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38

Parcours au sein d'INRAE


Activité :

  • Février 2018 : Mobilité "métiers d'avenir" au sein de l’UR Génomique Info (URGI) 1164 INRAE, Université Paris-Saclay dans l'équipe Analyse des génomes (ANAGEN)

 

  • Octobre 2012 : Mobilité au sein de l’UMR  Biologie et gestion des risques en agriculture (BIOGER) 1290 AgroParisTech, INRAE, Université Paris-Saclay dans l'équipe Evolution et Génomique des Interactions plantes Pathogènes (EGIP)

 

  • Octobre 2006 : Recrutement au sein de l’UMR Biologie et gestion des risques en agriculture (BIOGER) 1290 AgroParisTech, INRAE, Université Paris-Saclay dans l'équipe Antifongiques, Mode d'Action et Résistance (AMAR)


Journal articles9 documents

  • Khouloud Klai, Benoît Chénais, Marwa Zidi, Salma Djebbi, Aurore Caruso, et al.. Screening of Helicoverpa armigera Mobilome Revealed Transposable Element Insertions in Insecticide Resistance Genes. Insects, MDPI, 2020, ⟨10.3390/insects11120879⟩. ⟨hal-03059141⟩
  • Anne Genissel, Johann Confais, Marc-Henri Lebrun, Lilian Gout. Association Genetics in Plant Pathogens: Minding the Gap between the Natural Variation and the Molecular Function. Frontiers in Plant Science, Frontiers, 2017, 8, ⟨10.3389/fpls.2017.01301⟩. ⟨hal-01607896⟩
  • Ziming Zhong, Thierry Marcel, Fanny E. Hartmann, Xin Ma, Clémence Plissonneau, et al.. A small secreted protein in Zymoseptoria tritici is responsible for avirulence on wheat cultivars carrying the Stb6 resistance gene. New Phytologist, Wiley, 2017, 214 (2), pp.619 - 631. ⟨10.1111/nph.14434⟩. ⟨hal-01530838⟩
  • Anne Sophie Walker, Pierre Gladieux, Véronique Decognet, Marc Fermaud, Johann Confais, et al.. Population structure and temporal maintenance of the multihost fungal pathogen Botrytis cinerea: causes and implications for disease management.. Environmental Microbiology, Society for Applied Microbiology and Wiley-Blackwell, 2015, 17 (4), pp.1261-1274. ⟨10.1111/1462-2920.12563⟩. ⟨hal-02638009⟩
  • Angelique Gautier, Thierry Marcel, Johann Confais, C. Crane, G Kema, et al.. Development of a rapid multiplex SSR genotyping method to study populations of the fungal plant pathogen Zymoseptoria tritici. BMC Research Notes, BioMed Central, 2014, 7, p. 373. ⟨10.1186/1756-0500-7-373⟩. ⟨hal-02630016⟩
  • Anne Sophie Walker, Annaig Bouguennec, Johann Confais, Guillaume Morgant, Pierre Leroux. Evidence of host-range expansion from new powdery mildew (Blumeria graminis) infections of triticale (xTriticosecale) in France. Plant Pathology, Wiley, 2011, 60 (02), pp.207-220. ⟨10.1111/j.1365-3059.2010.02379.x⟩. ⟨hal-01000533⟩
  • Anne Sophie Walker, Angelique Gautier, Johann Confais, Daniel Martinho, Muriel Viaud, et al.. Botrytis pseudocinerea, a new cryptic species causing gray mold in french vineyards in sympatry with botrytis cinerea. Phytopathology, American Phytopathological Society, 2011, 101 (12), pp.1433-1445. ⟨10.1094/PHYTO-04-11-0104⟩. ⟨hal-01019801⟩
  • Anne Sophie Walker, Johann Confais, Daniel Martinho, Pierre Leroux. Septoriose et résistance aux fongicides. Enseignements de la saison 2010, notamment concernant les souches émergentes sur blé. Phytoma la Défense des Végétaux, Ruralia/Le Carrousel, 2011, 641 (février), pp.9-11. ⟨hal-01000509⟩
  • Anne Sophie Walker, Annaig Bouguennec, Johann Confais, Guillaume Morgant, Pierre Leroux. Oïdium, le cas triticale est riche d'enseignements. Caractérisation des populations d'oïdium infestant le triticale : révélation d'une nouvelle entité à l'origine de cette maladie émergente, et ses conséquences pour la sélection variétale. Phytoma la Défense des Végétaux, Ruralia/Le Carrousel, 2009, 629 (Décembre), pp.21-25. ⟨hal-00964428⟩

