual-arm manipulation in industrial applications Yoann Solana , Hector Herrero Cueva , Alvaro Rubio Garcia , Sergio Martinez Calvo , Urko Esnaola Campos 24th IEEE International Conference on Emerging Technologies and Factory Automation (ETFA 2019), Sep 2019, Zaragoza, Spain. pp.563-570, ⟨10.1109/ETFA.2019.8869209⟩ Communication dans un congrès hal-02327826v1
	Multi-Robot Path Planning with Maintenance of Generalized Connectivity Yoann Solana , Michele Furci , Juan Cortés , Antonio Franchi 2017 IEEE 1st International Symposium on Multi-Robot and Multi-Agent Systems, Dec 2017, Los Angeles, United States Communication dans un congrès hal-01658557v1
	Combining System Design and Path Planning Laurent Denarie , Kevin Molloy , Marc Vaisset , Thierry Simeon , Juan Cortés Workshop on the Algorithmic Foundations of Robotics (WAFR), Dec 2016, San Francisco, United States Communication dans un congrès hal-01364042v1
	A Reinforcement Learning Approach to Protein Loop Modeling Kevin Molloy , Nicolas Buhours , Marc Vaisset , Thierry Simeon , Étienne Ferré IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2015, Hamburg, Germany Communication dans un congrès hal-01206128v1
	Enhancing sampling-based kinodynamic motion planning for quadrotors Alexandre Boeuf , Juan Cortés , Rachid Alami , Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2015, Hamburg, Germany Communication dans un congrès hal-01231717v1
	Efficient sampling-based approaches to optimal path planning in complex cost spaces Didier Devaurs , Thierry Simeon , Juan Cortés International Workshop on the Algorithmic Foundations of Robotics (WAFR), Aug 2014, Istanbul, Turkey. pp.16 Communication dans un congrès hal-01062970v1
	Sampling-based methods for a full characterization of energy landscapes of small peptides Didier Devaurs , Amarda Shehu , Thierry Simeon , Juan Cortés IEEE International Conference on Bioinformatics and Biomedicine, Nov 2014, Belfast, United Kingdom. 8 p Communication dans un congrès hal-01070405v1
	A multi-tree extension of the Transition-based RRT: Application to ordering-and-pathfinding problems in continuous cost spaces Didier Devaurs , Thierry Simeon , Juan Cortés IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), Sep 2014, Chicago, United States. 6 p Communication dans un congrès hal-01057030v1
	Planning agile motions for quadrotors in constrained environments Alexandre Boeuf , Juan Cortés , Rachid Alami , Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2014, Chicago, United States. 6p., ⟨10.1109/IROS.2014.6942564⟩ Communication dans un congrès hal-01187138v1
	A motion planning approach to 6-D manipulation with aerial towed-cable systems Montserrat Manubens , Didier Devaurs , Lluis Ros , Juan Cortés International Micro Air Vehicle Conference and Flight Competition (IMAV '13), Sep 2013, Toulouse, France. 8p Communication dans un congrès hal-00872262v1
	Enhancing the Transition-based RRT to deal with complex cost spaces Didier Devaurs , Thierry Simeon , Juan Cortés Proc. IEEE ICRA '13, May 2013, Karlsruhe, Germany. pp. 4105-4110 Communication dans un congrès hal-00872224v1
	Motion planning for 6-D manipulation with aerial towed-cable systems Montserrat Manubens , Didier Devaurs , Lluis Ros , Juan Cortés Robotics: Science and Systems (RSS), Jun 2013, Berlin, Germany. 8p Communication dans un congrès hal-00872234v1
	A multi-tree approach to compute transition paths on energy landscapes Didier Devaurs , Marc Vaisset , Thierry Simeon , Juan Cortés Workshop on Artificial Intelligence and Robotics Methods in Computational Biology, AAAI '13, Jul 2013, Bellevue, United States. pp. 8-13 Communication dans un congrès hal-00872247v1
	Coarse-grained elastic networks, normal mode analysis and robotics-inspired methods for modeling protein conformational transitions Ibrahim Al Bluwi , Marc Vaisset , Thierry Simeon , Juan Cortés IEEE International Conference on Bioinformatics and Biomedicine Workshops, Oct 2012, Philadelphia, United States. pp.40-47, ⟨10.1109/BIBMW.2012.6470359⟩ Communication dans un congrès hal-01981799v1
	Costmap planning in high dimensional configuration spaces Romain Iehl , Juan Cortés , Thierry Simeon IEEE/ASME International Conference on Advanced Intelligent Mechatronics (AIM), Jul 2012, Kachsiung, Taiwan Communication dans un congrès hal-01982586v1
	Finding enveloping grasps by matching continuous surfaces Yi Li , Jean-Philippe Saut , Juan Cortés , Thierry Simeon , Daniel Sidobre IEEE International Conference on Robotics and Automation, 2011, Shangai, China Communication dans un congrès hal-01985779v1
	Parallelizing RRT on distributed-memory architectures Didier Devaurs , Thierry Simeon , Juan Cortés Proc. IEEE ICRA '11, May 2011, Shanghai, China. pp. 2261-2266 Communication dans un congrès hal-00872218v1
	Planning human-aware motions using a sampling-based costmap planner Jim Mainprice , Emrah Akin Sisbot , Léonard Jaillet , Juan Cortés , Rachid Alami IEEE International Conference on Robotics and Automation (ICRA 2011), May 2011, Shanghai, China. ⟨10.1109/ICRA.2011.5980048⟩ Communication dans un congrès hal-01976227v1
	Planning pick-and-place tasks with two-hand regrasping Jean-Philippe Saut , Mokhtar Gharbi , Juan Cortés , Daniel Sidobre , Thierry Simeon IEEE/RSJ International Conference on Intelligent Robots and Systems, 2010, Taipei, Taiwan Communication dans un congrès hal-01986173v1
	Coupling robotics and molecular modelling techniques to understand putative functional motion of the thumb-loop in GH-11 xylanase from Thermobacillus xylanilyticus Gabriel Paës , Juan Cortés , Thierry Simeon , Michael O'Donohue , Vinh Tran Lignobiotech One - 2010: 1. Symposium on Biotechnology Applied to Lignocelluloses (Lignobiotech One), Institut National de Recherche Agronomique (INRA). UMR Fractionnement des AgroRessources et Environnement (0614)., Mar 2010, Reims, France Communication dans un congrès hal-02815698v1
	Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH-11 xylanase Gabriel Paës , Juan Cortés , Thierry Simeon , Michael O'Donohue , Vinh Tran Biomass-derived Pentoses : from Biotechnology to Fine Chemistry 2010, Nov 2010, Reims, France Communication dans un congrès hal-02822653v1
	Encoding molecular motions in voxels maps Juan Cortés , Sophie Barbe , Monique Erard , Thierry Siméon IEEE International Conference on Robotics and Automation (ICRA), May 2009, Kobe, Japan. ⟨10.1109/ROBOT.2009.5152248⟩ Communication dans un congrès hal-04296471v1
	Roadmap composition for multi-arm systems path planning Mokhtar Gharbi , Juan Cortés , Thierry Simeon 2009 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS 2009), Oct 2009, St. Louis, United States. pp.2471-2476 Communication dans un congrès hal-01986305v1
	A path planning approach to (dis)assembly sequencing Duc Thanh Le , Juan Cortés , Thierry Simeon 2009 IEEE International Conference on Automation Science and Engineering (CASE 2009), Aug 2009, Bangalore, India. pp.286-291 Communication dans un congrès hal-01986320v1
	Transition-based RRT for path planning in continuous cost spaces Léonard Jaillet , Juan Cortés , Thierry Simeon 2008 IEEE/RSJ International Conference on Intelligent Robots and Systems, Sep 2008, Nice, France. pp.2145-2150 Communication dans un congrès hal-01986342v1
	A sampling-based path planner for dual-arm manipulation Mokthar Gharbi , Juan Cortés , Thierry Simeon 2008 IEEE/ASME International Conference on Advanced Intelligent Mechatronics (AIM), Jul 2008, Xian, China. pp.383-388 Communication dans un congrès hal-01986353v1
	Disassembly path planning for complex articulated objects Juan Cortés , Thierry Simeon IFAC Workshop on Intelligent Assembly and Disassembly, May 2007, Alicante, Spain Communication dans un congrès hal-01993265v1
	Disassembly path planning for objects with articulated parts. Juan Cortés , Thierry Simeon IFAC Workshop on Intelligent Assembly and Disassembly, 2007, Alicante, Spain Communication dans un congrès hal-01989229v1
	Molecular Disassembly With Rrt-Like Algorithms Juan Cortés , Léonard Jaillet , Thierry Simeon 2007 IEEE International Conference on Robotics and Automation (ICRA'07), Apr 2007, Rome, Italy. pp.3301-3306 Communication dans un congrès hal-01987923v1
	BioCD : An efficient algorithm for self-collision and distance computation between highly articulated molecular models Vicente Ruiz de Angulo , Juan Cortés , Thierry Simeon Robotics : Science and Systems, Jun 2005, Cambridge, United States Communication dans un congrès hal-01988238v1
	Probabilistic Motion Planning for Parallel Mechanisms Juan Cortés , Thierry Simeon IEEE International Conference on Robotics and Automation (ICRA'2003), Sep 2003, Taipei, Taiwan. pp.4354-4359 Communication dans un congrès hal-01052999v1
	A Random Loop Generator for Planning the Motions of Closed Kinematic Chains using PRM Methods Juan Cortés , Thierry Simeon , Jean-Paul Laumond 2002 IEEE International Conference on Robotics and Automation (ICRA 2002), May 2002, Washington, United States. pp.2141-2146 Communication dans un congrès hal-01988698v1
	A manipulation planner for pick and place operations under continuous grasps and placements Thierry Simeon , Juan Cortés , Anis Sahbani , Jean-Paul Laumond 2002 IEEE International Conference on Robotics and Automation (ICRA 2002), May 2002, Washington, United States. pp.2022-2027 Communication dans un congrès hal-01988694v1
	A probabilistic algorithm for manipulation planning under continuous grasps and placements Anis Sahbani , Juan Cortés , Thierry Simeon IROS 2002: IEEE/RSJ International Conference on Intelligent Robots and Systems, 2002, Lausanne, Switzerland. pp.1560-1565 Communication dans un congrès hal-01988686v1
	Computer Aided Motion: Move3D within MOLOG Thierry Simeon , Jean-Paul Laumond , Carl van Geem , Juan Cortés IEEE International Conference on Robotics and Automation (ICRA 2001), May 2001, Seoul, South Korea. pp.1494-1499 Communication dans un congrès hal-01993293v1

