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Detecting sex-linked genes using genotyped individuals sampled in natural populations

 Jos Käfer , Nicolas Lartillot , Gabriel a B Marais , Franck Picard
Genetics, 2021, 218 (2), ⟨10.1093/genetics/iyab053⟩
Article dans une revue hal-03250679v1

Patterns of molecular evolution in dioecious and non-dioecious Silene

 J. Kafer , M. Talianova , T. Bigot , E. Michu , L. Guéguen , et al.
Journal of Evolutionary Biology, 2013, 26, pp.335--46. ⟨10.1111/jeb.12052⟩
Article dans une revue hal-02281842v1
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SEX-DETector: a probabilistic approach to study sex chromosomes in non-model organisms

 A. Muyle , Jos Käfer , N. Zemp , S. Mousset , Franck Picard , et al.
Genome Biology and Evolution, 2016, 8, pp.2530-2543. ⟨10.1093/gbe/evw172⟩
Article dans une revue hal-02053627v1
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How sex chromosomes get trapped into nonrecombination

 Jos Käfer
PLoS Biology, 2022, 20 (7), pp.e3001718. ⟨10.1371/journal.pbio.3001718⟩
Article dans une revue hal-03728145v1
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A derived ZW chromosome system in Amborella trichopoda, representing the sister lineage to all other extant flowering plants

 Jos Käfer , Adam Bewick , Amélie Andres‐robin , Garance Lapetoule , Alex Harkess , et al.
New Phytologist, 2022, 233, pp.1636-1642. ⟨10.1111/nph.17662⟩
Article dans une revue hal-03370272v1
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Progress and Prospects in Gender Visibility at SMBE Annual Meetings

 Jos Käfer , Andrea Betancourt , Avelyne S. Villain , Marie Fernandez , Clémentine Vignal , et al.
Genome Biology and Evolution, 2018, 10 (3), pp.901-908. ⟨10.1093/gbe/evy056⟩
Article dans une revue hal-02310560v1

Dioecy is associated with higher diversification rates in flowering plants

 Jos Käfer , Hugo J de Boer , Sylvain Mousset , Anneleen Kool , Mathilde Dufaÿ , et al.
Journal of Evolutionary Biology, 2014, 27, pp.1478-1490. ⟨10.1111/jeb.12385⟩
Article dans une revue hal-01110844v1

Standard Sister Clade Comparison Fails when Testing Derived Character States

 Jos Käfer , S. Mousset
Systematic Biology, 2014, 63 (4), pp.601-609. ⟨10.1093/sysbio/syu024⟩
Article dans une revue hal-02046796v1
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Identifying new sex-linked genes through BAC sequencing in the dioecious plant Silene latifolia

 Nicolas Blavet , Hana Blavet , Aline Muyle , Jos Käfer , Radim Cegan , et al.
BMC Genomics, 2015, 16, pp.546. ⟨10.1186/s12864-015-1698-7⟩
Article dans une revue hal-02637603v1
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Topological and geometrical disorder correlate robustly in two-dimensional foams

 Catherine Quilliet , Shirin Ataei Talebi , David Rabaud , Jos Kaefer , Simon Cox , et al.
2008
Pré-publication, Document de travail hal-00259402v1
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Labile sex expression in angiosperm species with sex chromosomes

 Jos Käfer , Marcos Méndez , Sylvain Mousset
Philosophical Transactions of the Royal Society B: Biological Sciences, 2022, 377 (1850), ⟨10.1098/rstb.2021.0216⟩
Article dans une revue hal-03624906v1

On the rarity of dioecy in flowering plants

 Jos Käfer , Gabriel Marais , Jr. Pannell
Molecular Ecology, 2017, 26, pp.1225-1241. ⟨10.1111/mec.14020⟩
Article dans une revue hal-01943810v1

Multiple Nuclear Gene Phylogenetic Analysis of the Evolution of Dioecy and Sex Chromosomes in the Genus Silene

 Gabriel Marais , A. Forrest , E. Kamau , Jos Käfer , Vincent Daubin , et al.
PLoS ONE, 2011, 6, pp.e21915. ⟨10.1371/journal.pone.0021915⟩
Article dans une revue hal-00698036v1
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Back to the trees: Identifying plants with Human Intelligence

 Simon Castellan , Jos Käfer , Eric Tannier
LIMITS 2023 - Ninth Workshop on Computing within Limits, LIMITS, pp.1-11, 2023, ⟨10.21428/bf6fb269.265c52ce⟩
Proceedings/Recueil des communications hal-04121511v1
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Pulled Diversification Rates, Lineages-Through-Time Plots, and Modern Macroevolutionary Modeling

 Andrew J. Helmstetter , Sylvain Glémin , Jos Käfer , Rosana Zenil-Ferguson , Hervé Sauquet , et al.
Systematic Biology, 2022, 71 (3), pp.758-773. ⟨10.1093/sysbio/syab083⟩
Article dans une revue hal-03629564v1
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Plant genera Cannabis and Humulus share the same pair of well-differentiated sex chromosomes

 Djivan Prentout , Natasa Stajner , Andreja Cerenak , Theo Tricou , Celine Brochier-Armanet , et al.
New Phytologist, 2021, 231 (4), pp.1599-1611. ⟨10.1111/nph.17456⟩
Article dans une revue hal-03254304v1
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The role of fluctuations and stress on the effective viscosity of cell aggregates.

