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Diversity and comparative genomics of Microviridae in Sphagnum-dominated peatlands

 Achim Quaiser , Alexis Dufresne , Flore Ballaud , Simon Roux , Yvan Zivanovic , et al.
Frontiers in Microbiology, 2015, 6, pp.375. ⟨10.3389/fmicb.2015.00375⟩
Article dans une revue hal-01149546v1

Viral Regulation of Prokaryotic Carbon Metabolism in a Hypereutrophic Freshwater Reservoir Ecosystem (Villerest, France)

 Angia Sriram Pradeep Ram , Jonathan Colombet , Fanny Perrière , Antoine Thouvenot , Télesphore Sime-Ngando
Frontiers in Microbiology, 2016, 7, ⟨10.3389/fmicb.2016.00081⟩
Article dans une revue hal-01623641v1
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Honeybee Conservation centers in Western Europe: an innovative strategy using sustainable beekeeping to reduce honeybee decline

 Miguel Vilas Boas , Maria Alice Pinto , Catia Neves , Lionel Garnery , Hélène Legout , et al.
44. Apimondia congress, Sep 2015, Daejon, South Korea. 2015
Poster de conférence hal-01216261v1

Molecular diversity studies in Lake Pavin reveal the ecological importance of parasitic true fungi in the plankton

 Telesphore Sime-Ngando , Mélanie Gerphagnon , Jonathan Colombet , Marlène M. Jobard , Emilie E. Lefèvre , et al.
Lac Pavin - History, geology, biogeochemistry, and sedimentology of a deep meromictic maar lake, 2016
Chapitre d'ouvrage hal-01623857v1
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Fungal parasitism: life cycle, dynamics and impact on cyanobacterial blooms

 Mélanie Gerphagnon , Delphine Latour , Jonathan Colombet , Télesphore Sime-Ngando
PLoS ONE, 2013, 8 (4), pp.e60894. ⟨10.1371/journal.pone.0060894⟩
Article dans une revue hal-00843243v1
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Seasonal microbial food web dynamics in contrasting Southern Ocean productivity regimes

 Urania Chistaki , Audrey Gueneugues , Yan Liu , Stéphane Blain , Philippe Catala , et al.
Limnology and Oceanography, 2021, 66 (1), pp.108-122. ⟨10.1002/lno.11591⟩
Article dans une revue hal-03034631v1

Lake Pavin: A pioneer site for ecological studies of freshwater viruses

 Telesphore Sime-Ngando , Yvan Bettarel , Jonathan Colombet , Stéphanie Palesse , Angia Sriram Pradeep Ram , et al.
Lake Pavin: History, biogeochemistry and sedimentology of a deep meromictic crater lake, 2016
Chapitre d'ouvrage hal-01623848v1

Differential impact of lytic viruses on the taxonomical resolution of freshwater bacterioplankton community structure

 Jitendra Keshri , Angia Sriram Pradeep Ram , Jonathan Colombet , Fanny Perrière , Antoine Thouvenot , et al.
Water Research, 2017, 124, pp.129 - 138. ⟨10.1016/j.watres.2017.07.053⟩
Article dans une revue hal-01624070v1
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Trophic conditions influence widespread distribution of Aster-Like nanoparticles within aquatic environments

 Maxime Fuster , Hermine H. Billard , Marie Mandart , Johannes Steiger , Telesphore Sime-Ngando , et al.
Microbial ecology, 2020, 80 (4), pp.741-745. ⟨10.1007/s00248-020-01541-6⟩
Article dans une revue hal-03084202v1
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Diversity and Structure of the Prokaryotic Communities Indigenous to Two Volcanic Lakes: Nyos and Monoun in Cameroon

 Paul-Alain Nana , Moïse Nola , Geneviève Bricheux , Zéphyrin Fokam , Pierre Ngassam , et al.
Open Journal of Ecology, 2020, 10 (09), pp.632-650. ⟨10.4236/oje.2020.109039⟩
Article dans une revue hal-02996331v1