	Exploring Molecular Energy Landscapes by Coupling the DFTB Potential with a Tree-Based Stochastic Algorithm: Investigation of the Conformational Diversity of Phthalates Valentin Milia , Nathalie Tarrat , Christophe Zanon , Juan Cortés , Mathias Rapacioli Journal of Chemical Information and Modeling, 2024, ⟨10.1021/acs.jcim.3c01981⟩ Article dans une revue hal-04517230v1
	Two-sample goodness-of-fit tests on the flat torus based on Wasserstein distance and their relevance to structural biology Javier González-Delgado , Alberto González-Sanz , Juan Cortés , Pierre Neuvial Electronic Journal of Statistics , 2023, 17 (1), pp.1547-1586. ⟨10.1214/23-EJS2135⟩ Article dans une revue hal-03369795v3
	IGLOO: An Iterative Global Exploration and Local Optimization Algorithm to Find Diverse Low-Energy Conformations of Flexible Molecules William Margerit , Antoine Charpentier , Cathy Maugis-Rabusseau , Johann Christian Schön , Nathalie Tarrat Algorithms, 2023, 16 (10), pp.476. ⟨10.3390/a16100476⟩ Article dans une revue hal-04247201v1
	WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins Javier González-Delgado , Amin Sagar , Christophe Zanon , Kresten Lindorff-Larsen , Pau Bernadó Journal of Molecular Biology, 2023, 435 (14), pp.168053. ⟨10.1016/j.jmb.2023.168053⟩ Article dans une revue hal-04056662v1
	Coordinated Multi-Robot Trajectory Tracking Control over Sampled Communication ⋆ Enrica Rossi , Marco Tognon , Luca Ballotta , Ruggero Carli , Juan Cortés Automatica, 2023, 151, pp.110941. ⟨10.1016/j.automatica.2023.110941⟩ Article dans une revue hal-04010855v1
	Multi-site-specific isotopic labeling accelerates high-resolution structural investigations of pathogenic huntingtin exon-1 Carlos Elena-Real , Annika Urbanek , Xamuel Lund , Anna Morató , Amin Sagar Structure, 2023, 31 (6), pp.644-650.e5. ⟨10.1016/j.str.2023.04.003⟩ Article dans une revue hal-04085383v1
	The structure of pathogenic huntingtin exon 1 defines the bases of its aggregation propensity Carlos A Elena-Real , Amin Sagar , Annika Urbanek , Matija Popovic , Anna Morató Nature Structural and Molecular Biology, 2023, 30 (3), pp.309 - 320. ⟨10.1038/s41594-023-00920-0⟩ Article dans une revue hal-04052774v1
	Conformational buffering underlies functional selection in intrinsically disordered protein regions Nicolás González-Foutel , Juliana Glavina , Wade Borcherds , Matías Safranchik , Susana Barrera-Vilarmau Nature Structural and Molecular Biology, 2022, 29 (8), pp.781-790. ⟨10.1038/s41594-022-00811-w⟩ Article dans une revue hal-03767337v1
	Indirect Force Control of a Cable-suspended Aerial Multi-Robot Manipulator Dario Sanalitro , Marco Tognon , A Jimenez Cano , Juan Cortés , Antonio Franchi IEEE Robotics and Automation Letters, 2022, 7 (3), pp.6726 - 6733. ⟨10.1109/LRA.2022.3176457⟩ Article dans une revue hal-03664826v1
	Precise Cable-Suspended Pick-and-Place with an Aerial Multi-robot System A E Jiménez-Cano , Dario Sanalitro , M. Tognon , A. Franchi , J. Cortés Journal of Intelligent and Robotic Systems, 2022, 105 (3), pp.68. ⟨10.1007/s10846-022-01668-3⟩ Article dans une revue hal-03748086v1
	The sequence context in poly-alanine regions: structure, function and conservation Pablo Mier , Carlos Elena-Real , Juan Cortés , Pau Bernadó , Miguel Andrade-Navarro Bioinformatics, 2022, 38 (21), pp.4851-4858. ⟨10.1093/bioinformatics/btac610⟩ Article dans une revue hal-03778766v1
	Statistical proofs of the interdependence between nearest neighbor effects on polypeptide backbone conformations Javier González-Delgado , Pau Bernadó , Pierre Neuvial , Juan Cortés Journal of Structural Biology, 2022, 214 (4), pp.107907. ⟨10.1016/j.jsb.2022.107907⟩ Article dans une revue hal-03826233v1
	Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered Mariane Gonçalves-Kulik , Pablo Mier , Kristina Kastano , Juan Cortés , Pau Bernadó Biomolecules, 2022, 12 (8), pp.1098. ⟨10.3390/biom12081098⟩ Article dans une revue hal-03767342v1
	Dehydrogenation versus deprotonation of disaccharide molecules in vacuum: a thorough theoretical investigation Bohdan Andriyevsky , Nathalie Tarrat , Juan Cortés , Johann Christian Schön Royal Society Open Science, 2022, 9 (10), ⟨10.1098/rsos.220436⟩ Article dans une revue hal-03817247v1
	MoMA-LoopSampler: A web server to exhaustively sample protein loop conformations Amélie Barozet , Kevin Molloy , Marc Vaisset , Christophe Zanon , Pierre Fauret Bioinformatics, 2022, 38 (2), pp.552-553. ⟨10.1093/bioinformatics/btab584⟩ Article dans une revue hal-03326493v1
	Molecular flexibility in computational protein design: an algorithmic perspective Younes Bouchiba , Juan Cortés , Thomas Schiex , Sophie Barbe Protein Engineering, Design and Selection, 2021, 34, pp.gzab011. ⟨10.1093/protein/gzab011⟩ Article dans une revue hal-03221838v1
