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Johann Dreo
Expert Research Engineer, Institut Pasteur
45
Documents
Affiliations actuelles
- 300027
Identifiants chercheurs
- johann-dreo
- Arxiv : dreo_j_1
- 0000-0003-2727-9569
- Google Scholar : https://scholar.google.com/citations?user=7OHAAYcAAAAJ&hl=fr&oi=ao
- IdRef : 074703129
Publications
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Reproducible Mapping of Tabular Data into Semantic Knowledge Graphs with OntoWeaver and BioCypher2024
Pré-publication, Document de travail
hal-04509632v1
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MultiZenoTravel: a Tunable Benchmark for Multi-Objective Planning with Known Pareto Front2023
Pré-publication, Document de travail
hal-04129698v1
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Democratizing knowledge representation with BioCypher2023
Pré-publication, Document de travail
hal-04135813v1
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Extensible Logging and Empirical Attainment Function for IOHexperimenter2021
Pré-publication, Document de travail
hal-04110714v1
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Generalized fast marching method for computing highest threatening trajectories with curvature constraints and detection ambiguities in distance and radial speed2018
Pré-publication, Document de travail
hal-01981955v2
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Quantile-like measures on multi-dimensional distributions of closed setsDoctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2023
Cours
hal-04110682v1
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AutoML for BioinformaticsDoctoral. Computational Biology Seminars, France. 2022, pp.31
Cours
hal-04125770v1
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Feedback on the use of PDDL solvers in an industrial R&D contextDoctoral. Innovation, Design, and Engineering, Västerås [Sweden], France. 2022
Cours
hal-04110686v1
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De la planification centralisée à l’intelligence en essaim avec des dronesDEUG. Startech, Paris, France. 2022, pp.27
Cours
hal-04110668v1
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Practical Tools for Improving Reproducibility (of Bioinformatics)Doctoral. Precision Medicine at the Interface of Translational Research and Systems Medicine, Paris, France. 2021, pp.37
Cours
hal-04127255v1
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Adaptation de la métaheuristique des colonies de fourmis pour l'optimisation difficile en variables continues. Application en génie biologique et médical.Autre [cs.OH]. Université Paris XII Val de Marne, 2003. Français. ⟨NNT : ⟩
Thèse
tel-00093143v1
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High-level Biomedical Data Integration in a Semantic Knowledge Graph with OncodashKB for finding Personalized Actionable Drugs in Ovarian CancerCancer Genomics, Multiomics and Computational Biology, European Association for Cancer Research, Apr 2024, Bergame, Italy
Communication dans un congrès
hal-04509599v1
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Interplay of Human and AI Solvers on a Planning ProblemIEEE International Conference on Systems, Man, and Cybernetics (SMC), IEEE SMC Society, Oct 2023, Maui (Hawaii), United States
Communication dans un congrès
hal-04116806v1
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Statistical Discovery of Transcriptomic Cancer Signatures using Multimodal Local SearchPGMO Days, Programme Gaspard Monge pour l’Optimisation, la recherche opérationnelle et leurs interactions avec les sciences des données., Nov 2022, Palaiseau, France
Communication dans un congrès
hal-04110700v1
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Tackling Threatening behavior through a Semantic Approach25th International Conference on Information Fusion (FUSION), International Society of Information Fusion, Jul 2022, Linköping, Sweden. ⟨10.23919/FUSION49751.2022.9841333⟩
Communication dans un congrès
hal-04128705v1
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Towards Large Scale Automated Algorithm Design by Integrating Modular Benchmarking FrameworksGenetic and Evolutionary Computation Conference (GECCO 2021), Jul 2021, Lille, France. ⟨10.1145/3449726.3463155⟩
Communication dans un congrès
hal-03233932v1
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Paradiseo: From a Modular Framework for Evolutionary Computation to the Automated Design of MetaheuristicsGECCO 2021 - Genetic and Evolutionary Computation Conference, ACM Sigevo, Jul 2021, Lille / Virtual, France. pp.1522-1530, ⟨10.1145/3449726.3463276⟩
Communication dans un congrès
pasteur-03220556v1
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Towards Explainable Exploratory Landscape Analysis: Extreme Feature Selection for Classifying BBOB FunctionsApplications of Evolutionary Computation (EvoApplications 2021), Apr 2021, Sevilla (Virtual), Spain. pp.17-33, ⟨10.1007/978-3-030-72699-7_2⟩
Communication dans un congrès
hal-03233676v1
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Exploratory Landscape Analysis is Strongly Sensitive to the Sampling StrategyParallel Problem Solving from Nature – PPSN XVI (PPSN 2020), Sep 2020, Leiden, Netherlands. pp.139-153, ⟨10.1007/978-3-030-58115-2_10⟩
Communication dans un congrès
hal-02935385v1
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Making a case for (Hyper-)parameter tuning as benchmark problemsGenetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1755-1764, ⟨10.1145/3319619.3326857⟩
Communication dans un congrès
hal-02179587v1
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Netted Multi-Function Radars Positioning and Modes Selection by Non-Holonomic Fast Marching Computation of Highest Threatening Trajectories & by CMA-ES Optimization2019 International Radar Conference (RADAR), Sep 2019, TOULON, France. pp.1-6, ⟨10.1109/RADAR41533.2019.171285⟩
Communication dans un congrès
hal-03030426v1
