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Diffusion MRI simulation of realistic neurons with SpinDoctor and the Neuron Module

Chengran Fang , Van-Dang Nguyen , Demian Wassermann , Jing-Rebecca Li
NeuroImage, 2020, 222, pp.117198. ⟨10.1016/j.neuroimage.2020.117198⟩
Article dans une revue hal-03153139v1
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A macroscopic model including membrane exchange for diffusion MRI

Julien Coatléven , Houssem Haddar , Jing-Rebecca Li
SIAM Journal on Applied Mathematics, 2014, 74, 2, pp.516-546. ⟨10.1137/130914255⟩
Article dans une revue hal-00768732v4
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New ODE Model for Diffusion MRI Signal

Hang Tuan Nguyen , Jing-Rebecca Li , Denis S. Grebenkov
MRPM11, Sep 2012, Surrey, United Kingdom
Communication dans un congrès hal-00764195v1

Portable simulation framework for diffusion MRI

Van-Dang Nguyen , Massimiliano de Leoni , Tamara Dancheva , Johan Jansson , Johan Hoffman , et al.
Journal of Magnetic Resonance, 2019, 309, pp.106611. ⟨10.1016/j.jmr.2019.106611⟩
Article dans une revue hal-02431598v1
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Apparent diffusion coefficient measured by diffusion MRI of moving and deforming domains

Imen Mekkaoui , Jerome Pousin , Jan Hesthaven , Jing-Rebecca Li
Journal of Magnetic Resonance, 2020, 318, pp.106809. ⟨10.1016/j.jmr.2020.106809⟩
Article dans une revue hal-03153152v1
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Analytical and numerical study of the apparent diffusion coefficient in diffusion MRI at long diffusion times and low b-values

Jing-Rebecca Li , Denis Le Bihan , Thong Quoc Nguyen , Denis S Grebenkov , Cyril Poupon , et al.
2012
Pré-publication, Document de travail hal-00763885v1

A fast random walk algorithm for computing diffusion-weighted NMR signals in multi-scale porous media: A feasibility study for a Menger sponge

Denis S Grebenkov , Hang Tuan Nguyen , Jing-Rebecca Li
Microporous and Mesoporous Materials, 2013, ⟨10.1016/j.micromeso.2013.02.040⟩
Article dans une revue istex hal-00925065v1
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Numerical simulation of diffusion MRI signals using an adaptive time-stepping method

Jing-Rebecca Li , Donna Calhoun , Cyril Poupon , Denis Le Bihan
Physics in Medicine and Biology, 2013, ⟨10.1088/0031-9155/59/2/441⟩
Article dans une revue hal-00763888v2
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Using Salomé to reproduce the structure and to observe the diffusion of water molecules in biological tissue

Dang Van Nguyen , Denis S Grebenkov , Jing-Rebecca Li
2012
Pré-publication, Document de travail hal-00764328v1

Microstructural organization of human insula is linked to its macrofunctional circuitry and predicts cognitive control

Vinod Menon , Guillermo Gallardo , Mark Pinsk , Van-Dang Nguyen , Jing-Rebecca Li , et al.
Article dans une revue hal-02864084v1

A partition of unity finite element method for computational diffusion MRI

Van-Dang Nguyen , Johan Jansson , Johan Hoffman , Jing-Rebecca Li
Journal of Computational Physics, 2018, 375, pp.271-290
Article dans une revue hal-01969367v1
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Diffusion MRI simulation of realistic neurons with SpinDoctor and the Neuron Module, ISMRM poster

Van-Dang Nguyen , Chengran Fang , Demian Wassermann , Jing-Rebecca Li
ISMRM 2020 - 28th Annual Meeting & Exhibition, Apr 2020, Sydney, Australia
Poster de conférence hal-02477492v1

Three-dimensional micro-structurally informed in silico myocardium—Towards virtual imaging trials in cardiac diffusion weighted MRI

Mojtaba Lashgari , Nishant Ravikumar , Irvin Teh , Jing-Rebecca Li , David Buckley , et al.
Medical Image Analysis, 2022, 82, pp.102592. ⟨10.1016/j.media.2022.102592⟩
Article dans une revue hal-03912441v1

Practical computation of the diffusion MRI signal of realistic neurons based on Laplace eigenfunctions

Jing-Rebecca Li , Try Nguyen Tran , Van‐dang Nguyen
NMR in Biomedicine, 2020, 33 (10), ⟨10.1002/nbm.4353⟩
Article dans une revue hal-03153120v1
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A second order asymptotic model for diffusion MRI in permeable media

Marwa Kchaou , Jing-Rebecca Li
ESAIM: Mathematical Modelling and Numerical Analysis, 2023, 57 (4), pp.1953-1980. ⟨10.1051/m2an/2023043⟩
Article dans une revue hal-04149697v1