Conference papers21 documents

  • Thierry Marcel, Aurélie Ducasse, Jérome Compain, Nicolas Lapalu, Z Chang Zhong Chen, et al.. A first glimpse into the genetic architecture of pathogenicity of Zymoseptoria tritici on bread wheat. 29. Fungal genetics conference Asilomar 17, Mar 2017, Pacific Grove, CA, United States. p.246. ⟨hal-01530825⟩
  • Johann Confais, Aurélie Ducasse, Anne Genissel, Lilian Gout. Resolution of population structure in the wheat pathogen Zymoseptoria tritici using either 12 or 4000 microsatellite markers. 9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.68. ⟨hal-01531631⟩
  • Anne Genissel, Marie-Pierre Guillot, Johann Confais, Lilian Gout, Marc-Henri Lebrun. The power of GWAS to detect natural genetic variation associated with pathogeny in Zymoseptoria tritici. 9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.17. ⟨hal-01531629⟩
  • Lilian Gout, Johann Confais, M. Massot, Aurélie Ducasse, R. Valade. Population genetic structure and host specialization in the fungal plant pathogen Zymoseptoria tritici. 9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.16. ⟨hal-02799804⟩
  • Romain Valade, Thomas Caparroy, Cindy Vitry, Oriane Beaudouin, Johann Confais, et al.. Leaf blotch on durum wheat in France:characterization of the species complex responsible of the disease with a focus on Parastagonospora nodorum. 9.International symposium on Septoria diseases of cereals, Apr 2016, Paris, France. p.31. ⟨hal-02799258⟩
  • Johann Confais, A. Massot, Aurélie Ducasse, Romain Valade, Lilian Gout. Spécialisation d’hôte et structuration des populations de Zymoseptoria tritici. Journées Jean Chevaugeon 2016 (JJC) - 11èmes Rencontres de Phytopathologie - Mycologie, Société Française de Phytopathologie (SFP), Jan 2016, Aussois, France. p.15. ⟨hal-02796908⟩
  • Johann Confais, Lilian Gout, Marie Massot. Host specialization and structure of Mycosphaerella graminicola populations. Mycosphaerella graminicola / Zymoseptoria tritici European Workshop, Sep 2014, exeter, United Kingdom. ⟨hal-02793825⟩
  • Johann Confais, Houda Fartoun, Lilian Gout, Marc-Henri Lebrun, Thierry Marcel. Expression profiles of Mycosphaerella graminicola candidate effector genes. 10es Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2014, Aussois, France. p. 101. ⟨hal-01019611⟩
  • Johann Confais, Lilian Gout, Marie Massot. Spécialisation d’hôte et structure des populations de Mycosphaerella graminicola, agent de la Septoriose du blé. 36ème colloque « Petit pois déridé », Aug 2014, Orsay, France. ⟨hal-01584444⟩
  • Johann Confais. Expression patterns of candidate effector genes. Mycosphaerella graminicola / Zymoseptoria tritici European Workshop, Aug 2013, Harpenden, United Kingdom. ⟨hal-02804080⟩
  • Johann Confais, Daniel Martinho, Anne Sophie Walker. Comparaison de méthodes de suivi de la sensibilité de Botrytis cinerea aux fongicides Carboxamides. 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.87-87. ⟨hal-01000248⟩
  • Selim Omrane, Anne Sophie Walker, Johann Confais, Daniel Martinho, Catherine Lanen, et al.. Experimental strategies to unravel the MDR mechanism in new emergent phenotypes of M. graminicola highly resistant to several DMIs. 8. International Symposium on Mycosphaerella and Stagonospora Diseases of Cereals, Sep 2011, Mexico, Mexico. pp.38. ⟨hal-01019310⟩
  • Anne Sophie Walker, Johann Confais, Daniel Martinho, G. Couleaud, G. Beauvallet, et al.. Recent evolution of fungicide resistance in French populations of Mycosphaerella graminicola. Crop protection in Southern Britain A.o.A. Biologists, Feb 2011, Cambridge, United Kingdom. ⟨hal-02748327⟩
  • Anne Sophie Walker, Johann Confais, Daniel Martinho, Selim Omrane, Pierre Leroux. Evolution of resistance to fungicides in populations of Mycosphaerella graminicola:emergence of new phenotypes highly resistant to DMIs. EPPO Workshop on Azole fungicides and Septoria leaf blotch control, Dec 2010, harpenden, United Kingdom. ⟨hal-02814825⟩
  • Anne Sophie Walker, Annaig Bouguennec, Johann Confais, Guillaume Morgant, Pierre Leroux. Characterisation of French powdery mildew populations infecting triticale. 9ème conférence internationale sur les maladies des plantes, Dec 2009, Tours, France. ⟨hal-02751721⟩
  • Anne Sophie Walker, Véronique Decognet, Marc Fermaud, Alexandre Bout, Johann Confais, et al.. Genetic diversity and structuring factors for Botrytis cinerea french populations. 7. Journées Jean Chevaugeon, Jan 2008, Aussois, France. ⟨hal-02753395⟩
  • Catherine Lanen, Johann Confais, Christiane Auclair, Sabine, Helma Fillinger-David. Use of replicative genomic libraries to clone fungicide resistance alleles. 3rd Botrytis Genome Workshop, Sep 2008, Tenerife, Spain. ⟨hal-02819504⟩
  • Anne Sophie Walker, Johann Confais, Pierre Leroux, Laurence Bill, Véronique Decognet, et al.. Resistance to fungicides and genetic diversity among Botrytis cinerea populations. Abstract. 14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa. ⟨hal-02757498⟩
  • Anne Sophie Walker, Véronique Decognet, Marc Fermaud, Alexandre Bout, Johann Confais, et al.. Genetic diversity and structuring factors for Botrytis cinerea french populations. 14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa. ⟨hal-02757549⟩
  • Elisabeth Fournier, Johann Confais, Véronique Decognet, Marc Fermaud, Alexandre Bout, et al.. Effect of host plants on sympatric genetic differentiations in french populations of Botrytis cinerea. Abstract. 14. International Botrytis Symposium, Oct 2007, Cape Town, South Africa. ⟨hal-02756534⟩
  • Johann Confais, Charles Vincent, Benoit Rancourt. Feeding behavior of neonate oblique banded leafroller: determination of ingested volumes by fluorescence spectroscopy. 50th Annual Meeting of the Entomological Society of America, Nov 2002, Fort Lauderdale, United States. ⟨hal-02828735⟩