	Current approaches to flexible loop modeling Amélie Barozet , Pablo Chacón , Juan Cortés Current Research in Structural Biology, 2021, 3, pp.187-191. ⟨10.1016/j.crstbi.2021.07.002⟩ Article dans une revue hal-03318652v1
	The diversity of molecular interactions involving intrinsically disordered proteins: A molecular modeling perspective Ilinka Clerc , Amin Sagar , Alessandro Barducci , Nathalie Sibille , Pau Bernadó Computational and Structural Biotechnology Journal, 2021, 19, pp.3817-3828. ⟨10.1016/j.csbj.2021.06.031⟩ Article dans une revue hal-03281983v1
	Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods Amélie Barozet , Marc Bianciotto , Marc Vaisset , Thierry Simeon , Hervé Minoux Proteins - Structure, Function and Bioinformatics, 2021, 89 (2), pp.218-231. ⟨10.1002/prot.26008⟩ Article dans une revue hal-02947409v1
	Interdomain linkers tailor the stability of immunoglobulin repeats in polyproteins Tanuja Joshi , Surbhi Garg , Alejandro Estaña , Juan Cortés , Pau Bernadó Biochemical and Biophysical Research Communications, 2021, 550, pp.43-48. ⟨10.1016/j.bbrc.2021.02.114⟩ Article dans une revue hal-03161535v1
	A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal Angeline Pelus , Gaëlle Bordes , Sophie Barbe , Younes Bouchiba , Callum Burnard Biomaterials Science, 2021, 9 (22), pp.7444-7455. ⟨10.1039/d1bm01156a⟩ Article dans une revue hal-03372120v1
	Aide à la conception Juan Cortés , Thomas Schiex Le petit illustré, regards croisés de chercheur.es, 2020 Article dans une revue hal-03436420v1
	Predicting secondary structure propensities in IDPs using simple statistics from three-residue fragments Alejandro N Estaña , Amélie Barozet , Assia Mouhand , Marc Vaisset , Christophe Zanon Journal of Molecular Biology, 2020, 342 (19), pp.5447-5459. ⟨10.1016/j.jmb.2020.07.026⟩ Article dans une revue hal-02920302v1
	Evidence of the reduced abundance of proline cis conformation in protein poly-proline tracts Annika N Urbanek , Matija Popovic , Carlos A Elena-Real , Anna Morató , Alejandro N Estaña Journal of the American Chemical Society, 2020, 142 (17), pp.7976-7986. ⟨10.1021/jacs.0c02263⟩ Article dans une revue hal-02545935v1
	A Reinforcement-Learning-Based Approach to Enhance Exhaustive Protein Loop Sampling Amélie Barozet , Kevin Molloy , Marc Vaisset , Thierry Simeon , Juan Cortés Bioinformatics, 2020, 36 (4), pp.1099-1106. ⟨10.1093/bioinformatics/btz684⟩ Article dans une revue hal-02289207v1
	Full-pose Manipulation Control of a Cable-suspended load with Multiple UAVs under Uncertainties Dario Sanalitro , Heitor J Savino , Marco Tognon , Juan Cortés , Antonio Franchi IEEE Robotics and Automation Letters, 2020, 5 (2), pp.2185 - 2191. ⟨10.1109/LRA.2020.2969930⟩ Article dans une revue hal-02460422v1
	Flanking regions determine the structure of the poly-glutamine homo- repeat in huntingtin through mechanisms common among glutamine-rich human proteins Annika N Urbanek , Matija Popovic , Anna Morató , Alejandro N Estaña , Carlos A Elena-Real Structure, 2020, 28 (7), pp.733-746.e5. ⟨10.1016/j.str.2020.04.008⟩ Article dans une revue hal-02893075v1
	Cooperative Aerial Load Transportation via Sampled Communication Enrica Rossi , Marco Tognon , Ruggero Carli , Luca Schenato , Juan Cortés IEEE Control Systems Letters, 2020, 4 (2), pp.277-282. ⟨10.1109/LCSYS.2019.2924413⟩ Article dans une revue hal-02170909v1
	Polymorphism in carbohydrate self-assembly at surfaces: STM imaging and theoretical modelling of trehalose on Cu(100) Sabine Abb , Nathalie Tarrat , Juan Cortés , Bohdan Andriyevsky , Ludger Harnau RSC Advances, 2019, 9 (61), pp.35813-35819. ⟨10.1039/C9RA06764G⟩ Article dans une revue hal-02370437v1
	Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database Alejandro N Estaña , Nathalie Sibille , Elise Delaforge , Marc Vaisset , Juan Cortés Structure, 2019, 27 (5), pp.381-391.e2. ⟨10.1016/j.str.2018.10.016⟩ Article dans une revue hal-01954977v1
	A Truly Redundant Aerial Manipulator System with Application to Push-and-Slide Inspection in Industrial Plants Marco Tognon , Hermes A Tello Chávez , Enrico Gasparin , Quentin Sablé , Davide Bicego IEEE Robotics and Automation Letters, 2019, 4 (2), pp.1846 - 1851. ⟨10.1109/LRA.2019.2895880⟩ Article dans une revue hal-01910343v2
	Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems Antoine Charpentier , David Mignon , Sophie Barbe , Juan Cortés , Thomas Schiex Journal of Chemical Information and Modeling, 2019, 59 (1), pp.127-136. ⟨10.1021/acs.jcim.8b00510⟩ Article dans une revue hal-01943616v1
