Jordi Estellé i Fabrellas, DVM, PhD

Paola Lopez-Colom, Jordi Estellé, Jordi Bonet, Jaume Coma, Susana Martín-Orúe. Applicability of an unmedicated feeding program aimed to reduce the use of antimicrobials in nursery piglets: impact on performance and fecal microbiota. Animals, MDPI, 2020, 10 (2), ⟨10.3390/ani10020242⟩. ⟨hal-02625962⟩

Jordi Estellé, Miguel Perez-Encisco. Special issue on livestock metagenomics. Journal of Animal Breeding and Genetics, Wiley, 2020, 137 (1), pp.3-3. ⟨10.1111/jbg.12460⟩. ⟨hal-02620468⟩

David Pérez-Pascual, Jordi Estellé, Gilbert Dutto, Charles Rodde, Jean-François Bernardet, et al.. Growth Performance and Adaptability of European Sea Bass (Dicentrarchus labrax) Gut Microbiota to Alternative Diets Free of Fish Products. Microorganisms, MDPI, 2020, 8 (9), pp.1346. ⟨10.3390/microorganisms8091346⟩. ⟨hal-02964210⟩

Francesca Romana Massacci, El Mostafa Berri, Gaetan Lemonnier, Elodie Guettier, Fany Blanc, et al.. Late weaning is associated with increased microbial diversity and Faecalibacterium prausnitzii abundance in the fecal microbiota of piglets. Animal Microbiome, 2020, 2 (1), pp.1-12. ⟨10.1186/s42523-020-0020-4⟩. ⟨hal-02620309⟩

Marco Moroldo, Peris Mumbi Munyaka, Jerome Lecardonnel, Gaetan Lemonnier, Eric Venturi, et al.. Integrative analysis of blood and gut microbiota data suggests a non-alcoholic fatty liver disease (NAFLD)-related disorder in French SLAdd minipigs. Scientific Reports, Nature Publishing Group, 2020, 10 (1), 13 p. ⟨10.1038/s41598-019-57127-x⟩. ⟨hal-02627128⟩

Marion Borey, Jordi Estellé, Aziza Caidi, Nicolas Bruneau, Jean-Luc Coville, et al.. Broilers divergently selected for digestibility differ for their digestive microbial ecosystems. PLoS ONE, Public Library of Science, 2020, 15 (5), pp.e0232418. ⟨10.1371/journal.pone.0232418⟩. ⟨hal-02964226⟩

Francesca Romana Massacci, Alessandra Morelli, Lucilla Cucco, Adrien Castinel, Roberta Ortenzi, et al.. Transport to the Slaughterhouse Affects the Salmonella Shedding and Modifies the Fecal Microbiota of Finishing Pigs. Animals, MDPI, 2020, 10 (4), pp.676. ⟨10.3390/ani10040676⟩. ⟨hal-02964221⟩

Peris Munyaka, Fany Blanc, Jordi Estellé, Gaëtan Lemonnier, Jean-Jacques Leplat, et al.. Discovery of Predictors of Mycoplasma hyopneumoniae Vaccine Response Efficiency in Pigs: 16S rRNA Gene Fecal Microbiota Analysis. Microorganisms, MDPI, 2020, 8 (8), pp.1151. ⟨10.3390/microorganisms8081151⟩. ⟨hal-02964218⟩

Junhua Li, Huanzi Zhong, Yuliaxis Ramayo-Caldas, Nicolas Terrapon, Vincent Lombard, et al.. A catalog of microbial genes from the bovine rumen unveils a specialized and diverse biomass-degrading environment. GigaScience, BioMed Central, 2020, 9 (6), pp.1-15. ⟨10.1093/gigascience/giaa057⟩. ⟨hal-02860679⟩

M. Munoz, R. Bozzi, J. García-Casco, Y. Núñez, A. Ribani, et al.. Genomic diversity, linkage disequilibrium and selection signatures in European local pig breeds assessed with a high density SNP chip. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-49830-6⟩. ⟨hal-02623491⟩

Peris M. Munyaka, Arun Kommadath, Janelle Fouhse, Jamie Wilkinson, Natalie Diether, et al.. Characterization of whole blood transcriptome and early-life fecal microbiota in high and low responder pigs before, and after vaccination for Mycoplasma hyopneumoniae. Vaccine, Elsevier, 2019, 37 (13), pp.1743-1755. ⟨10.1016/j.vaccine.2019.02.016⟩. ⟨hal-02624846⟩

Frederique Pitel, Fanny Calenge, Nadège Aigueperse, Jordi Estelle Fabrellas, Vincent Coustham, et al.. Rôle de l'environnement précoce dans la variabilité des phénotypes et l’adaptation des animaux d’élevage à leur milieu. INRA Productions Animales, Paris: INRA, 2019, 32 (2), pp.247-262. ⟨10.20870/productions-animales.2019.32.2.2467⟩. ⟨hal-02385561⟩

Daniel Crespo-Piazuelo, Lourdes Migura-Garcia, Jordi Estelle Fabrellas, Lourdes Criado-Mesas, Manuel Revilla, et al.. Association between the pig genome and its gut microbiota composition. Scientific Reports, Nature Publishing Group, 2019, 9 (1), ⟨10.1038/s41598-019-45066-6⟩. ⟨hal-02627862⟩

Héctor Argüello, Jordi Estellé, Finola C. Léonard, Fiona Crispie, Paul D. Cotter, et al.. Influence of the intestinal microbiota on colonization resistance to Salmonella and the shedding pattern of naturally exposed pigs. mSystems, 2019, 4 (2), ⟨10.1128/mSystems.00021-19⟩. ⟨hal-02625688⟩

Jordi Estellé. Benefits from the joint analysis of host genomes and metagenomes: Select the holobiont. Journal of Animal Breeding and Genetics, Wiley, 2019, 136 (2), pp.75-76. ⟨10.1111/jbg.12383⟩. ⟨hal-02624531⟩

Francesca Massacci, Silvia Tofani, Claudio Forte, Micol Bertocchi, Carmela Lovito, et al.. Host genotype and amoxicillin administration affect the incidence of diarrhoea and faecal microbiota of weaned piglets during a natural multiresistant ETEC infection. Journal of Animal Breeding and Genetics, Wiley, 2019, ⟨10.1111/jbg.12432⟩. ⟨hal-02618422⟩

