Jonathan Romiguier

Documents

Présentation

Publications

	Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression Tomas Kay , Joanito Liberti , Thomas Richardson , Sean Mckenzie , Chelsea Weitekamp PLoS Biology, 2023, 21 (7), pp.e3002203. ⟨10.1371/journal.pbio.3002203⟩ Article dans une revue hal-04301989v1
	Detection of F1 Hybrids from Single-genome Data Reveals Frequent Hybridization in Hymenoptera and Particularly Ants Arthur Weyna , Lucille Bourouina , Nicolas Galtier , Jonathan Romiguier Molecular Biology and Evolution, 2022, 39 (4), pp.msac071. ⟨10.1093/molbev/msac071⟩ Article dans une revue hal-03686117v1
	Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality Jonathan Romiguier , Marek Borowiec , Arthur Weyna , Quentin Helleu , Etienne Loire Current Biology - CB, 2022, 32 (13), pp.942 - 2947.e4. ⟨10.1016/j.cub.2022.05.001⟩ Article dans une revue hal-03685595v1
	Hybridization enables the fixation of selfish queen genotypes in eusocial colonies Arthur Weyna , Jonathan Romiguier , Charles Mullon Evolution Letters, 2021, ⟨10.1002/evl3.253⟩ Article dans une revue hal-03356584v1
	DILS: Demographic inferences with linked selection by using ABC Christelle Fraïsse , Iva Popovic , Clément Mazoyer , Bruno Spataro , Stephane Delmotte Molecular Ecology Resources, 2021, ⟨10.1111/1755-0998.13323⟩ Article dans une revue hal-03156998v1
	MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics Rémi Allio , Alex Schomaker‐bastos , Jonathan Romiguier , Francisco Prosdocimi , Benoit Nabholz Molecular Ecology Resources, 2020, 20, pp.892-905. ⟨10.1111/1755-0998.13160⟩ Article dans une revue hal-02869919v1
	Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum. Yacine Ben Chehida , Julie Thumloup , Cassie Schumacher , Timothy Harkins , Alex Aguilar Scientific Reports, 2020, 10 (1), pp.15190. ⟨10.1038/s41598-020-71603-9⟩ Article dans une revue hal-03020351v1
	Vulnerability to Fishing and Life History Traits Correlate with the Load of Deleterious Mutations in Teleosts Jonathan Rolland , Dolph Schluter , Jonathan Romiguier Molecular Biology and Evolution, 2020, 37 (8), pp.2192-2196. ⟨10.1093/molbev/msaa067⟩ Article dans une revue hal-03024742v1
	The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies Christelle Fraïsse , Camille Roux , Pierre-Alexandre Gagnaire , Jonathan Romiguier , Nicolas Faivre PeerJ, 2018, 6, ⟨10.7717/peerj.5198⟩ Article dans une revue hal-01882981v1
	Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion Nicolas Galtier , Camille Roux , Marjolaine Rousselle , Jonathan Romiguier , Emeric Figuet Molecular Biology and Evolution, 2018, 35 (5), pp.1092 - 1103. ⟨10.1093/molbev/msy015⟩ Article dans une revue hal-01806906v1
	Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour Jonathan Romiguier , Jonathan Rolland , Claire Morandin , Laurent Keller BMC Evolutionary Biology, 2018, 18 (1), ⟨10.1186/s12862-018-1159-4⟩ Article dans une revue hal-02397984v1
	Extensive recent secondary contacts between four European white oak species Thibault Leroy , Camille Roux , Laure Villate , Catherine Bodénès , Jonathan Romiguier New Phytologist, 2017, 214 (2), pp.865-878. ⟨10.1111/nph.14413⟩ Article dans une revue hal-01608621v1
	Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence Camille Roux , Christelle Fraïsse , Jonathan Romiguier , Yoann Anciaux , Nicolas Galtier PLoS Biology, 2016, 14 (12), ⟨10.1371/journal.pbio.2000234⟩ Article dans une revue hal-01899028v1
	Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates Emeric Figuet , Marion Ballenghien , Jonathan Romiguier , Nicolas Galtier Genome Biology and Evolution, 2015, 7 (1), pp.240-250. ⟨10.1093/gbe/evu277⟩ Article dans une revue hal-01900679v1
	L’investissement parental des espèces animales prédit leur diversité génétique Nicolas Galtier , Jonathan Romiguier Médecine/Sciences, 2015, 31 (1), pp.17-19. ⟨10.1051/medsci/20153101005⟩ Article dans une revue hal-03035755v1
	K r /K c but not d N /d S correlates positively with body mass in birds, raising implications for inferring lineage-specific selection Claudia C Weber , Jonathan Romiguier , Benoit Nabholz , Hans Ellegren Genome Biology, 2014, 15 (12), pp.542. ⟨10.1186/s13059-014-0542-8⟩ Article dans une revue hal-01919685v1
	OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals Emmanuel J.P. Douzery , Celine Scornavacca , Jonathan Romiguier , Khalid Belkhir , Nicolas Galtier Molecular Biology and Evolution, 2014, 31 (7), pp.1923-1928. ⟨10.1093/molbev/msu132⟩ Article dans une revue hal-01133634v1
	Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition Claudia C. Weber , Bastien Boussau , Jonathan Romiguier , Erich D. Jarvis , H. Ellegren Genome Biology, 2014, 15, pp.549. ⟨10.1186/s13059-014-0549-1⟩ Article dans une revue hal-02045537v1
	Comparative population genomics in animals uncovers the determinants of genetic diversity Jonathan Romiguier , P Gayral , M Ballenghien , Arnaud Bernard , V Cahais Nature, 2014, 515 (7526), pp.261-263. ⟨10.1038/nature13685⟩ Article dans une revue hal-01313724v1
	Population genomics of eusocial insects: the costs of a vertebrate-like effective population size Jonathan Romiguier , Joao M. Lourenco , Philippe Gayral , Nicolas Faivre , Lucy A Weinert Journal of Evolutionary Biology, 2014, 2 7, pp.5 9 3 - 6 0 3. ⟨10.1111/jeb.12331⟩ Article dans une revue hal-01082760v1
	Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals Emeric Figuet , Jonathan Romiguier , Julien y Dutheil , Nicolas Galtier Journal of Evolutionary Biology, 2014, 27 (5), pp.899 - 910. ⟨10.1111/jeb.12361⟩ Article dans une revue hal-01900719v1
	Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placentalmammals Jonathan Romiguier , Vincent Ranwez , Frédéric Delsuc , Nicolas Galtier , Emmanuel J.P. Douzery Molecular Biology and Evolution, 2013, 30 (9), pp.2134-2144. ⟨10.1093/molbev/mst116⟩ Article dans une revue hal-01268462v1
	Genomic evidence for large, long-lived ancestors to placental mammals. Jonathan Romiguier , Vincent Ranwez , Emmanuel J.P. Douzery , Nicolas Galtier Molecular Biology and Evolution, 2013, 30 (1), pp.5-13. ⟨10.1093/molbev/mss211⟩ Article dans une revue hal-01268010v1
	Efficient selection of branch-specific models of sequence evolution. Julien y Dutheil , Nicolas Galtier , Jonathan Romiguier , Emmanuel J.P. Douzery , Vincent Ranwez Molecular Biology and Evolution, 2012, 29 (7), pp.1861-1874. ⟨10.1093/molbev/mss059⟩ Article dans une revue hal-00965698v1
	Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping. Jonathan Romiguier , Emeric Figuet , Nicolas Galtier , Emmanuel J.P. Douzery , Bastien Boussau PLoS ONE, 2012, 7 (3), pp.e33852. ⟨10.1371/journal.pone.0033852⟩ Article dans une revue hal-00965722v1
	Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes Jonathan Romiguier , Vincent Ranwez , Emmanuel J P Douzery , Nicolas Galtier Genome Research, 2010, 20 (8), pp.1001 - 1009. ⟨10.1101/gr.104372.109⟩ Article dans une revue hal-03327982v1

	Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating bees Arthur Weyna , Jonathan Romiguier 2021, pp.e2. ⟨10.24072/pcjournal.3⟩ Autre publication scientifique hal-03685372v2

	Evolutionary history of the porpoises ( Phocoenidae ) across the speciation continuum: a mitogenome phylogeographic perspective Yacine Ben Chehida , Julie Thumloup , Cassie Schumacher , Timothy Harkins , Alex Aguilar 2020 Pré-publication, Document de travail hal-02915433v1

	Phylogénomique et stratégies d'histoires de vie des mammifères placentaires : apports de la théorie de la conversion génique biaisée Jonathan Romiguier Sciences du Vivant [q-bio]. Université Montpellier 2 (Sciences et Techniques), 2012. Français. ⟨NNT : ⟩ Thèse tel-02809876v1

Jonathan Romiguier

Présentation

Publications

Social network position is a major predictor of ant behavior, microbiota composition, and brain gene expression

Detection of F1 Hybrids from Single-genome Data Reveals Frequent Hybridization in Hymenoptera and Particularly Ants

Ant phylogenomics reveals a natural selection hotspot preceding the origin of complex eusociality

Hybridization enables the fixation of selfish queen genotypes in eusocial colonies

DILS: Demographic inferences with linked selection by using ABC

MitoFinder: Efficient automated large-scale extraction of mitogenomic data in target enrichment phylogenomics

Mitochondrial genomics reveals the evolutionary history of the porpoises (Phocoenidae) across the speciation continuum.

Vulnerability to Fishing and Life History Traits Correlate with the Load of Deleterious Mutations in Teleosts

The divergence history of European blue mussel species reconstructed from Approximate Bayesian Computation: the effects of sequencing techniques and sampling strategies

Codon Usage Bias in Animals: Disentangling the Effects of Natural Selection, Effective Population Size, and GC-Biased Gene Conversion

Phylogenomics of palearctic Formica species suggests a single origin of temporary parasitism and gives insights to the evolutionary pathway toward slave-making behaviour

Extensive recent secondary contacts between four European white oak species

Shedding Light on the Grey Zone of Speciation along a Continuum of Genomic Divergence

Biased Gene Conversion and GC-Content Evolution in the Coding Sequences of Reptiles and Vertebrates

L’investissement parental des espèces animales prédit leur diversité génétique

K r /K c but not d N /d S correlates positively with body mass in birds, raising implications for inferring lineage-specific selection

OrthoMaM v8: A Database of Orthologous Exons and Coding Sequences for Comparative Genomics in Mammals

Evidence for GC-biased gene conversion as a driver of between-lineage differences in avian base composition

Comparative population genomics in animals uncovers the determinants of genetic diversity

Population genomics of eusocial insects: the costs of a vertebrate-like effective population size

Mitochondrial DNA as a tool for reconstructing past life-history traits in mammals

Less is more in mammalian phylogenomics: AT-rich genes minimize tree conflicts and unravel the root of placentalmammals

Genomic evidence for large, long-lived ancestors to placental mammals.

Efficient selection of branch-specific models of sequence evolution.

Fast and robust characterization of time-heterogeneous sequence evolutionary processes using substitution mapping.

Contrasting GC-content dynamics across 33 mammalian genomes: Relationship with life-history traits and chromosome sizes

Relaxation of purifying selection suggests low effective population size in eusocial Hymenoptera and solitary pollinating bees

Evolutionary history of the porpoises ( Phocoenidae ) across the speciation continuum: a mitogenome phylogeographic perspective

Phylogénomique et stratégies d'histoires de vie des mammifères placentaires : apports de la théorie de la conversion génique biaisée