Monitoring human enteric viruses in wastewater and relevance to infections encountered in the clinical setting: a one-year experiment in central France, 2014 to 2015

 Maxime Bisseux , Jonathan Colombet , Audrey Mirand , Anne-Marie Roque-Afonso , Florence Legrand-Abravanel , et al.
Eurosurveillance, 2018, 23 (7), ⟨10.2807/1560-7917.ES.2018.23.7.17-00237⟩
Article dans une revue hal-01734503v1

Viral and microbial diversity in a Sphagnum-dominated peatland using metagenomics

 Flore Ballaud , Alexis Dufresne , Andre-Jean Francez , Jonathan Colombet , Télesphore Sime-Ngando , et al.
Colloque Génomique Environnementale ‘Diversité, évolution et fonctionnement du vivant à l’ère des nouvelles technologies de séquençage’, Aug 2013, Rennes, France
Poster de conférence hal-01159031v1

Differential localization and functional specialization of centrin analogs in the parasitic ciliate Trichodina pediculus

 Bernard Vigues , Jonathan Colombet , Raghida Damaj
Protoplasma, 2016, 253 (5), pp.1385-1388
Article dans une revue hal-01984022v1

Analysis of metagenomic data reveals common features of halophilic viral communities across continents

 Simon Roux , Francois Enault , Viviane Ravet , Jonathan Colombet , Yvan Bettarel , et al.
Environmental Microbiology, 2016, 18 (3), pp.889 - 903. ⟨10.1111/1462-2920.13084⟩
Article dans une revue istex pasteur-01375524v1

Molecular Diversity Studies in Lake Pavin Reveal the Ecological Importance of Parasitic True Fungi in the Plankton

 Serena Rasconi , Télesphore Sime-Ngando , Mélanie Gerphagnon , Jonathan Colombet , Marlène Jobard , et al.
Lake Pavin, Springer International Publishing, 2016
Chapitre d'ouvrage hal-02947544v1
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Dynamics of Viral Abundance and Diversity in a Sphagnum-Dominated Peatland: Temporal Fluctuations Prevail Over Habitat

 Flore Ballaud , Alexis Dufresne , Andre-Jean Francez , Jonathan Colombet , Télesphore Sime-Ngando , et al.
Frontiers in Microbiology, 2016, 6, pp.1494. ⟨10.3389/fmicb.2015.01494⟩
Article dans une revue hal-01263117v1

Co-occurrence of microcystin and anatoxin-a in the freshwater lake Aydat (France): analytical and molecular approaches during a three-year survey.

 Marion Sabart , Kristell Crenna , Fanny Perrière , Angélique Abila , Martin Leremboure , et al.
Harmful Algae, 2015, 48, pp.12-20. ⟨10.1016/j.hal.2015.06.007⟩
Article dans une revue hal-01206079v1

Abundance and observations of thermophilic microbial and viral communities in submarine and terrestrial hot fluid systems of the French Southern and Antarctic Lands

 Kaarle Parikka , Stéphan Jacquet , Jonathan Colombet , Damien Guillaume , Marc Le Romancer
Polar Biology, 2018, 41 (7), pp.1335 - 1352. ⟨10.1007/s00300-018-2288-3⟩
Article dans une revue hal-01931282v1

Spatial and temporal changes of parasitic chytrids of cyanobacteria

 Mélanie Gerphagnon , Jonathan Colombet , Delphine Latour , Télesphore Sime-Ngando
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-06273-1⟩
Article dans une revue hal-01624036v1

Molecular tools to detect anatoxin-a genes in aquatic ecosystems: Toward a new nested PCR-based method

 Benjamin Legrand , Jerome Lesobre , Jonathan Colombet , Delphine Latour , Marion Sabart
Harmful Algae, 2016, 58, ⟨10.1016/j.hal.2016.07.002⟩
Article dans une revue hal-01360406v1
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Functional diversity of microbial eukaryotes in a meromictic lake: Coupling between metatranscriptomic and a trait‐based approach

 Arthur Monjot , Gisèle Bronner , Damien Courtine , Corinne Cruaud , Corinne da Silva , et al.
Environmental Microbiology, In press, ⟨10.1111/1462-2920.16531⟩
Article dans une revue hal-04273967v1

Unexpected and novel putative viruses in the sediments of a deep-dark permanently anoxic freshwater habitat.