Yuliaxis Ramayo‐caldas, Laura Zingaretti, Milka Popova, Jordi Estellé, Aurelien Bernard, et al.. Identification of rumen microbial biomarkers linked to methane emission in Holstein dairy cows. Journal of Animal Breeding and Genetics, Wiley, 2019, 137 (1), pp.49-59. ⟨10.1111/jbg.12427⟩. ⟨hal-02495627⟩

Manuel Revilla Sanchez, Nicolas Friggens, Laurent Broudiscou, Gaetan Lemonnier, Fany Blanc, et al.. Towards the quantitative characterisation of piglets’ robustness to weaning: a modelling approach. animal, Published by Elsevier (since 2021) / Cambridge University Press (until 2020), 2019, First view (11), pp.1-11. ⟨10.1017/S1751731119000843⟩. ⟨hal-02192515⟩

Riccardo Bozzi, Fabián García, Yolanda Nunez, Claudia Geraci, Alessandro Crovetti, et al.. Diversity across major and candidate genes in European local pig breeds. PLoS ONE, Public Library of Science, 2018, 13 (11), ⟨10.1371/journal.pone.0207475⟩. ⟨hal-02626931⟩

Daniel Crespo-Piazuelo, Jordi Estellé, Manuel Revilla, Lourdes Criado-Mesas, Yuliaxis Ramayo Caldas, et al.. Characterization of bacterial microbiota compositions along the intestinal tract in pigs and their interactions and functions. Scientific Reports, Nature Publishing Group, 2018, 8, ⟨10.1038/s41598-018-30932-6⟩. ⟨hal-02628673⟩

Carol Lee, Marco Moroldo, Alvaro Perdomo-Sabogal, Nuria Mach, Sylvain Marthey, et al.. Inferring the evolution of the major histocompatibility complex of wild pigs and peccaries using hybridisation DNA capture-based sequencing. Immunogenetics, Springer Verlag, 2018, 70 (6), pp.401-417. ⟨10.1007/s00251-017-1048-9⟩. ⟨hal-02629389⟩

Cécil Campagne, Stéphanie Pons, Diane Esquerre, Jordi Estelle Fabrellas, Emmanuelle Bourneuf, et al.. Transcriptome of melanoma cells from two mouse models, Tyr:NRas Q61K and Tyr:Rack1-HA, Tyr:NRas Q61K. Data in Brief, Elsevier, 2017, 14, pp.32-34. ⟨10.1016/j.dib.2017.07.006⟩. ⟨hal-01608664⟩

Tatiana Maroilley, Gaetan Lemonnier, Jerôme Lecardonnel, Diane Esquerré, Yuliaxis Ramayo Caldas, et al.. Deciphering the genetic regulation of peripheral blood transcriptome in pigs through expression genome-wide association study and allele-specific expression analysis. BMC Genomics, BioMed Central, 2017, 18 (1), ⟨10.1186/s12864-017-4354-6⟩. ⟨hal-02624041⟩

Maria Ballester, Yuliaxis Ramayo Caldas, Manuel Revilla, Jordi Corominas, Anna Castello, et al.. Integration of liver gene coexpression networks and eGWAs analyses highlighted candidate regulators implicated in lipid metabolism in pigs. Scientific Reports, Nature Publishing Group, 2017, 7, pp.1-11. ⟨10.1038/srep46539⟩. ⟨hal-01607964⟩

Liang Xiao, Jordi Estelle Fabrellas, Pia Kiilerich, Yuliaxis Ramayo Caldas, Zhongkui Xia, et al.. A reference gene catalogue of the pig gut microbiome. Nature Microbiology, Nature Publishing Group, 2016, 1, pp.1-6. ⟨10.1038/nmicrobiol.2016.161⟩. ⟨hal-01607746⟩

Pierre-François Roux, Sylvain Marthey, Anis Djari, Marco Moroldo, Diane Esquerre, et al.. Comparison of whole-genome (13X) and capture (87X) resequencing methods for SNP and genotype callings. Animal Genetics, Wiley-Blackwell, 2015, 46 (1), pp.82-86. ⟨10.1111/age.12248⟩. ⟨hal-01194013⟩

Jordi Corominas, Jorge Ap Marchesi, Anna Puig-Oliveras, Manuel Revilla, Jordi Estellé, et al.. Epigenetic regulation of the ELOVL6 gene is associated with a major QTL effect on fatty acid composition in pigs. Genetics Selection Evolution, 2015, 47 (1), pp.20. ⟨10.1186/s12711-015-0111-y⟩. ⟨hal-01293529⟩

Jacob Bak Holm, Daniel Sorobetea, Pia Kiilerich, Yuliaxis Ramayo Caldas, Jordi Estelle Fabrellas, et al.. Chronic [i]Trichuris muris[/i] infection decreases diversity of the intestinal microbiota and concomitantly increases the abundance of Lactobacilli. PLoS ONE, Public Library of Science, 2015, 10 (5), pp.1-22. ⟨10.1371/journal.pone.0125495⟩. ⟨hal-01194169⟩

Nuria Mach Casellas, Mustapha Berri, Jordi Estelle Fabrellas, Florence Levenez, Gaetan Lemonnier, et al.. Early-life establishment of the swine gut microbiome and impact on host phenotypes. Environmental Microbiology Reports, Wiley, 2015, 7 (3), pp.554-569. ⟨10.1111/1758-2229.12285⟩. ⟨hal-01168456⟩

Vincent Jacquier, Jordi Estelle Fabrellas, Barbara Schmaltz, Jerôme Lecardonnel, Marco Moroldo, et al.. Genome-wide immunity studies in the rabbit: transcriptome variations in peripheral blood mononuclear cells after in vitro stimulation by LPS or PMA-Ionomycin. BMC Genomics, BioMed Central, 2015, 16 (1), pp.1-18. ⟨10.1186/s12864-015-1218-9⟩. ⟨hal-01194059⟩