	Carbohydrate Self-Assembly at Surfaces: STM Imaging of Sucrose Conformation and Ordering on Cu(100) Sabine Abb , Nathalie Tarrat , Juan Cortés , Bohdan Andriyevsky , Ludger Harnau Angewandte Chemie International Edition, 2019, 58 (25), pp.8336-8340. ⟨10.1002/anie.201901340⟩ Article dans une revue hal-02146428v1
	Investigating the Formation of Structural Elements in Proteins Using Local Sequence-Dependent Information and a Heuristic Search Algorithm Alejandro N Estaña , Malik Ghallab , Pau Bernadó , Juan Cortés Molecules, 2019, 24 (6), pp.1150. ⟨10.3390/molecules24061150⟩ Article dans une revue hal-02080026v1
	Simultaneous System Design and Path Planning: A Sampling-based Algorithm. Kevin Molloy , Laurent Denarie , Marc Vaisset , Thierry Simeon , Juan Cortés The International Journal of Robotics Research, 2019, 38 (2-3), pp.375-387. ⟨10.1177/0278364918783054⟩ Article dans une revue hal-01834414v1
	The AEROARMS Project: Aerial Robots with Advanced Manipulation Capabilities for Inspection and Maintenance Anibal Ollero , Guillermo Heredia , Antonio Franchi , Gianluca Antonelli , Konstantin Kondak IEEE Robotics and Automation Magazine, 2018, 25 (4), pp.12-23. ⟨10.1109/MRA.2018.2852789⟩ Article dans une revue hal-01870107v1
	Segmenting Proteins into Tripeptides to Enhance Conformational Sampling with Monte Carlo Methods Laurent Denarie , Ibrahim Al Bluwi , Marc Vaisset , Thierry Simeon , Juan Cortés Molecules, 2018, 23 (2), pp.373. ⟨10.3390/molecules23020373⟩ Article dans une revue hal-01708710v1
	Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules Alejandro N Estaña , Kevin Molloy , Marc Vaisset , Nathalie Sibille , Thierry Simeon Parallel Computing, 2018, 77, pp.84-100. ⟨10.1016/j.parco.2018.06.005⟩ Article dans une revue hal-01823694v2
	Conformational changes in antibody Fab fragments upon binding and their consequences on the performance of docking algorithms Amélie Barozet , Marc Bianciotto , Thierry Simeon , Hervé Minoux , Juan Cortés Immunology Letters, 2018, 200, pp.5-15. ⟨10.1016/j.imlet.2018.06.002⟩ Article dans une revue hal-01823695v1
	Exhaustive exploration of the conformational landscape of small cyclic peptides using a robotics approach Maud Jusot , Dirk Stratmann , Marc Vaisset , Jacques Chomilier , Juan Cortés Journal of Chemical Information and Modeling, 2018, 58 (11), pp.2355-2368. ⟨10.1021/acs.jcim.8b00375⟩ Article dans une revue hal-01893751v1
	Prediction and clarification of structures of (bio)molecules on surfaces-a review C. Schön, , C. Oligschleger , Juan Cortés Zeitschrift fur Naturforschung B, 2018, 71 (5), ⟨10.1515/znb-2015-0222⟩ Article dans une revue hal-01295377v1
	Control-Aware Motion Planning for Task-Constrained Aerial Manipulation Marco Tognon , Elisabetta Cataldi , Hermes Amadeus A Tello Chavez , Gianluca Antonelli , Juan Cortés IEEE Robotics and Automation Letters, 2018, 3 (3), pp.2478-2484. ⟨10.1109/LRA.2018.2803206⟩ Article dans une revue hal-01704127v1
	Structural Characterization of Highly Flexible Proteins by Small-Angle Scattering. Tiago N Cordeiro , Fatima Herranz-Trillo , Annika N Urbanek , Alejandro N Estaña , Juan Cortés Advances in Experimental Medicine and Biology, 2017, pp.PP.107-129. ⟨10.1007/978-981-10-6038-0_7⟩ Article dans une revue hal-01664316v1
	Small-angle scattering studies of intrinsically disordered proteins and their complexes Tiago N Cordeiro , Fatima Herranz-Trillo , Annika N Urbanek , Alejandro N Estaña , Juan Cortés Current Opinion in Structural Biology, 2017, 42, pp.15 - 23. ⟨10.1016/j.sbi.2016.10.011⟩ Article dans une revue hal-01391541v1
	Optimal Path Planning in Complex Cost Spaces With Sampling-Based Algorithms Didier Devaurs , Thierry Simeon , Juan Cortés IEEE Transactions on Automation Science and Engineering, 2016, 13 (2), pp.415-424. ⟨10.1109/TASE.2015.2487881⟩ Article dans une revue hal-01231482v1
	Foreword on special issue on robotics methods for structural and dynamic modeling of molecular systems Lydia Tapia , Juan Cortés , Amarda Shehu , Jinalin Chen Robotica, 2016, 34 (08), pp.1677-1678. ⟨10.1017/S0263574716000370⟩ Article dans une revue hal-01942773v1
	Characterizing Energy Landscapes of Peptides using a Combination of Stochastic Algorithms Didier Devaurs , Kevin Molloy , Marc Vaisset , Amarda Shehu , Thierry Simeon IEEE Transactions on NanoBioscience, 2015, 14 (5), pp. 545-552 Article dans une revue hal-01143833v1
	Parallelizing RRT on large-scale distributed-memory architectures Didier Devaurs , Thierry Simeon , Juan Cortés IEEE Transactions on Robotics, 2013, 29 (2), pp. 571-579. ⟨10.1109/TRO.2013.2239571⟩ Article dans une revue hal-00861579v1