 Guillaume Borrel , Jonathan Colombet , Agnès Robin , Anne-Catherine Lehours , David Prangishvili , et al.
The International Society of Microbiologial Ecology Journal, 2012, 6 (11), pp.2119-27. ⟨10.1038/ismej.2012.49⟩
Article dans une revue hal-00819247v1

A Double Staining Method Using SYTOX Green and Calcofluor White for Studying Fungal Parasites of Phytoplankton.

 Mélanie Gerphagnon , Delphine Latour , Jonathan Colombet , Télesphore Sime-Ngando
Applied and Environmental Microbiology, 2013, 79 (13), pp.3943-51. ⟨10.1128/AEM.00696-13⟩
Article dans une revue hal-00846159v1

Genotypic, size and morphological diversity of virioplankton in a deep oligomesotrophic freshwater lake (Lac Pavin, France)

 Jonathan Colombet , Agnès Robin , Télesphore Sime-Ngando
Journal of Environmental Sciences, 2017, 53, pp.48 - 59. ⟨10.1016/j.jes.2016.05.016⟩
Article dans une revue hal-01624034v1

Unveiling Crucivirus Diversity by Mining Metagenomic Data

 Ignacio de La Higuera , George Kasun , Ellis Torrance , Alyssa Pratt , Amberlee Maluenda , et al.
mBio, 2020, 11 (5), ⟨10.1128/mBio.01410-20⟩
Article dans une revue hal-02996209v1

Integrated characterization of groundwater contamination in an alluvial system. Case study of Allier alluvial aquifer (Massif Central, France).

 Nabaz Mohammed , Hélène Celle-Jeanton , Isabelle Batisson , Corinne Bardot , Jonathan Colombet , et al.
EGU General Assembly 2013, 2013, Vienna, Austria
Communication dans un congrès hal-00803038v1

Virioplankton distribution and activity in a tropical eutrophicated bay

 Yvan Bettarel , Robert Arfi , Thierry Bouvier , Marc Bouvy , Briand Enora , et al.
Estuarine, Coastal and Shelf Science, 2008, 80 (3), pp.425-429
Article dans une revue hal-00526253v1

Diversity of virus-host systems in hypersaline Lake Retba, Senegal.

 Télesphore Sime-Ngando , Soizick Lucas , Agnès Robin , Kimberly Pause Tucker , Jonathan Colombet , et al.
Environmental Microbiology, 2010, 13 (8), epub ahead of print. ⟨10.1111/j.1462-2920.2010.02323.x⟩
Article dans une revue istex hal-00527107v1

Akinetes May Be Representative of Past Nostocalean Blooms: a Case Study of Their Benthic Spatiotemporal Distribution and Potential for Germination in a Eutrophic Lake

 Benjamin Legrand , Anne-Hélène Le Jeune , Jonathan Colombet , Antoine Thouvenot , Delphine Latour , et al.
Applied and Environmental Microbiology, 2017, 83 (23), ⟨10.1128/AEM.01571-17⟩
Article dans une revue hal-01919183v1

Viral and grazer regulation of prokaryotic growth efficiency in temperate freshwater pelagic environments

 A.S. Pradeep Ram , Jonathan Colombet , Fanny Perrière , Antoine Thouvenot , Télesphore Sime-Ngando
FEMS Microbiology Ecology, 2015, 91 (2), pp.1-12
Article dans une revue hal-01983770v1
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