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Coupling the design of benchmark with algorithm in landscape-aware solver designGenetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.1419-1420, ⟨10.1145/3319619.3326821⟩
Communication dans un congrès
hal-02179604v1
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Expressiveness and robustness of landscape features (student workshop paper)Genetic and Evolutionary Computation Conference, Companion Material, Jul 2019, Prague, Czech Republic. pp.2048-2051, ⟨10.1145/3319619.3326913⟩
Communication dans un congrès
hal-02179612v1
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Automatic differentiation of non-holonomic fast marching for computing most threatening trajectories under sensors surveillanceInternational Conference on Geometric Science of Information, Nov 2017, Paris, France. pp.791-800
Communication dans un congrès
hal-01503607v1
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Per instance algorithm configuration of CMA-ES with limited budgetGECCO 2017 - Proceedings of the Genetic and Evolutionary Computation Conference , Jul 2017, Berlin, Germany. pp. 681-688
Communication dans un congrès
hal-01613753v1
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Surrogate Assisted Feature Computation for Continuous ProblemsLION 10 Learning and Intelligent OptimizatioN Conference, May 2016, Ischia, Italy. To appear
Communication dans un congrès
hal-01303320v2
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Feature Based Algorithm Configuration: A Case Study with Differential EvolutionParallel Problem Solving from Nature – PPSN XIV, Sep 2016, Edinburgh, France. pp.156-165, ⟨10.1007/978-3-319-45823-6_15⟩
Communication dans un congrès
hal-01359539v1
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Solving Large MultiZenoTravel Benchmarks with Divide-and-EvolveLearning and Intelligent OptimizatioN - LION 9, Jan 2015, Lille, France. pp.262-267
Communication dans un congrès
hal-01109776v1
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Parameter Setting for Multicore CMA-ES with Large PopulationsArtificial Evolution (EA 2015), Oct 2015, Lyon, France. pp.109-122
Communication dans un congrès
hal-01236025v1
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Applying MapReduce principle to High level information fusion17th International Conference on Information Fusion, International Society on Information Fusion, Jul 2014, Salamanca, Spain. pp.1--8
Communication dans un congrès
hal-04139064v1
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Pareto-Based Multiobjective AI PlanningIJCAI 2013, IJCAI/AAAI, Aug 2013, Beijing, China. pp.2321-2327
Communication dans un congrès
hal-00835003v2
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Multi-Objective AI Planning: Comparing Aggregation and Pareto ApproachesEvoCOP -- 13th European Conference on Evolutionary Computation in Combinatorial Optimisation, Apr 2013, Vienna, Austria. pp.202-213, ⟨10.1007/978-3-642-37198-1_18⟩
Communication dans un congrès
hal-00820634v1
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Multi-Objective AI Planning: Evaluating DAE-YAHSP on a Tunable BenchmarkEMO'13 - 7th International Conference on Evolutionary Multi-Criterion Optimization, Mar 2013, Sheffield, United Kingdom. pp.36-50
Communication dans un congrès
hal-00750560v1
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Quality Measures of Parameter Tuning for Aggregated Multi-Objective Temporal PlanningLION7 - Learning and Intelligent OptimizatioN Conference, Jan 2013, Catania, Italy. pp.341-356
Communication dans un congrès
hal-00820617v1
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Results from the Joint Nevergrad and IOHprofiler Open Optimization Competition2021
Article de blog scientifique
hal-04128653v1
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Les fourmis artificielles pour l'optimisation en variables continuesNicolas Monmarché, Frédéric Guinand and Patrick Siarry. Fourmis artificielles, des bases de l'optimisation aux applications industrielles, volume 1, Hermès-Lavoisier, chap. 4, 2009
Chapitre d'ouvrage
hal-01067298v1
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Partial differential equations and variational methods for geometric processing of imagesSMAI Journal of Computational Mathematics, 2019, S5, pp.109-128. ⟨10.5802/smai-jcm.55⟩
Article dans une revue
hal-03030417v1
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Line formation algorithm in a swarm of reactive robots constrained by underwater environmentExpert Systems with Applications, 2015, 42, pp.5117-5127. ⟨10.1016/j.eswa.2015.02.040⟩
Article dans une revue
hal-01120038v1
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Robust rigid registration of retinal angiograms through optimization.Computerized Medical Imaging and Graphics, 2006, 30 (8), pp.453-63. ⟨10.1016/j.compmedimag.2006.07.004⟩
Article dans une revue
inserm-00174430v1
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Method for controlling a set of robots, and set of robotsUnited States, Patent n° : US20150331421. 2015
Brevet
hal-01255219v1
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Randomized Optimization Framework tailored for Benchmarking & Auto-DesignBenchmarked workshop, May 2022, Leiden, France. 2022
Poster de conférence
hal-04110712v1
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UNIX Shell CheatsheetComputational Systems Biomedicine Seminars, Nov 2022, Paris, France
Poster de conférence
hal-04118265v1
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Using Irace, Paradiseo and IOHprofiler for Large-Scale Algorithm Configuration8th COSEAL workshop, Sep 2021, Online, France. 2021
Poster de conférence
hal-04110704v1
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Metaheuristics for hard optimization : methods and case studiesSpringer-Verlag, pp.372, 2006, 978-3-540-23022-9
Ouvrages
hal-01341683v1
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Métaheuristiques pour l'optimisation difficileEYROLLES, pp.356, 2003, Algorithmes, 978-2-212-11368-6
Ouvrages
hal-00843020v1
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