	Modeling protein conformational transitions by a combination of coarse-grained normal mode analysis and robotics-inspired methods Ibrahim Al Bluwi , Marc Vaisset , Thierry Simeon , Juan Cortés BMC Structural Biology, 2013, 13 (Suppl 1), pp.S2. ⟨10.1186/1472-6807-13-S1-S2⟩ Article dans une revue hal-01980925v1
	MoMA-LigPath: A web server to simulate protein-ligand unbinding Didier Devaurs , Léa Bouard , Marc Vaisset , Christophe Zanon , Ibrahim Al Bluwi Nucleic Acids Research, 2013, vol. 41, pp. 297-302. ⟨10.1093/nar/gkt380⟩ Article dans une revue hal-00843321v1
	Rigid-CLL: Avoiding constant-distance computations in cell linked-lists algorithms V Ruiz de Angulo , Juan Cortés , J. M Porta Journal of Computational Chemistry, 2012, 33 (3), pp.294-300. ⟨10.1002/jcc.21974⟩ Article dans une revue hal-02573424v1
	Motion planning algorithms for molecular simulations: A survey Ibrahim Al Bluwi , Thierry Simeon , Juan Cortés Computer Science Review, 2012, 6 (4), pp.125-143 Article dans une revue hal-01982596v1
	Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH11 xylanase Gabriel Paës , Juan Cortés , Thierry Simeon , Michael O'Donohue , Vinh Tran Computational and Structural Biotechnology Journal, 2012, 1 (2), pp.e201207001. ⟨10.5936/csbj.201207001⟩ Article dans une revue hal-01267831v1
	A randomized tree construction algorithm to explore energy landscapes Léonard Jaillet , Francesc J Corcho , Juan J Pérez , Juan Cortés Journal of Computational Chemistry, 2011, 32 (16), pp.3464 - 3474. ⟨10.1002/jcc.21931⟩ Article dans une revue hal-01894030v1
	A mixed molecular modeling-robotics approach to investigate lipase large molecular motions Sophie Barbe , Juan Cortés , Thierry Simeon , Pierre Monsan , Magali Siméon Proteins - Structure, Function and Bioinformatics, 2011, 79 (8), pp.2517-2529. ⟨10.1002/prot.23075⟩ Article dans une revue hal-02651861v2
	Encoding Molecular Motions in Voxel Maps Juan Cortés , Sophie Barbe , Monique Erard , Thierry Simeon IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2011, 8 (2), pp.557-563. ⟨10.1109/TCBB.2010.23⟩ Article dans une revue hal-02652128v2
	Enhancing systematic protein-protein docking methods using ray casting: Application to ATTRACT Yi Li , Juan Cortés , Thierry Simeon Proteins - Structure, Function and Bioinformatics, 2011, 79 (11), pp.3037-3049. ⟨10.1002/prot.23127⟩ Article dans une revue hal-01982609v1
	Sampling-Based Path Planning on Configuration-Space Costmaps Léonard Jaillet , Juan Cortés , Thierry Simeon IEEE Transactions on Robotics, 2010, 26 (4), pp.635-646 Article dans une revue hal-01986202v1
	Simulating ligand-induced conformational changes in proteins using a mechanical disassembly method Juan Cortés , Duc Thanh Le , Romain Iehl , Thierry Simeon Physical Chemistry Chemical Physics, 2010, 12 (29), pp.8268 Article dans une revue hal-01986237v1
	Control of Lipase Enantioselectivity by Engineering the Substrate Binding Site and Access Channel Vincent Lafaquière , Sophie Barbe , Sophie Puech-Guenot , David Guieysse , Juan Cortés ChemBioChem, 2009, 10 (17), pp.2760-2771. ⟨10.1002/cbic.200900439⟩ Article dans une revue hal-01986285v1
	A Structure-Controlled Investigation of Lipase Enantioselectivity by a Path-Planning Approach David Guieysse , Juan Cortés , Sophie Puech-Guenot , Sophie Barbe , Vincent Lafaquière ChemBioChem, 2008, 9 (8), pp.1308-1317. ⟨10.1002/cbic.200700548⟩ Article dans une revue hal-01986375v1
	Disassembly Path Planning for Complex Articulated Objects Juan Cortés , Léonard Jaillet , Thierry Simeon IEEE Transactions on Robotics, 2008, 24 (2), pp.475-481 Article dans une revue hal-01987955v1
	An NMA-guided path planning approach for computing large-amplitude conformational changes in proteins Svetlana Kirillova , Juan Cortés , Alin Stefaniu , Thierry Simeon Proteins - Structure, Function and Bioinformatics, 2008, 70 (1), pp.131-143. ⟨10.1002/prot.21570⟩ Article dans une revue hal-01987938v1
	A path planning approach for computing large-amplitude motions of flexible molecules Juan Cortés , Thierry Simeon , Vicente Ruiz de Angulo , David Guieysse , Magali Remaud Simeon Bioinformatics, 2005, 21 (Suppl 1), pp.i116-i125. ⟨10.1093/bioinformatics/bti1017⟩ Article dans une revue hal-01988625v1
	Geometric algorithms for the conformational analysis of long protein loops Juan Cortés , Thierry Simeon , Magali Remaud Simeon , V. Tran Journal of Computational Chemistry, 2004, 25 (7), pp.956-967. ⟨10.1002/jcc.20021⟩ Article dans une revue hal-01987902v1
	Manipulation Planning with Probabilistic Roadmaps Thierry Simeon , Jean-Paul Laumond , Juan Cortés , Anis Sahbani The International Journal of Robotics Research, 2004, 23 (7-8), pp.729-746 Article dans une revue hal-01987879v1