Nuria Mach Casellas, El Mostafa Berri, Diane Esquerre, Claire Chevaleyre, Gaëtan Lemonnier, et al.. Extensive expression differences along porcine small intestine evidenced by transcriptome sequencing. PLoS ONE, Public Library of Science, 2014, 9 (2), 12 p. ⟨10.1371/journal.pone.0088515⟩. ⟨hal-01193806⟩

A Fernández-Rodríguez, Jordi Estelle Fabrellas, Amandine Blin, M Muñoz, Francoise Créchet, et al.. KIT and melanoma predisposition in pigs: sequence variants and association analysis. Animal Genetics, Wiley-Blackwell, 2014, 45 (3), pp.445-448. ⟨10.1111/age.12136⟩. ⟨hal-01193820⟩

Anna Puig-Oliveras, Maria Ballester, Jordi Corominas, Manuel Revilla, Jordi Estelle Fabrellas, et al.. A co-association network analysis of the genetic determination of pig conformation, growth and fatness. PLoS ONE, Public Library of Science, 2014, 9 (12), e114862 (20 p.). ⟨10.1371/journal.pone.0114862⟩. ⟨hal-01194008⟩

Anna Puig-Oliveras, Yuliaxis Ramayo Caldas, Jordi Corominas, Jordi Estelle Fabrellas, Dafne Pérez-Montarelo, et al.. Differences in muscle transcriptome among pigs phenotypically extreme for fatty acid composition. PLoS ONE, Public Library of Science, 2014, 9 (6), ⟨10.1371/journal.pone.0099720⟩. ⟨hal-01194006⟩

Jordi Corominas, Yuliaxis Ramayo-Caldas, Anna Puig-Oliveras, Jordi Estelle Fabrellas, Anna Castello, et al.. Analysis of porcine adipose tissue transcriptome reveals differences in de novo fatty acid synthesis in pigs with divergent muscle fatty acid composition. BMC Genomics, BioMed Central, 2013, 14, ⟨10.1186/1471-2164-14-843⟩. ⟨hal-01193819⟩

Nuria Mach, Yu Gao, Gaetan Lemonnier, Jerôme Lecardonnel, Isabelle Oswald, et al.. The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers. BMC Genomics, BioMed Central, 2013, 14, pp.1-17. ⟨10.1186/1471-2164-14-894⟩. ⟨hal-01019583⟩

Thomas Derrien, Jordi Estellé, Santiago Marco Sola, David Knowles, Emanuele Raineri, et al.. Fast computation and applications of genome mappability.. PLoS ONE, Public Library of Science, 2012, 7 (1), pp.e30377. ⟨10.1371/journal.pone.0030377⟩. ⟨inserm-00664289⟩

Marie-Laure Endale Ahanda, Eric R. Fritz, Jordi Estelle, Zhi-Liang Hu, Ole Madsen, et al.. Prediction of Altered 3′- UTR miRNA-Binding Sites from RNA-Seq Data: The Swine Leukocyte Antigen Complex (SLA) as a Model Region. PLoS ONE, Public Library of Science, 2012, 7, online (11), Non paginé. ⟨10.1371/journal.pone.0048607⟩. ⟨hal-01019035⟩

Emilie Narni-Mancinelli, Baptiste Jaeger, Claire Bernat, Aurore Fenis, Sam Kung, et al.. Tuning of natural killer cell reactivity by NKp46 and Helios calibrates T cell responses.. Science, American Association for the Advancement of Science, 2012, 335 (6066), pp.344-8. ⟨10.1126/science.1215621⟩. ⟨hal-00685893⟩

Yuliaxis Ramayo-Caldas, Nuria Mach, Anna Esteve-Codina, Jordi Corominas, Anna Castelló, et al.. Liver transcriptome profile in pigs with extreme phenotypes of intramuscular fatty acid composition. BMC Genomics, BioMed Central, 2012, 13, online (october), Non paginé. ⟨10.1186/1471-2164-13-547⟩. ⟨hal-01000049⟩

Marie-Agnès Dillies, Andrea Rau, Julie Aubert, Christelle Hennequet-Antier, Marine Jeanmougin, et al.. A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis. Briefings in Bioinformatics, Oxford University Press (OUP), 2012, 14 (6), pp.671-683. ⟨10.1093/bib/bbs046⟩. ⟨hal-00782486⟩

Emmanuelle Bourneuf, Zhi-Qiang Du, Jordi Estelle, Hélène Gilbert, Francoise Créchet, et al.. Genetic and functional evaluation of MITF as a candidate gene for cutaneous melanoma predisposition in pigs. Mammalian Genome, Springer Verlag, 2011, 22 (9-10), pp.602-612. ⟨10.1007/s00335-011-9334-6⟩. ⟨hal-01019749⟩

Gloria Muñoz, Cristina Ovilo, Jordi Estellé, Luis Silió, Almudena Fernández, et al.. Association with litter size of new polymorphisms on ESR1 and ESR2 genes in a Chinese-European pig line. Genetics Selection Evolution, BioMed Central, 2007, 39 (2), pp.195-206. ⟨hal-00894587⟩

Bénédicte Lebret, Florence Garcia-Launay, Ludovic Brossard, Justine Faure, Bertrand Servin, et al.. INRA in TREASURE project. Activities and results. TREASURE congerence, Feb 2019, Ljubljana, Slovenia. ⟨hal-02790935⟩

Marco Moroldo, Peris Munyaka, Jerôme Lecardonnel, Gaetan Lemonnier, Eric Venturi, et al.. Integrative genomics analysis of blood and microbiota data suggests a NAFLD-related disorder in SLAdd minipigs. 37. International Society for Animal Genetics Conference (ISAG 2019), Jul 2019, Lleida, Spain. ⟨hal-02733937⟩

Fany Blanc, Jordi Estellé, Gaëan Lemonnier, Jean-Jacques Leplat, Yvon Billon, et al.. How to predict that some animals respond better to vaccination than others: application to vaccination against Mycoplasma hyopneumoniae in pigs?. Animal Genetics and Diseases 2019 conference, BBSRC Pirbright Institute. GBR., May 2019, Hinxton, Cambridge, United Kingdom. ⟨hal-02735430⟩