Numerical solution of large-scale Lyapunov equations, Riccati equations, and linear-quadratic optimal control problems

Peter Benner , Jing-Rebecca Li , Thilo Penzl
Numerical Linear Algebra with Applications, 2008, 15 (9), pp.755-777. ⟨10.1002/nla.622⟩
Article dans une revue hal-00781119v1

Low order approximation of the spherical nonreflecting boundary kernel for the wave equation

Jing-Rebecca Li
Linear Algebra and its Applications, 2003
Article dans une revue hal-00781117v1

Adapting the Kärger model to account for finite diffusion-encoding pulses in diffusion MRI

Houssem Haddar , Jing-Rebecca Li , Simona Schiavi
IMA Journal of Applied Mathematics, 2016, ⟨10.1093/imamat/hxw032⟩
Article dans une revue hal-01217560v1

Diffusion Microscopist Simulator: A General Monte Carlo Simulation System for Diffusion Magnetic Resonance Imaging

Chun-Hung Yeh , Benoit Schmitt , Denis Le Bihan , Jing-Rebecca Li , Ching-Po Lin , et al.
Article dans une revue hal-00925091v1
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A fast random walk algorithm for computing diffusion-weighted NMR signals in multiscale porous media: a feasibility study for a Menger sponge

Denis S. Grebenkov , Hang Tuan Nguyen , Jing-Rebecca Li
2012
Pré-publication, Document de travail hal-00764179v1
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SpinDoctor: A MATLAB toolbox for diffusion MRI simulation

Jing-Rebecca Li , Van-Dang Nguyen , Try Nguyen Tran , Jan Valdman , Cong-Bang Trang , et al.
NeuroImage, 2019, 202, pp.116120. ⟨10.1016/j.neuroimage.2019.116120⟩
Article dans une revue hal-02431597v1

The time-dependent diffusivity in the abdominal ganglion of Aplysia californica: experiments and simulations

Khieu Van Nguyen , Denis Le Bihan , Luisa Ciobanu , Jing-Rebecca Li
Biomedical Physics & Engineering Express, 2019, 5 (4), pp.045036. ⟨10.1088/2057-1976/ab301e⟩
Article dans une revue hal-02431596v1

Practical computation of the diffusion MRI signal based on Laplace eigenfunctions: permeable interfaces

Syver Døving Agdestein , Try Nguyen Tran , Jing‐rebecca Li
NMR in Biomedicine, 2021, ⟨10.1002/nbm.4646⟩
Article dans une revue hal-03477416v1

Incorporating interface permeability into the diffusion MRI signal representation while using impermeable Laplace eigenfunctions

Zheyi Yang , Chengran Fang , Jing-Rebecca Li
Physics in Medicine and Biology, 2023, 68 (17), pp.175036. ⟨10.1088/1361-6560/acf022⟩
Article dans une revue hal-04254331v1
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A simulation-driven supervised learning framework to estimate brain microstructure using diffusion MRI

Chengran Fang , Zheyi Yang , Demian Wassermann , Jing-Rebecca Li
Medical Image Analysis, 2023, 90, pp.102979. ⟨10.1016/j.media.2023.102979⟩
Article dans une revue hal-04254343v1

Efficient solution of a wave equation with fractional order dissipative terms

Houssem Haddar , Jing-Rebecca Li , Denis Matignon
Journal of Computational and Applied Mathematics, 2009, 234 (6), pp.2003-2010. ⟨10.1016/j.cam.2009.08.051⟩
Article dans une revue hal-00743823v1
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Asymptotic models of the diffusion MRI signal accounting for geometrical deformations

Zheyi Yang , Imen Mekkaoui , Jan Hesthaven , Jing-Rebecca Li
MathematicS In Action, 2023, 12 (1), pp.65-85. ⟨10.5802/msia.32⟩
Article dans une revue hal-03939649v1
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Effective Diffusion Tensor Computed by Homogenization

Dang Van Nguyen , Jing-Rebecca Li , Denis S Grebenkov , Cyril Poupon , Denis Le Bihan
ISMRM 2012, May 2012, Melbourne, Australia
Communication dans un congrès hal-00764291v1

Sensing Von Economo Neurons in the Insula with Multi-shell Diffusion MRI

Demian Wassermann , Dang Van Nguyen , Guillermo Gallardo , Jing-Rebecca Li , Weidong Cai , et al.
International Society for Magnetic Resonance in Medicine, 2018, Paris, France
Poster de conférence hal-01807704v1

Exploring diffusion across permeable barriers at high gradients. I. Narrow pulse approximation

Denis S Grebenkov , Dang Van Nguyen , Jing-Rebecca Li
Journal of Magnetic Resonance, 2014, pp.153-163. ⟨10.1016/j.jmr.2014.07.013⟩
Article dans une revue hal-01111053v1