Poster communications7 documents

  • Johann Confais, Aurélie Ducasse, Anne Genissel, Lilian Gout. Resolution provided by microsatellite markers in detecting population structure of the wheat pathogen Zymoseptoria tritici. ECFG13. European conference on fungal genetics, Apr 2016, PARIS LA VILLETTE, France. p.515, 2016. ⟨hal-02794992⟩
  • Lilian Gout, Johann Confais, Marie Massot, Aurélie Ducasse, Romain Valade. Population genetic structure and host specialization in the fungal plant pathogen Zymoseptoria tritici. ECFG13 European conference on fungal genetic, 2016, PARIS LA VILLETTE, France. p.275, 2016. ⟨hal-02800481⟩
  • Johann Confais, Lilian Gout, Marie Massot. Spécialisation d’hôte et structure des populations de Mycosphaerella graminicola, agent de la Septoriose du blé. 36ème colloque « Petit pois déridé », Aug 2015, orsay, France. 2014. ⟨hal-02798252⟩
  • Johann Confais, Houda Fartoun, Elisabetta Marchegiani, Lilian Gout, Thierry Marcel, et al.. Expression profiles of Mycosphaerella graminicola effector genes highlight a succession of different infectious strategies during wheat leaves colonization. The 7. Effectome meeting, Oct 2014, Lauret, France. 2014. ⟨hal-02801317⟩
  • Johann Confais. Expression profiles of Mycosphaerella graminicola candidate effector genes. effectome, Sep 2013, lauret, France. 2013. ⟨hal-02804228⟩
  • Anne Sophie Walker, Angelique Gautier, Johann Confais, Muriel Viaud, Pascal Le Pecheur, et al.. Botrytis pseudocinerea, a new cryptic species causing grey mould in French vineyards in symatry with Botrytis cinerea. 26. Fungal Genetics Conference at Asilomar, Mar 2011, pacific grove, United States. 2011. ⟨hal-02745749⟩
  • Selim Omrane, Anne Sophie Walker, Johann Confais, Daniel Martinho, Gilles Couleaud, et al.. Characterization of emergent Septoria tritici isolates highly resistant to DMIs: efficacy of fungicides strategies and future insights. EPPO Workshop on Azole fungicides and Septoria leaf blotch control, Dec 2010, Harpenden, United Kingdom. 2010. ⟨hal-02822450⟩

Software1 document

  • Veronique Jamilloux, Françoise Alfama-Depauw, Johann Confais, Mariène Wan, Agnes Baud, et al.. REPET v3.0. 2019. ⟨hal-02790461⟩