Claire Rogel Gaillard, Tatiana Maroilley, Fany Blanc, Jordi Estellé. Systems immunology approaches to decipher individual variability of immune capacity: application to the pig species. 17. International Congress of Immunology (IUIS 2019), Oct 2019, Pékin, China. ⟨hal-02733935⟩

Francesca Massacchi, Silvia Tofani, Michele Tentellini, Serenella Orsini, Carmela Lovito, et al.. Piglets infected with ETEC F4 and F18: effect of MUC4 and FUT1 genotypes. 70. Annual meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2019, Gand, Belgium. ⟨hal-02736163⟩

Yuliaxis Ramayo Caldas, Aurélien Bernard, Laura M. Zingaretti, Milka Popova, Nuria Mach Casellas, et al.. Multivariate and network analysis identified microbial biomarkers linked to methane emission. 69. Annual Meeting of the European Federation of Animal Science, European Federation of Animal Science, Aug 2018, Dubrovnik, Croatia. ⟨hal-02881487⟩

Tristan Brehelin, Sébastien Comyn, Lilian Leloutre, Jordi Estelle Fabrellas, Claire Rogel Gaillard, et al.. Impact de stratégies alimentaires médicamenteuses et d’une substance aromatique sur les performances, la santé et la diversité bactérienne fécale chez le porcelet. 50. Journées de la Recherche Porcine, Institut du Porc (IFIP). FRA., Jan 2018, Paris, France. ⟨hal-02288156⟩

Rafael Munoz Tamayo, Manuel Revilla Sanchez, Nicolas Charles Friggens, Laurent Broudiscou, Gaetan Lemonnier, et al.. Towards a quantitative characterization of robustness of piglets at weaning period: An animal growth modelling approach. Journées d'Animation Scientifique du département PHASE, Institut National de Recherche Agronomique (INRA). UAR Département Physiologie Animale et Systèmes d'Elevage (0558)., Apr 2018, Rennes, France. ⟨hal-01840967⟩

Jordi Estellé, Yuliaxis Ramayo Caldas, Nicolas Pons, Emmanuelle Le Chatelier, Edi Prifti, et al.. Construction et validation d’un premier catalogue de gènes du microbiome intestinal chez le porc. 50. Journées de la Recherche Porcine en France, 2018, NA, France. ⟨hal-02285612⟩

Tatiana Maroilley, Fany Blanc, Gaetan Lemonnier, Jerôme Lecardonnel, Jean Pierre Bidanel, et al.. Integrating blood transcriptome and immunity traits to identify markers of immune capacity in pigs. 69. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia. ⟨hal-02733943⟩

Fany Blanc, Tatiana Maroilley, Gaetan Lemonnier, Jean Jacques Leplat, Edwige Bouguyon, et al.. Individual genetic variability of vaccine responses in pigs. 11. Symposium du Réseau Français d'Immunologie des Animaux Domestiques, Mar 2018, Tours, France. ⟨hal-02790791⟩

Jordi Estellé, Nuria Mach Casellas, Yuliaxis Ramayo Caldas, Florence Levenez, Gaetan Lemonnier, et al.. On the influence of host genetics on gut microbiota composition in pigs. 69. Annual Meeting of the European Association of Animal Production (EAAP), Aug 2018, Dubrovnik, Croatia. 704 p. ⟨hal-02733939⟩

Fany Blanc, Tatiana Maroilley, Gaetan Lemonnier, Jean Jacques Leplat, Edwige Bouguyon, et al.. Genetic variability of vaccine responses in pigs: application to vaccines against Mycoplasma hyopneumoniae and Influenza A virus. 6. European Veterinary and Immunology Workshop (EVIW), British Society for Immunology. Londres, GBR., Sep 2018, Utrecht, Netherlands. ⟨hal-02734174⟩

Yuliaxis Ramayo Caldas, Aurélien Bernard, Laura Zingaretti, Milka Popova, Nuria Mach Casellas, et al.. Identification of microbial taxa linked to methane emission in Holstein and Charolais cattle by an integrative approach. Gut Microbiology: No longer the forgotten organ - 11. INRA-Rowett Symposium, Jun 2018, Aberdeen, United Kingdom. ⟨hal-02738326⟩

Francesca Massacci, El Mostafa Berri, Gaetan Lemonnier, Deborah Jardet, Fany Blanc, et al.. Impact of weaning age on the gut microbiota composition in piglets. 69. Annual Meeting of the European Federation of Animal Science (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia. 704 p. ⟨hal-02734751⟩

Fany Blanc, Tatiana Maroilley, Marie-Helene Pinard - van der Laan, Gaetan Lemonnier, Jean Jacques Leplat, et al.. What potential of genome-wide integrative approaches to predict vaccine responses?. 69. Annual Meeting of the European Association of Animal Production (EAAP), European Federation of Animal Science (EAAP). INT., Aug 2018, Dubrovnik, Croatia. 704 p. ⟨hal-02733938⟩

Fany Blanc, Gaetan Lemonnier, Jean Jacques Leplat, Edwige Bouguyon, Yvon Billon, et al.. Genetic individual variability of vaccine responses in pigs. 36. Conference of the International Society for Animal Genetics (ISAG), Jul 2017, Dublin, Ireland. ⟨hal-01608684⟩

Tatiana Maroilley, Gaetan Lemonnier, Jordi Estelle Fabrellas, Diane Esquerre, Marie‐josé Mercat, et al.. Allele specific expression analysis of the porcine blood transcriptome reveals extensive cis-regulation in immunity-related genes. 35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, United States. ⟨hal-01532670⟩

Jordi Estelle, Catherine Larzul, Nuria Mach, Florence Levenez, Yuliaxis Ramayo Caldas, et al.. Microbiote intestinal chez le porc : paramètres génétiques de sa composition et liens avec des caractères immunitaires. 48. Journées de la Recherche Porcine, Institut du Porc (IFIP). FRA., Feb 2016, Paris, France. ⟨hal-02742708⟩