	Sampling-Based Tree Planners (RRT, EST, and Variations) Juan Cortés , Thierry Simeon Encyclopedia of Robotics, Springer Berlin Heidelberg, pp.1-9, 2021, ⟨10.1007/978-3-642-41610-1_170-1⟩ Chapitre d'ouvrage hal-03165054v1
	Combining System Design and Path Planning Laurent Denarie , Kevin Molloy , Marc Vaisset , Thierry Simeon , Juan Cortés Goldberg K., Abbeel P., Bekris K., Miller L. Algorithmic Foundations of Robotics XII, 13, , pp.112-127, 2020, Springer Proceedings in Advanced Robotics, ⟨10.1007/978-3-030-43089-4_8⟩ Chapitre d'ouvrage hal-02571707v1
	Combining Assembly Planning and Geometric Task Planning Raphaël Lallement , Juan Cortés , Mamoun Gharbi , Alexandre Boeuf , Rachid Alami Anibal Ollero; Bruno Siciliano. Aerial Robotic Manipulation. Research, Development and Applications, 129, Springer, pp.299-316, 2019, Springer Tracts in Advanced Robotics, 978-3-030-12945-3. ⟨10.1007/978-3-030-12945-3_22⟩ Chapitre d'ouvrage hal-02191294v1
	Motion Planning Alexandre Boeuf , Juan Cortés , Thierry Simeon Aerial Robotic Manipulation, pp.317-332, 2019, 978-3-030-12945-3. ⟨10.1007/978-3-030-12945-3_23⟩ Chapitre d'ouvrage hal-02191300v1
	Sampling-Based Motion Planning under Kinematic Loop-Closure Constraints Juan Cortés , Thierry Simeon Algorithmic Foundations of Robotics VI, pp.75-90, 2005 Chapitre d'ouvrage hal-01987883v1
	A General Manipulation Task Planner Thierry Simeon , Juan Cortés , Anis Sahbani , Jean-Paul Laumond Algorithmic Foundations of Robotics V. Springer Tracts in Advanced Robotics., pp.311-327, 2004 Chapitre d'ouvrage hal-01988619v1

