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Number of documents

26

Publications Jérémy Tournayre


Journal articles7 documents

  • Isabelle Cassar-Malek, Lise Pomiès, Anne de la Foye, Jérémy Tournayre, Céline Boby, et al.. Transcriptome profiling reveals stress-responsive gene networks in cattle muscles. PeerJ, PeerJ, 2022, 10, pp.e13150. ⟨10.7717/peerj.13150⟩. ⟨hal-03632213⟩
  • Yuki Muranishi, Laurent Parry, Mélanie Vachette-Dit-Martin, Fabrice Saez, Cécile Coudy-Gandilhon, et al.. When idiopathic male infertility is rooted in maternal malnutrition during the perinatal period in mice. Biology of Reproduction, Society for the Study of Reproduction, 2021, ⟨10.1093/biolre/ioab222⟩. ⟨hal-03474813⟩
  • Jérémy Tournayre, Matthieu Reichstadt, Laurent Parry, Pierre Fafournoux, Céline Jousse. "Do my qPCR calculation", a web tool. Bioinformation, 2019, 15 (5), pp.369-372. ⟨10.6026/97320630015369⟩. ⟨hal-02172518⟩
  • Muriel Bonnet, Jérémy Tournayre, Isabelle Cassar-Malek. Integrated data mining of transcriptomic and proteomic datasets to predict the secretome of adipose tissue and muscle in ruminants. Molecular BioSystems, Royal Society of Chemistry, 2016, 12 (9), pp.2722-2734. ⟨10.1039/c6mb00224b⟩. ⟨hal-02638660⟩
  • Nicolas Kaspric, Matthieu Reichstadt, Brigitte Picard, Jérémy Tournayre, Muriel Bonnet. Protein function easily investigated by genomics data mining using the proteINSIDE online tool. Genomics and Computational Biology, 2015, 1 (1), pp.e16. ⟨10.18547/gcb.2015.vol1.iss1.e16⟩. ⟨hal-02631468⟩
  • Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jérémy Tournayre, Muriel Bonnet. ProteINSIDE to easily investigate proteomics data from ruminants: Application to mine proteome of adipose and muscle tissues in bovine foetuses. PLoS ONE, Public Library of Science, 2015, 10 (5), pp.e0128086. ⟨10.1371/journal.pone.0128086⟩. ⟨hal-02635637⟩
  • Simon Roux, Jérémy Tournayre, Antoine Mahul, Didier Debroas, François Enault. Metavir 2: new tools for viral metagenome comparison and assembled virome analysis.. BMC Bioinformatics, BioMed Central, 2014, 15, pp.76. ⟨10.1186/1471-2105-15-76⟩. ⟨hal-01017832⟩