Jordi Estellé, Catherine Larzul, Nuria Mach Casellas, Florence Levenez, Yuliaxis Ramayo-Caldas, et al.. Microbiote intestinal chez le porc : paramètres génétiques de sa composition et liens avec des caractères immunitaires. 48. Journées de la Recherche Porcine, Feb 2016, Paris, France. ⟨hal-02288150⟩

Caroline Achard, Yuliaxis Ramayo Caldas, Amine Ghozlane, Mathieu Almeida, Samuel Boucher, et al.. First rabbit gut microbial gene catalog and metagenomic insights into the resistome : links with antibiotic use. 16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada. ⟨hal-02792973⟩

Vincent Jacquier, Sylvie Combes, Jordi Estellé, Isabelle Oswald, Thierry Gidenne, et al.. Impact of antibiotherapy and rapidly fermentable fiber in the diet of young rabbit assessed by transcriptomic approaches: preliminary results. 11. World Rabbit Congress, Jun 2016, Qingdao, China. 417 p. ⟨hal-02739375⟩

Carol Lee, Marco Moroldo, Alvaro Perdomo, Nuria Mach Casellas, Sylvain Marthey, et al.. Evolution of the Major Histocompatibility Complex class I in wild pigs and peccaries. Annual Meeting of the Society for Molecular Biology and Evolution (SMBE), Jul 2016, Queensland, Australia. ⟨hal-01531670⟩

Caroline Achard, Yuliaxis Ramayo Caldas, Amine Ghozlane, Mathieu Almeida, Maria Ballester, et al.. First microbial gene catalog and antibiotic resistome of rabbit gut microbiota established by metagenomic sequencing. Symposium INRA ROWETT sur le microbiome du tube digestif. Microflore intestinale : amie ou ennemie ?, Jun 2016, clermont-ferrand, France. ⟨hal-02797803⟩

Caroline Achard, Beatrice Gabinaud, Sylvie Combes, Véronique Dupouy, Yuliaxis Ramayo Caldas, et al.. Role of the metacommunity in the colonization of rabbit's intestinal tract to fight against antibiotic-resistant bacteria. 16. International Symposium on Microbial Ecology - ISME16, Aug 2016, Montréal, Canada. ⟨hal-02799866⟩

Jordi Estellé, Claire Rogel Gaillard. The porcine gut microbiota: composition and links with host’s genetics and phenotypes. 67. Annual meeting of the European Federation of Animal Science (EAAP 2016), Aug 2016, Belfast, Ireland. 718 p. ⟨hal-02739772⟩

Liang Xiao, Jordi Estellé, Pia Kiilerich, Yuliaxis Ramayo-Caldas, Zhongkui Xia, et al.. The Pig’s other genome: a reference gene catalogue of the gut microbiome as a new resource for deep studies of the interplay between the host and its microbiome. 35. International Society for Animal Genetics Conference (2016), Jul 2016, Salt Lake City, United States. ⟨10.2527/jas2016.94supplement422x⟩. ⟨hal-02741979⟩

Vincent Jacquier, Sylvie Combes, Géraldine Pascal, Laurent Cauquil, Beatrice Gabinaud, et al.. Modulation de la composition l'écosystème digestif caecal du lapereau par voie alimentaire et relation avec son fonctionnement. 16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p. ⟨hal-02742208⟩

Fanny Calenge, Irène Gabriel, Sandrine Mignon-Grasteau, Jordi Estelle, Bertrand Bed'Hom. Genomics of microbiota and gut health. 9. European Symposium on Poultry Genetics, World's Poultry Science Association (WPSA). INT., Jun 2015, Tuusula, Finland. ⟨hal-02740658⟩

Jordi Estelle Fabrellas, Nuria Mach Casellas, Catherine Larzul, El Mostafa Berri, Yuliaxis Ramayo Caldas, et al.. Gut microbiota in swine: composition, genetic parameters, and links with immunity and production traits. Plant and Animal Genome XXIII Conference, Jan 2015, San Diego, United States. ⟨hal-01194002⟩

Caroline Achard, Véronique Dupouy, Susanna Siviglia, Nathalie Arpaillange, Beatrice Gabinaud, et al.. Etat des lieux de l'antibiorésistance en élevage cunicole français et application du concept d'exclusion compétitive pour limiter la transmission d'un microbiote maternal antibiorésistant. 16. Journées de la Recherche Cunicole, Nov 2015, Le Mans, France. 264 p. ⟨hal-02744277⟩

Caroline Achard, Véronique Dupouy-Guiraute, Yuliaxis Ramayo Caldas, Beatrice Gabinaud, Catherine Denis, et al.. Resistome of pig and rabbit gut microbiota using high-troughput sequencing and qPCR approaches. 6. Symposium on Antimicrobial Résistance in Animals and the Environment (ARAE), Jun 2015, Tours, France. 109p. ⟨hal-01536555⟩

Jordi Estellé, Nuria Mach Casellas, Yuliaxis Ramayo Caldas, Marie-Helene Pinard - van der Laan, . Inra-Denmark-Bgi Consortium, et al.. Pig’s gut microbiota: composition, and links with host genetic parameters, immunity and production traits. What have DNA sequencing technologies ever done for the animal sciences, International Livestock Research Institute (ILRI)., Oct 2015, Roslin, United Kingdom. ⟨hal-02739718⟩

Claire Gaillard, Jordi Estelle Fabrellas. Les microbes hébergés par les animaux : quels liens avec des objectifs de robustesse en élevage ?. Colloque AGENAE, May 2014, Nantes, France. 7 p. ⟨hal-01193957⟩

Jordi Estelle Fabrellas, Emmanuelle Bourneuf, Guillaume Piton, Jean Jacques Leplat, Stephan Bouet, et al.. Laser capture microdissection of skin melanocytes for the transcriptome characterization of a melanoma predisposition swine model. International Symposium of Microgenomics, May 2014, Paris, France. ⟨hal-01194005⟩

Nuria Mach Casellas, El Mostafa Berri, Jordi Estelle Fabrellas, Florence Levenez, Gaetan Lemonnier, et al.. Establishment of the swine gut microbiome during early life and further impact on adult health and performance. 34. International Society for Animal Genetics Conference, Jul 2014, Xi'an, China. ⟨hal-01193885⟩