	Learned Sensitivity Metrics for Robust and Accurate Motion Planning Simon Wasiela , Marco Cognetti , Paolo Robuffo Giordano , Juan Cortés , Thierry Simeon 2023 Pré-publication, Document de travail hal-04027078v1
	Post-clustering Inference under Dependency Javier González-Delgado , Juan Cortés , Pierre Neuvial 2023 Pré-publication, Document de travail hal-04250364v1

	Motion planning algorithms for general closed-chain mechanisms Juan Cortés Automatique / Robotique. Institut National Polytechnique de Toulouse - INPT, 2003. Français. ⟨NNT : ⟩ Thèse tel-00011002v1

	Algorithmics of motion: From robotics, through structural biology, toward atomic-scale CAD Juan Cortés Robotics [cs.RO]. Universite Toulouse III Paul Sabatier, 2014 HDR tel-01110545v1

Juan Cortés

Domaines de recherche

Publications

A Sensitivity-Aware Motion Planner (SAMP) to Generate Intrinsically-Robust Trajectories

Computational Design of miniprotein binders

Computational Design of miniprotein binders

A case study of automated dual-arm manipulation in industrial applications

Multi-Robot Path Planning with Maintenance of Generalized Connectivity

Combining System Design and Path Planning

A Reinforcement Learning Approach to Protein Loop Modeling

Enhancing sampling-based kinodynamic motion planning for quadrotors

Efficient sampling-based approaches to optimal path planning in complex cost spaces

Sampling-based methods for a full characterization of energy landscapes of small peptides

A multi-tree extension of the Transition-based RRT: Application to ordering-and-pathfinding problems in continuous cost spaces