 Philippe Marmottant , Abbas Mgharbel , Jos Käfer , Benjamin Audren , Jean-Paul Rieu , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (41), pp.17271-5. ⟨10.1073/pnas.0902085106⟩
Article dans une revue inserm-00524596v1
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Opposing effects of plant traits on diversification

 B. Anderson , J. Pannell , S. Billiard , C. Burgarella , H. de Boer , et al.
iScience, 2023, 26 (4), pp.106362. ⟨10.1016/j.isci.2023.106362⟩
Article dans une revue hal-04064257v1

An angiosperm-wide analysis of the gynodioecy-dioecy pathway.

 Mathilde Dufaÿ , P. Champelovier , J Käfer , Jean-Pierre Henry , Sylvain Mousset , et al.
Annals of Botany, 2014, 114, pp.539-548. ⟨10.1093/aob/mcu134⟩
Article dans une revue hal-01110834v1

Statistical Mechanics of Two-Dimensional Shuffled Foams: Prediction of the Correlation between Geometry and Topology

 M. Durand , Jos Käfer , C. Quilliet , S. Cox , S. Ataei-Talebi , et al.
Physical Review Letters, 2011, 107, pp.1-5
Article dans une revue hal-00698449v1
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An efficient RNA-seq-based segregation analysis identifies the sex chromosomes of Cannabis sativa

 Djivan Prentout , Olga Razumova , Benedicte Rhone , Hélène Badouin , Hélène Henri , et al.
Genome Research, 2020, 30 (2), pp.164-172. ⟨10.1101/gr.251207.119⟩
Article dans une revue hal-02496865v1
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Detecting sex-linked genes using genotyped individuals sampled in natural populations

 Jos Käfer , Nicolas Lartillot , Gabriel Marais , Franck Picard
2020
Pré-publication, Document de travail hal-02490340v1
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Single cells spreading on a protein lattice adopt an energy minimizing shape

 Benoit Vianay , Jos Käfer , Emmanuelle Planus , Marc R. Block , François Graner , et al.
Physical Review Letters, 2010, 105 (12), pp.128101. ⟨10.1103/PhysRevLett.105.128101⟩
Article dans une revue inserm-00529787v1
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Trait-dependent diversification in angiosperms: Patterns, models and data

 Andrew J. Helmstetter , Rosana Zenil-Ferguson , Hervé Sauquet , Sarah P Otto , Marcos Méndez , et al.
Ecology Letters, 2023, 26 (4), pp.640-657. ⟨10.1111/ele.14170⟩
Article dans une revue hal-04013691v1

Statistical mechanics of two-dimensional shuffled foams: Geometry-topology correlation in small or large disorder limits

 M. Durand , Andrew M. Kraynik , F. Van Swol , Jos Käfer , C. Quilliet , et al.
Physical Review E , 2014, 89, pp.062309. ⟨10.1103/PhysRevE.89.062309⟩
Article dans une revue hal-02071546v1

Homme/femme, mâle/femelle : la détermination du sexe dans l’espèce humaine et le reste du vivant

 Gabriel Marais , Jos Käfer
Sexe & genre: De la biologie à la sociologie, 2019
Chapitre d'ouvrage hal-02348086v1
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From cells to tissues: physical modelling of the collective behaviour of embryonic cells

 Jos Käfer
Biological Physics [physics.bio-ph]. Université Joseph-Fourier - Grenoble I, 2008. English. ⟨NNT : ⟩
Thèse tel-00346418v1
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Male differentiation in the marine Copepod Oithona nana reveals the development of a new nervous ganglion and Lin12-Notch-repeat protein-associated proteolysis

 Kevin Sugier , Romuald Laso-Jadart , Benoît Vacherie , Jos Käfer , Laurie Bertrand , et al.
Biology, 2021, 10 (7), pp.657. ⟨10.3390/biology10070657⟩
Article dans une revue hal-03286235v1
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The wild grape genome sequence provides insights into the transition from dioecy to hermaphroditism during grape domestication

 Hélène E Badouin , Amandine Velt , François Gindraud , Timothée Flutre , Vincent Dumas , et al.
Genome Biology, 2020, 21 (1), pp.223. ⟨10.1186/s13059-020-02131-y⟩
Article dans une revue hal-02946414v1
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