Conference papers12 documents

  • Manon Connault, Jérémy Tournayre, Céline Boby, Muriel Bonnet, Nadia Goué. Talkmine, a workflow for the prediction of the interactions between secretome and surfaceome in the dialogue between cellular types. JOBIM, Jul 2021, Paris - (Congrès virtuel), France. ⟨hal-03332116⟩
  • Jérémy Tournayre, Pablo Guarnido, Dominique Graviou, Faure Pascal, Gonzalo Cantalapiedra-Hijar, et al.. Investigating the effect of divergent residual feed intake phenotypes on the bovine rumen microbiota across contrasting diet in fattening bulls. 12. International Symposium on Gut Microbiology, INRAE ; Rowett Institute UK, Oct 2021, En ligne, France. ⟨hal-03395905⟩
  • Jérémy Tournayre, Céline Boby, Matthieu Reichstadt, Muriel Bonnet. Update of ProteINSIDE: an online tool for proteome data mining. JOBIM, Jul 2021, Paris - (Congrès virtuel), France. ⟨hal-03283757⟩
  • Jérémy Tournayre. Identification de marques épigénétiques marqueurs de prédisposition aux maladies métaboliques. 22. Journée de l’Ecole Doctorale Sciences de la vie, Santé, Agronomie & Environnement JED 2019, May 2019, Clermont-Ferrand, France. ⟨hal-02161575⟩
  • Jérémy Tournayre, Laurent Parry, Anne-Catherine Maurin, Julien Averous, Alain Bruhat, et al.. Identification de marques épigénétiques marqueurs de prédisposition aux maladies métaboliques. JOBIM 2018 Journées Ouvertes Biologie, Informatique et Mathématiques, Jul 2018, Marseille, France. ⟨hal-01930383⟩
  • Jérémy Tournayre, Isabelle Cassar-Malek, Matthieu Reichstadt, Brigitte Picard, Nicolas Kaspric, et al.. Intégration de données "omics" provenant du tissu adipeux ou musculaire. Journée AuDACES : Auvergne Développements et Calcul en Environnement Scientifique, May 2016, Clermont-Ferrand, France. ⟨hal-02801646⟩
  • Jérémy Tournayre, Isabelle Cassar-Malek, Matthieu Reichstadt, Brigitte Picard, Nicolas Kaspric, et al.. Fat&MuscleDB: A database to understand tissue growth processes contributing to body or muscle composition. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. ⟨hal-02739407⟩
  • Nicolas Kaspric, Matthieu Reichstadt, Brigitte Picard, Jérémy Tournayre, Muriel Bonnet. Proteome data mining using ProteINSIDE online tool. JOBIM 2015 - Journées Ouvertes Biologie Informatique Mathématiques, Jul 2015, Clermont-Ferrand, France. 1 p. ⟨hal-02740479⟩
  • Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jérémy Tournayre, Muriel Bonnet. Protein function easily investigated by genomics data mining using the ProteINSIDE web service. 2. International Work-Conference on Bioinformatics and Biomedical Engineering (IWBBIO), Apr 2014, Grenade, Spain. ⟨hal-02743910⟩
  • Isabelle Cassar-Malek, Brigitte Picard, Alain Boissy, Christine Leroux, Lenha Mobuchon, et al.. Exploiting the knowledge about model species and humans to revisit the biology of livestock animals. Workshop of translational biology in Agriculture and Medecine ‘From Bench to Bed in Medecine and from Pot to Plot in Agriculture', Institut National de Recherche Agronomique (INRA). UMR Génétique Diversité et Ecophysiologie des Céréales (1095)., Oct 2014, Aubière, France. 1 p. ⟨hal-02799064⟩
  • Jérémy Tournayre, Isabelle Cassar-Malek, Matthieu Reichstadt, Brigitte Picard, Nicolas Kaspric, et al.. Fat and Muscle DB: integrating ‘omics’ data from adipose tissue and muscle. 5. Management Committee Meeting and the 4. Meeting of Working Groups 1, 2, 3 of COST Action FA 1002, Nov 2014, Milan, Italy. pp.91-94. ⟨hal-02739418⟩
  • Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jérémy Tournayre, Muriel Bonnet. L’étude des protéomes de ruminants facilitée par l’utilisation du web service ProteINSIDE. Journée AuDACES : Auvergne Développements et Calcul en Environnement Scientifique, Jun 2014, Clermont-Ferrand, France. ⟨hal-02800842⟩

Poster communications5 documents

  • Manon Connault,, Jérémy Tournayre, Céline Boby, Muriel Bonnet, Nadia Goue. Talkmine, a workflow for the prediction of the interactions between secretome and surfaceome in the dialogue between cellular types. JOBIM, Jul 2021, Paris - (Congrès virtuel), France. ⟨hal-03332138v2⟩
  • Jérémy Tournayre, Céline Boby, Matthieu Reichstadt, Muriel Bonnet. Update of ProteINSIDE: an online tool for proteome data mining. JOBIM, Jul 2021, Paris - (Congrès virtuel), France. ⟨hal-03283142⟩
  • Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jérémy Tournayre, Muriel Bonnet. Proteomics data from ruminants easily investigated using ProteINSIDE. 5. Management Committee Meeting and the 4. Meeting of Working Groups 1, 2, 3 of COST Action FA 1002, Nov 2014, Milan, Italy. pp.283-287, 2014. ⟨hal-02743404⟩
  • Nicolas Kaspric, Matthieu Reichstadt, Brigitte Picard, Muriel Bonnet, Jérémy Tournayre. ProteINSIDE: a web service to computerize an in-depth analysis of functions, sequences, secretions and interactions for proteins. 11. Meeting on Research in Computational Molecular Biology (RECOMB) Comparative Genomics, Oct 2013, Lyon, France. pp.32, 2013, Proceedings of Eleventh Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics, Lyon, France, 17-19 October 2013. ⟨hal-02746269⟩
  • Jérémy Tournayre, Matthieu Reichstadt, Isabelle Cassar-Malek, Brigitte Picard, Muriel Bonnet. Proteotools : Un outil d'annotation, d'ontologie et d'enrichissement de données de génomique pour l'identification de marqueurs du rendement de carcasse. Lifegrid : journée - L’informatique au service des Sciences du Vivant et de la Santé, Dec 2013, Aubière, France. pp.2, 2013. ⟨hal-01196476⟩

Preprints, Working Papers, ...1 document

  • Yuki Muranishi, Laurent Parry, Mélanie Vachette-Dit-Martin, Fabrice Saez, Cécile Coudy-Gandilhon, et al.. Maternal nutritional stress alters sperm competence in male mice offspring leading to reduced fertility. 2021. ⟨hal-03434028⟩

Software1 document

  • Nicolas Kaspric, Brigitte Picard, Matthieu Reichstadt, Jérémy Tournayre, Muriel Bonnet. ProteINSIDE https://www.proteinside.org/. 2015. ⟨hal-02794560⟩