Planning agile motions for quadrotors in constrained environments

A motion planning approach to 6-D manipulation with aerial towed-cable systems

Enhancing the Transition-based RRT to deal with complex cost spaces

Motion planning for 6-D manipulation with aerial towed-cable systems

A multi-tree approach to compute transition paths on energy landscapes

Coarse-grained elastic networks, normal mode analysis and robotics-inspired methods for modeling protein conformational transitions

Costmap planning in high dimensional configuration spaces

Finding enveloping grasps by matching continuous surfaces

Parallelizing RRT on distributed-memory architectures

Planning human-aware motions using a sampling-based costmap planner

Planning pick-and-place tasks with two-hand regrasping

Coupling robotics and molecular modelling techniques to understand putative functional motion of the thumb-loop in GH-11 xylanase from Thermobacillus xylanilyticus

Thumb-loops up for catalysis: a structure/function investigation of a functional loop movement in a GH-11 xylanase

Encoding molecular motions in voxels maps

Roadmap composition for multi-arm systems path planning

A path planning approach to (dis)assembly sequencing

Transition-based RRT for path planning in continuous cost spaces

A sampling-based path planner for dual-arm manipulation

Disassembly path planning for complex articulated objects

Disassembly path planning for objects with articulated parts.

Molecular Disassembly With Rrt-Like Algorithms

BioCD : An efficient algorithm for self-collision and distance computation between highly articulated molecular models

Probabilistic Motion Planning for Parallel Mechanisms

A Random Loop Generator for Planning the Motions of Closed Kinematic Chains using PRM Methods

A manipulation planner for pick and place operations under continuous grasps and placements

A probabilistic algorithm for manipulation planning under continuous grasps and placements

Computer Aided Motion: Move3D within MOLOG

Exploring Molecular Energy Landscapes by Coupling the DFTB Potential with a Tree-Based Stochastic Algorithm: Investigation of the Conformational Diversity of Phthalates

Two-sample goodness-of-fit tests on the flat torus based on Wasserstein distance and their relevance to structural biology

IGLOO: An Iterative Global Exploration and Local Optimization Algorithm to Find Diverse Low-Energy Conformations of Flexible Molecules

WASCO: A Wasserstein-based Statistical Tool to Compare Conformational Ensembles of Intrinsically Disordered Proteins

Coordinated Multi-Robot Trajectory Tracking Control over Sampled Communication ⋆

Multi-site-specific isotopic labeling accelerates high-resolution structural investigations of pathogenic huntingtin exon-1

The structure of pathogenic huntingtin exon 1 defines the bases of its aggregation propensity

Conformational buffering underlies functional selection in intrinsically disordered protein regions

Indirect Force Control of a Cable-suspended Aerial Multi-Robot Manipulator

Precise Cable-Suspended Pick-and-Place with an Aerial Multi-robot System

The sequence context in poly-alanine regions: structure, function and conservation

Statistical proofs of the interdependence between nearest neighbor effects on polypeptide backbone conformations

Low Complexity Induces Structure in Protein Regions Predicted as Intrinsically Disordered

Dehydrogenation versus deprotonation of disaccharide molecules in vacuum: a thorough theoretical investigation

MoMA-LoopSampler: A web server to exhaustively sample protein loop conformations

Molecular flexibility in computational protein design: an algorithmic perspective

Current approaches to flexible loop modeling

The diversity of molecular interactions involving intrinsically disordered proteins: A molecular modeling perspective

Protein loops with multiple meta-stable conformations: a challenge for sampling and scoring methods

Interdomain linkers tailor the stability of immunoglobulin repeats in polyproteins

A tripartite carbohydrate-binding module to functionalize cellulose nanocrystal

Aide à la conception

Predicting secondary structure propensities in IDPs using simple statistics from three-residue fragments

Evidence of the reduced abundance of proline cis conformation in protein poly-proline tracts

A Reinforcement-Learning-Based Approach to Enhance Exhaustive Protein Loop Sampling

Full-pose Manipulation Control of a Cable-suspended load with Multiple UAVs under Uncertainties

Flanking regions determine the structure of the poly-glutamine homo- repeat in huntingtin through mechanisms common among glutamine-rich human proteins

Cooperative Aerial Load Transportation via Sampled Communication

Polymorphism in carbohydrate self-assembly at surfaces: STM imaging and theoretical modelling of trehalose on Cu(100)

Realistic Ensemble Models of Intrinsically Disordered Proteins Using a Structure-Encoding Coil Database

A Truly Redundant Aerial Manipulator System with Application to Push-and-Slide Inspection in Industrial Plants

Variable Neighborhood Search with Cost Function Networks To Solve Large Computational Protein Design Problems

Carbohydrate Self-Assembly at Surfaces: STM Imaging of Sucrose Conformation and Ordering on Cu(100)

Investigating the Formation of Structural Elements in Proteins Using Local Sequence-Dependent Information and a Heuristic Search Algorithm

Simultaneous System Design and Path Planning: A Sampling-based Algorithm.

The AEROARMS Project: Aerial Robots with Advanced Manipulation Capabilities for Inspection and Maintenance

Segmenting Proteins into Tripeptides to Enhance Conformational Sampling with Monte Carlo Methods

Hybrid parallelization of a multi-tree path search algorithm: Application to highly-flexible biomolecules

Conformational changes in antibody Fab fragments upon binding and their consequences on the performance of docking algorithms