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Clement Jonquet

Directeur de recherche – INRAE (MISTEA), Chercheur associé – Université de Montpellier (LIRMM)

84%

Libre accès

37

Documents

Affiliations actuelles

1100640
1096435

Identifiants chercheurs

jonquet
ResearcherId : B-2364-2012
IdRef : 076431215
0000-0002-2404-1582

Site web

http://www.lirmm.fr/~jonquet/

Publications

849093

	AgroPortal: A vocabulary and ontology repository for agronomy Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzale Yeumo Computers and Electronics in Agriculture, 2018, 144, pp.126-143. ⟨10.1016/j.compag.2017.10.012⟩ Article dans une revue lirmm-01679502v1
	NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation Marcos Martínez-Romero , Clement Jonquet , Martin J. O’connor , John Graybeal , Alejandro Pazos Journal of Biomedical Semantics, 2017, 8 (21), ⟨10.1186/s13326-017-0128-y⟩ Article dans une revue lirmm-01598848v1
	NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources Clement Jonquet , Paea Lependu , Sean Falconer , Adrien Coulet , Natalya F. Noy Journal of Web Semantics, 2011, 9 (3), pp.316-324. ⟨10.1016/j.websem.2011.06.005⟩ Article dans une revue lirmm-00622155v2
	Building a Biomedical Ontology Recommender Web Service Clement Jonquet , Mark A. Musen , Nigam H. Shah Journal of Biomedical Semantics, 2010, 1 (S1), pp.29, Selected in Pr. Russ Altman’s 2011 Year in Review. ⟨10.1186/2041-1480-1-S1-S1⟩ Article dans une revue hal-00489093v2
	BioPortal: ontologies and integrated data resources at the click of a mouse Natalya F. Noy , Nigam H. Shah , Patricia L. Whetzel , Benjamin Dai , Michael Dorf Nucleic Acids Research, 2009, 37, pp.170-173. ⟨10.1093/nar/gkp440⟩ Article dans une revue hal-00492020v2
	Comparison of concept recognizers for building the Open Biomedical Annotator Nigam Shah , Nipun Bhatia , Clement Jonquet , Daniel L. Rubin , Annie P. Chiang BMC Bioinformatics, 2009, 10 (9:S14), pp.9:S14. ⟨10.1186/1471-2105-10-S9-S14⟩ Article dans une revue hal-00492026v1
	Ontology-driven Indexing of Public Datasets for Translational Bioinformatics Nigam H. Shah , Clement Jonquet , Annie P. Chiang , Atul J. Butte , Rong Chen BMC Bioinformatics, 2009, 10 (2:S1), pp.1-10. ⟨10.1186/1471-2105-10-S2-S1⟩ Article dans une revue hal-00492025v2