Francoise Créchet, Clément de Obaldia, Amandine Blin, Diane Esquerre, Silvia Vincent-Naulleau, et al.. Implication de DICER dans l'ulcération du mélanome chez le porc. Séminaire du Département de Génétique Animale, Apr 2014, Fréjus, France. pp.1. ⟨hal-01607087⟩

Pierre-François Roux, Frédéric Lecerf, Anis Djari, Diane Esquerre, Sylvain Marthey, et al.. Utilisation des NGS pour la caractérisation génétique de lignées de poulet de chair et poules de ponte. 10. Journées de la Recherche Avicole et Palmipèdes à Foie Gras, Mar 2013, La Rochelle, France. pp.556-561. ⟨hal-01000659⟩

Nuria Mach Casellas, El Mostafa Berri, Diane Esquerre, Gaetan Lemonnier, Yvon Billon, et al.. Extensive comparison of genome wide transcription along pig small intestine and in Peyer’s patces by RNA-seq. 10. International Veterinary Immunology Symposium (IVIS), Aug 2013, Milano, Italy. ⟨hal-01193881⟩

Jean Pierre Bidanel, Dorothée Desson, Yvon Billon, Isabelle Oswald, Jordi Estelle Fabrellas, et al.. Paramètres génétiques de la réponse immunitaire et covariation des caractères de croissance et de carcasse chez le porc. 45. Journées Recherche Porcine, Feb 2013, Paris, France. 6 p. ⟨hal-01190240⟩

Vincent Jacquier, Jordi Estelle Fabrellas, Barbara Panneau, Jerôme Lecardonnel, Marco Moroldo, et al.. Validation of a new rabbit microarray: transcriptome variation in PBMCs after in vitro stimulation. 64. Annual Meeting of the European Federation of Animal Science (EAAP), European Association for Animal Production (EAAP). ITA., Aug 2013, Nantes, France. 660 p. ⟨hal-02747487⟩

Nuria Mach Casellas, Gaetan Lemonnier, Jerôme Lecardonnel, Jordi Estelle Fabrellas, Claire Gaillard. The peripheral blood transcriptome reflects variations in immunity traits in swine: towards identification of biomarkers. 10. International Veterinary Immunology Symposium, Aug 2013, Milano, Italy. ⟨hal-01193882⟩

Pierre-François Roux, Frédéric Lecerf, Anis Djari, Diane Esquerre, Sylvain Marthey, et al.. Using NGS data to characterize genetics of meet-type and egg-type chicken lines. 64th Annual Meeting of the European Federation of Animal Science (EAAP), Aug 2013, Nantes, France. pp.296. ⟨hal-01019218⟩

Marie Pierre Sanchez, Thierry Tribout, Nathalie Iannuccelli, Marcel Bouffaud, Bertrand Servin, et al.. Fine mapping of production and meat quality QTL in Large White pigs using the PorcineSNP60 Beadchip. EAAP, Aug 2012, Bratislava, Slovakia. ⟨hal-02745652⟩

Jordi Estelle, Diane Esquerre, Olivier Bouchez, Silvia Vincent-Naulleau, Per Wahlberg, et al.. Whole genome re-sequencing of the MeLiM porcine model for cutaneous melanoma. 33rd Conference of the International Society of Animal Genetics (ISAG), Jul 2012, Cairns, Australia. ⟨hal-01019843⟩

Marie Pierre Sanchez, Thierry Tribout, Nathalie Iannuccelli, Marcel Bouffaud, Bertrand Servin, et al.. Cartographie fine de régions QTL à l’aide de la puce PorcineSNP60 pour la qualité de la viande en race Large White. Journées des Sciences du muscle et technologie de la viansde, Nov 2012, Caen, France. ⟨hal-01190243⟩

Jaime Gongora, Nuria Mach, Jordi Estelle, Per Wahlberg, Sylvain Marthey, et al.. Efficiency of heterologous capture for targeted resequencing of the Major Histocompatibility Complex in Suidae and Tayassuidae. 20. Plant and Animal Genome, Labo/service de l'auteur, Ville service, Pays service., Jan 2012, San Diego, CA, United States. pp.P0623. ⟨hal-01019000⟩

Jordi Estelle Fabrellas, Laurence Flori, Yu Gao, Marie Pierre Sanchez, Jean Pierre Bidanel, et al.. Genome-wide association study for immunity traits in French Large White pigs. 33rd Conference of the International Society of Animal Genetics (ISAG), Jul 2012, Cairns, Australia. ⟨hal-01189794⟩

Claire Gaillard, Yu Gao, Nuria Mach Casellas, Jordi Estelle Fabrellas. Genetics and genomics of immune traits in swine. 4. European Veterinary Immunology Workshop (EVIW), Sep 2012, Edimbourg, United Kingdom. 1 p. ⟨hal-01193962⟩

Claire Gaillard, Nuria Mach Casellas, Jordi Estelle Fabrellas. Genome-wide association and transcriptome studies for immunity traits in French Large White pigs. 33. Conference of the International Society for Animal Genetics (ISAG), Jul 2012, Cairns, Australia. ⟨hal-01193964⟩

Nuria Mach Casellas, Yu Gao, Gaetan Lemonnier, Jerôme Lecardonnel, Jordi Estelle Fabrellas, et al.. Blood transcriptome as an emerging molecular phenotype to study immunocompetence in swine.. COST Action FA0902 Understanding and combating PRRS in Europe, Feb 2012, Lodi, Italy. 1 p. ⟨hal-01193961⟩

Jordi Estelle, Guillaume Piton, Claudia Bevilacqua, Stephan Bouet, Emmanuelle Bourneuf, et al.. High-throughput mRNA profiling of microdissected melanocytes and melanoma cells for the characterization of melanoma predisposition in a swine model. 7th EADO Congress, Jun 2011, Nantes, France. ⟨hal-01019847⟩

Marie-Laure Endale Ahanda, Zhi-Liang Hu, Jordi Estelle, Eric R. Fritz, Claire Gaillard, et al.. microRNA target prediction and 3'UTR polymorphism in swine. RNAi World Congress, Apr 2011, Boston, United States. ⟨hal-01000372⟩