	Reusing the NCBO BioPortal technology for agronomy to build AgroPortal Clement Jonquet , Anne Toulet , Elizabeth Arnaud , Sophie Aubin , Esther Dzalé-Yeumo ICBO 2016 - 7th International Conference on Biomedical Ontologies, P. Jaiswal; R. Hoehndorf, Aug 2016, Corvallis, OR, United States Communication dans un congrès hal-01398251v1
	Roadmap for a multilingual BioPortal Clement Jonquet , Vincent Emonet , Mark A. Musen MSW: Multilingual Semantic Web, Jun 2015, Portoroz, Slovenia Communication dans un congrès lirmm-01172218v1
	Gestion du multilinguisme dans un portail d’ontologies: étude de cas pour le NCBO BioPortal Clement Jonquet , Mark A. Musen TOTh Workshop, Dec 2014, Bruxelles, Belgique Communication dans un congrès lirmm-01099882v1
	The NCBO Annotator: OntologyBased Annotation as a Web Service Patricia L. Whetzel , Clement Jonquet , Cherie H. Youn , Michael Dorf , Ray Fergerson 2nd International Conference on Biomedical Ontology (ICBO 2011), Demo session, O. Bodenreider, M. E. Martone, A. Ruttenberg, Jul 2011, Buffalo, NY, United States. pp.302-303 Communication dans un congrès hal-04271625v1
	The Lexicon Builder Web service: Building Custom Lexicons from two hundred Biomedical Ontologies Gautam K. Parai , Clement Jonquet , Rong Xu , Mark A. Musen , Nigam H. Shah American Medical Informatics Association Annual Symposium, AMIA'10, Nov 2010, Washington, DC, United States. pp.6 Communication dans un congrès hal-00558033v1
	Optimize First, Buy Later: Analyzing Metrics to Ramp-up Very Large Knowledge Bases Paea Lependu , Natalya F. Noy , Clement Jonquet , Paul R. Alexander , Nigam H. Shah 9th International Semantic Web Conference (ISWC 2010), Nov 2010, Shangai, China. pp.486-501 Communication dans un congrès hal-00558036v1
	Indexation et intégration de ressources textuelles à l'aide d'ontologies : application au domaine biomédical Clement Jonquet , Adrien Coulet , Nigam Shah , Mark A. Musen 21èmes Journées Francophones d'Ingénierie des Connaissances (IC 2010), Jun 2010, Nimes, France. pp.271-282 Communication dans un congrès hal-00488419v1
	NCBO Resource Index: Ontology-Based Search and Mining of Biomedical Resources Clement Jonquet , Paea Lependu , Sean M. Falconer , Adrien Coulet , Natalya F. Noy 9th International Semantic Web Conference (ISWC 2010), Semantic Web Challenge winner award, Nov 2010, Shangai, China. pp.8 Communication dans un congrès hal-00557982v1
	What Four Million Mappings Can Tell You about Two Hundred Ontologies Amir Ghazvinian , Natasha F. Noy , Clement Jonquet , Nigam H. Shah , Mark A. Musen 8th International Semantic Web Conference (ISWC2009), Oct 2009, Washington DC, United States. pp.229-242 Communication dans un congrès hal-00489094v1
	Ontology Services for Semantic Applications in Healthcare and Life Sciences Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Adrien Coulet , Patricia L. Whetzel AMIA 2009 - American Medical Informatics Association Annual Symposium, Nov 2009, San Francisco, United States. pp.515 Communication dans un congrès hal-04276271v1
	BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Benjamin Dai , Michael Dorf 1st International Conference on Biomedical Ontology (ICBO 2009), Poster session, B. Smith, Jul 2009, Buffalo, United States. pp.197 Communication dans un congrès hal-04276312v1
	Un service Web pour l'annotation sémantique de données biomédicales avec des ontologies Clement Jonquet , Nigam Shah , Mark A. Musen 13èmes Journées Francophones d'Informatique Médicale, JFIM'09, Apr 2009, Nice, France, France. pp.12 Communication dans un congrès hal-00492022v1
	Prototyping a Biomedical Ontology Recommender Service Clement Jonquet , Nigam Shah , Mark A. Musen 12th Annual Bio-Ontologies SIG Meeting, P. Lord, N. Shah, S.-A. Sansone, S. Stephens, L. Soldatova, Jun 2009, Stockholm, Sweden Communication dans un congrès hal-04271509v1
	The Open Biomedical Annotator Clement Jonquet , Nigam Shah , Mark A. Musen AMIA Summit on Translational Bioinformatics, Mar 2009, San Francisco, CA, United States. pp.56-60 Communication dans un congrès hal-00492024v1
	NCBO Annotator: Semantic Annotation of Biomedical Data Clement Jonquet , Nigam H. Shah , Cherie H. Youn , Mark A. Musen , Chris Callendar ISWC 2009 - 8th International Semantic Web Conference, Poster and Demo Session, Oct 2009, Washington, DC, United States Communication dans un congrès hal-04276274v1
	A System for Ontology-Based Annotation of Biomedical Data Clement Jonquet , Mark A. Musen , Nigam Shah International Workshop on Data Integration in The Life Sciences 2008, DILS'08, Jun 2008, Evry, France. pp.144-152 Communication dans un congrès hal-00279660v1
	BioPortal: A Web Repository for Biomedical Ontologies and Data Resources Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf , Nicholas Griffith 7th International Semantic Web Conference (ISWC 2008), Poster and demo session, Oct 2008, Karlsruhe, Germany Communication dans un congrès hal-04276324v1

	Adoption of BioPortal's Ontology Registry Software: The Emerging OntoPortal Community John Graybeal , Clement Jonquet , Nicola Fiore , Mark A. Musen RDA P13 - 13th Research Data Alliance Plenary Meeting, Apr 2019, Philadelphia, United States. Poster de conférence lirmm-02360625v1
	D2KAB project taking off: Data to Knowledge in Agronomy and Biodiversity Sophie Aubin , Anne-Francoise Adam-Blondon , Michael Alaux , Mouhamadou Ba , Stéphan Bernard 14th Research Data Alliance Plenary Conference (RDA P14), Best poster award, Oct 2019, Helsinki, Finland. , 2019, ⟨10.5281/zenodo.3520300⟩ Poster de conférence lirmm-02351000v1
	Ontology Web Services for Semantic Applications Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet Pacific Symposium on Biocomputing (PSB 2010), Poster session, Jan 2010, Waimea, United States. Poster de conférence hal-04297858v1
	Ontology-based Tools to Enhance the Curation Workflow Patricia L. Whetzel , Nigam H. Shah , Natasha F. Noy , Clement Jonquet , Cherie H. Youn International Society for Biocuration. 4th International Biocuration Conference (Biocuration 2010), Poster session, Oct 2010, Tokyo, Japan. , W2-5, pp.47 Poster de conférence hal-04276262v1
	Ontology-based Web Services for Data Annotation and Integration Patricia L. Whetzel , Nigam H. Shah , Natalya Noy , Clement Jonquet , Adrien Coulet 18th International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Technology track, Jul 2010, Boston, United States. , TT33, 2010 Poster de conférence lirmm-01605892v1
	Ontology-based Web Services for Semantic Applications Patricia L. Whetzel , Nigam H. Shah , Natalya F. Noy , Clement Jonquet , Adrien Coulet 13th Annual Bio-Ontologies SIG Meeting, Poster session, Jul 2010, Boston, United States. Poster de conférence hal-04271647v1
	BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf 12th Annual Bio-Ontologies SIG Meeting, Poster session, Jun 2009, Stockholm, Sweden Poster de conférence hal-04297907v1
	BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf 17th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2009) and 8th European Conference on Computational Biology (ECCB 2009), Poster session, Jun 2009, Stockholm, Sweden. Poster de conférence hal-04297940v1
	BioPortal: A Web Repository for Biomedical Ontologies and Data Resources Patricia L. Whetzel , Natalya F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf 3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany Poster de conférence hal-04300487v1
	BioPortal: A Web Repository for Biomedical Ontologies and Data Resources Patricia L. Whetzel , Natasha F. Noy , Nigam H. Shah , Benjamin Dai , Michael Dorf Pacific Symposium on Biocomputing (PSB 2009), Poster session, Jan 2009, Waimea, HI, United States. Poster de conférence hal-04297888v1
	Billion Data Points Trapped in International Data Repository Daring rescue Planned! Simon N. Twigger , Jennifer Smith , Rajni Nigam , Clement Jonquet , Mark A. Musen 3rd International Biocuration Conference (Biocuration 2009), Poster session, Apr 2009, Berlin, Germany Poster de conférence hal-04300504v1
	BioPortal: ontologies and data resources with the click of a mouse. Mark A. Musen , Nigam H. Shah , Natasha F. Noy , Benjamin Dai , Michael Dorf American Medical Informatics Association Annual Symposium (AMIA 2008), Demonstration session, Nov 2008, Washington DC, United States. pp.1223-4, 2008 Poster de conférence hal-04300575v1

	Help will be provided for this task: Ontology-Based Annotator Web Service Clement Jonquet , Mark A. Musen , Nigam H. Shah Stanford University. 2008, pp.BMIR2008-1317 Rapport hal-04312971v1