Jordi Estelle Fabrellas, Florence Demenais, Claire Gaillard, Silvia Vincent-Naulleau, Emmanuelle Bourneuf. Biologie intégrative de la prédisposition au mélanome cutané chez le porc MeLiM. Ecole chercheurs "Génomique et Diversité des Caractères à déterminisme complexe, May 2011, La Colle sur Loup, France. ⟨hal-01193751⟩

Marie-Laure Endale Ahanda, Zhi-Liang Hu, Jordi Estelle Fabrellas, Eric R. Fritz, Claire Rogel Gaillard, et al.. In silico prediction of microRNAs targeting alleles of the Swine Leukocyte Antigen complex. ISAFG 2011, Oct 2011, Dublin, Ireland. ⟨hal-02803523⟩

Claire Gaillard, Jordi Estelle Fabrellas, Bertrand Bed'Hom, Jean Pierre Bidanel, Silvia Vincent-Naulleau, et al.. Sus-Flora project: a genetic and genomic study of gut microbiota and immune system homeostasis in swine. 1. International Symposium Pasteur Institute, Institut Pasteur [Paris]. Paris, FRA., Nov 2011, Paris, France. ⟨hal-01193995⟩

Jordi Corominas, Jordi Estelle, Yuliaxis Ramayo-Caldas, Mark Lathrop, Florence Demenais, et al.. Detection of CNVs throughout the genome of a porcine melanoma model.. IPCC 2011 - XXIst International Pigment Cell Conference, Sep 2011, Bordeaux, France. pp.Poster. ⟨hal-00999821⟩

Nuria Mach Casellas, Yu Gao, Gaetan Lemonnier, Jerôme Lecardonnel, Jordi Estelle Fabrellas, et al.. Blood transcriptome as an emerging molecular phenotype to refine immune traits in pig. 4. International Symposium on Animal Functional Genomics, Oct 2011, Dublin, Ireland. ⟨hal-01193877⟩

Jordi Estelle Fabrellas, Florence Demenais, Diana Zelenika, Mark Lathrop, Claire Gaillard, et al.. A Genome-Wide Association Study for Melanoma Predisposition in the MeLiM Biomedical Swine Model by using the PorcineSNP60 Beadchip. 32nd Conference for the International Society for Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. pp.Poster 402. ⟨hal-01193625⟩

Jordi Estelle Fabrellas, Hélène de Batz, Francoise Créchet, Guillaume Piton, Luca Fontanesi, et al.. c-kit and Melanoma Predisposition in Pigs : Sequence Variants, Association Analysis and Gene Expression. 32nd Conference for the International Society for Animal Genetics (ISAG), Jul 2010, Edinburgh, United Kingdom. pp.Poster. ⟨hal-01193626⟩

Jordi Estelle Fabrellas, Z.Q. Du, Francoise Créchet, Guillaume Piton, Denis Milan, et al.. High-density SNP genotyping of the SSC13 QTL region for melanoma predisposition in the MeLiM biomedical swine model. Pig Genome III Conference, A celebration for completing the pig genome sequence, 2009, Hinxton, United States. ⟨hal-01193444⟩

Jordi Estelle Fabrellas, Emmanuelle Bourneuf, Guillaume Piton, Jean Jacques Leplat, Stephan Bouet, et al.. Single-cell laser capture microdissection (LCM) for the transcriptome comparison of melanocytes and melanoma cells in the MeLiM biomedical swine model.. Pig Genome III Conference, A celebration for completing the pig genome sequence, 2009, Hinxton, United Kingdom. ⟨hal-01193436⟩

Emmanuelle Bourneuf, Jordi Estelle Fabrellas, Francoise Créchet, Hélène Gilbert, Guillaume Piton, et al.. The melanoblastoma-bearing Libechov minipig model: a tool for melanoma genetics. 7. World Congress on Melanoma, May 2009, Vienne, Austria. ⟨hal-01193448⟩

Bénédicte Lebret, Ludovic Brossard, Florence Garcia-Launay, Justine Faure, Bertrand Servin, et al.. Projet européen multi-acteurs TREASURE : diversité des races locales de porcs et des systèmes de production pour des produits traditionnels de qualité élevée et des filières porcines durables. Défis scientifiques Phase, Nov 2019, Rennes, France. 2019, Recueil des résumés. ⟨hal-02738056⟩

Fany Blanc, Jordi Estellé, Gaëtan Lemonnier, Jean Jacques Leplat, Edwige Bouguyon, et al.. Searching for markers of immunocompetence in blood: application to vaccination against Influenza A virus in pigs. International Veterinary Immunology Symposium (IVIS), Aug 2019, Seattle, United States. 2019. ⟨hal-02285632⟩

Fany Blanc, Tatiana Maroilley, Gaetan Lemonnier, Jean Jacques Leplat, Edwige Bouguyon, et al.. Genetic variability of vaccine responses in pigs: application to vaccines against Mycoplasma hyopneumoniae and Influenza A virus. 27. International Plant and Animal Genome Conference (PAG 2019), Jan 2019, San Diego, United States. 2019. ⟨hal-02738393⟩

Fany Blanc, Bertrand Bed’hom, Jordi Estellé, Olivier Bouchez, Marie-Noelle Rossignol, et al.. How to predict that some animals respond better to vaccination than others: application to vaccination against Eimeria maxima in chickens. 11. European Symposium on Poultry Genetics, Oct 2019, Prague, Czech Republic. ⟨hal-02924087⟩

Tatiana Maroilley, Mustapha Berri, Gaetan Lemonnier, D. Esquerré, Claire Chevaleyre, et al.. Immunome differences between porcine ileal and jejunal Peyer’s patches revealed by global transcriptome sequencing of gut-associated lymphoid tissues. 11. Symposium of the French Domestic Animal Immunology Network (IAD 2018), Mar 2018, Tours, France. 56 p., 2018. ⟨hal-02737197⟩

Claire Rogel Gaillard, Marie-Helene Pinard - van der Laan, Fany Blanc, Jordi Estelle Fabrellas, Bertrand Bed'Hom. Approches intégratives pour prédire la réponse vaccinale. Journées Département INRA de Génétique Animale, Oct 2018, Dienné, France. 2018. ⟨hal-02733942⟩

Jordi Estellé, R. Savić, Danijel Karolyi, K. Salaipal, Marie-José Mercat, et al.. Gut microbiota analyses for sustainable European local porcine breeds: a TREASURE pilot study. 69. Annual Meeting of the European Association of Animal Production (EAAP), Aug 2018, Dubrovnik, Croatia. Wageningen Academic Publishers, Annual Meeting of the European Association for Animal Production, 24, 2018, Annual Meeting of the European Association for Animal Production. ⟨hal-02478450⟩

Claire Rogel Gaillard, Fany Blanc, Fanny Calenge, Jordi Estelle Fabrellas, Marie-Helene Pinard - van der Laan, et al.. Immunophénotypage à grande échelle pour des approches de génétique. Journées Scientifiques du Département de Génétique Animale, Oct 2018, Dienné, France. 2018. ⟨hal-02733940⟩

Fanny Calenge, Jordi Estelle, Bertrand Bed'Hom, Ceren Simsek, Christelle Hennequet-Antier, et al.. Identification of genomic regions associated with caecal microbiota composition in a broiler line. 10th European Symposium on Poultry Genetics, Jun 2017, Saint-Malo, France. 2017, Proceedings of the 10th European Symposium on Poultry Genetics. ⟨hal-01607406⟩

Tatiana Maroilley, Maria Ballester Devis, Gaetan Lemonnier, Marie‐josé Mercat, Yvon Billon, et al.. Etude de la capacité immunitaire chez le porc Large White : recherche de marqueurs génétiques liés à l'expression des gènes dans le sang. 48. Journées de la Recherche Porcine, Feb 2016, Paris, France. IFIP - Institut du Porc, Journées de la Recherche Porcine en France, 2016, Journées de la Recherche Porcine en France. ⟨hal-01533880⟩

Fanny Calenge, Jordi Estelle Fabrellas, Christelle Hennequet-Antier, Aziza Caidi, Pascale Quéré, et al.. Impact of a genetic selection led on digestive efficiency on gut microbiota composition in broiler chicken. 10. INRA-Rowett Symposium on Gut Microbiology. Twenty years and counting, Jun 2016, Clermont-Ferrand, France. 2016. ⟨hal-01608757⟩

A.I. Fernández, L. Fontanesi, R. Bozzi, Jordi Estellé, C. Ovilo, et al.. Characterization and diversity analysis of European local pig breeds and production systems under Treasure project framework. 35. Conference of the International Society for Animal Genetics (ISAG), Jul 2016, Salt Lake City, Utah, United States. ASAS - American Society of Animal Science, Journal of Animal Science, 94 (suppl. 4), 2016, 35th International Society for Animal Genetics Conference. ⟨10.2134/jas2016.94supplement494a⟩. ⟨hal-02743126⟩

Nuria Mach Casellas, El Mostafa Berri, Diane Esquerre, Claire Chevaleyre, Gaetan Lemonnier, et al.. Exhaustive comparison of gene expression along pig small Intestine and in Peyer’s patches performed by RNA-Seq. Plant and Animal Genome XXII, Jan 2014, San Diego, United States. 2014. ⟨hal-01193883⟩

Jordi Estelle Fabrellas, Nuria Mach Casellas, Yuliaxis Ramayo Caldas, Florence Levenez, Gaetan Lemonnier, et al.. The influence of host’s genetics on the gut microbiota composition in pigs and its links with immunity traits. 10. World Congress of Genetics Applied to Livestock Production, Aug 2014, Vancouver, Canada. 2014, Proceedings, 10th World Congress of Genetics Applied to Livestock Production. ⟨hal-01193952⟩

Jordi Estelle Fabrellas, Nuria Mach Casellas, Yuliaxis Ramayo Caldas, Florence Levenez, Gaetan Lemonnier, et al.. Gut microbiota composition in swine: genetic parameters and links with immunity traits. 34. International Society for Animal Genetics Conference (ISAG), Jul 2014, Xi'an, China. 2014. ⟨hal-01193953⟩

Nuria Mach Casellas, Patricia Lepage, Florence Levenez, Gaetan Lemonnier, Catherine Denis, et al.. Gut microbiota and immunity interplay at the mucosal interface in swine, a data integration approach. Statistical Methods for (Post)-Genomics Data workshop, Jan 2013, Amsterdam, Netherlands. 2013, Workshop Programme & Abstracts. ⟨hal-01193880⟩

Marie Pierre Sanchez, Thierry Tribout, Nathalie Iannuccelli, Marcel Bouffaud, Bertrand Servin, et al.. Cartographie fine de régions QTL à l’aide de la puce Porcine SNP60 pour l’ingestion, la croissance, la composition de la carcasse et la qualité de la viande en race Large White. 44. Journées de la Recherche Porcine, Feb 2012, Paris, France. IFIP - Institut du Porc ; INRA, Journées de la Recherche Porcine en France, 44, 2012, Journees de la Recherche Porcine en France. ⟨hal-01190241⟩

Nuria Mach Casellas, Yu Gao, Gaetan Lemonnier, Jerôme Lecardonnel, Jordi Estelle Fabrellas, et al.. The peripheral blood transcriptome dynamically reflects immunocompetence in swine. 33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. 2012, ISAG Abstracts. ⟨hal-01193879⟩

Nuria Mach Casellas, Marco Moroldo, Sylvain Marthey, Asako Ando, Jun-Heon Lee, et al.. Diversity studies of SLA haplotypes by targeted high-throughput resequencing of the whole locus. 33. Conference of the International Society for Animal Genetics, Jul 2012, Cairns, Australia. 2012, ISAG Abstracts. ⟨hal-01193878⟩

Jordi Estelle Fabrellas, Emmanuelle Bourneuf, Guillaume Piton, Jean Jacques Leplat, Stephan Bouet, et al.. Laser capture microdissection of melanocytes and melanoma cells for the transcriptome characterization of melanoma predisposition in a swine model. Animal Genomics for Animal Health International Symposium (AGAH 2010), May 2010, Paris, France. 2010. ⟨hal-01193750⟩