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A model of apoptosis receptor reactions to study cell fate decision

Luis Gomes-Pereira , Madalena Chaves , Jérémie Roux
MED 2020 - 28th Mediterranean Conference on Control and Automation, Sep 2020, Saint Raphaël, France. pp.887-892, ⟨10.1109/MED48518.2020.9183229⟩
Communication dans un congrès hal-03021507v2
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Modeling isogenic cancer cell response upon TRAIL treatment in multi-omics studies

Marielle Péré , Asma Chalabi , Jérémie Roux
Multiple facets of RNA in development and disease conference, Signalife Labex community, Mar 2022, Nice, France
Communication dans un congrès hal-03868569v1

Source-Target Proximity Analysis in Protein Networks Using Random Walks with Restart; Applications to Cancer Drug Resistance Prediction from Single-Cell Data

Frédéric Cazals , Jérémie Roux , Alain Jean-Marie , Dorian Mazauric , Guilherme Sales Santa Cruz
SophI.A 2019 - Springboard for Artificial Intelligence, Université Côte d'Azur, Nov 2019, Sophia-Antipolis, France
Communication dans un congrès hal-02432552v1
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Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses

Augusto Sales-De-Queiroz , Guilherme Sales Santa Cruz , Alain Jean-Marie , Dorian Mazauric , Jérémie Roux , et al.
2021
Pré-publication, Document de travail hal-03438430v1
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Two-level modeling approach to identify the regulatory dynamics capturing drug response heterogeneity in single-cells

Madalena Chaves , Luis Gomes-Pereira , Jérémie Roux
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-99943-0⟩
Article dans une revue hal-03439255v1
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Coupling live-cell imaging and in situ isolation of the same single cell to profile the transient states of predicted drug-tolerant cells

Benjamin Bian , Agnès Paquet , Marie-Jeanne Arguel , Mickael Meyer , Ludovic Peyre , et al.
STAR Protocols, 2022, 3 (3), pp.101600. ⟨10.1016/j.xpro.2022.101600⟩
Article dans une revue hal-03860511v1

TRAIL-induced apoptosis signaling modeling identifies dynamic signs of efficient cell death initiation, enabling an early prediction of the cell response

Marielle Péré , Madalena Chaves , Jérémie Roux
CMSB 2021 - 19th International Conference on Computational Methods in Systems Biology, Sep 2021, Bordeaux, France
Communication dans un congrès hal-03522480v1
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Autophagy : Moving Benchside Promises to Patient Bedsides

Amine Belaïd , Papa Diogop Ndiaye , Harilaos Filippakis , Jérémie Roux , Eric Röttinger , et al.
Current Cancer Drug Targets, 2015, 15 (8), pp.684-702. ⟨10.2174/156800961508151001102452⟩
Article dans une revue hal-02411388v1
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Modelling cell response to cancer drug treatment identifies dynamic features of efficient cell death initiation, enabling prediction and control of therapeutic response heterogeneity

Marielle Péré , Madalena Chaves , Jérémie Roux
inSiDE seminars (Signaling Dynamics and Encoding,)Connecting scientists interested in single-cell signaling dynamics, Jun 2022, Online, France
Poster de conférence hal-03868579v1

Modeling cell death dynamics at the receptor level

Luis Pereira , Mickael Meyer , Paul Hofman , Jean-Luc Gouzé , Madalena Chaves , et al.
CompSysBio, Advanced Lecture Course on Computational Systems Biology, Mar 2017, Aussois, France
Communication dans un congrès hal-01568506v1
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Dynamic analysis framework to detect cell division and cell death in live-cell imaging, using signal processing and machine learning

Asma Chalabi , Eric Debreuve , Jérémie Roux
ICSB 2022 - The 21st International Conference on Systems Biology, Oct 2022, Berlin (DE), Germany
Communication dans un congrès hal-03866978v1
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Modeling isogenic cancer cell response upon varying TRAIL stimulations to decipher the kinetic determinants of cell fate decision

Marielle Péré , Diego A. Oyarzun , Jérémie Roux , Madalena Chaves
Foundations of Systems Biology in Engineering (FOSBE), Aug 2022, Cambridge, Massachusetts, United States
Communication dans un congrès hal-03868311v1

Modelling cell-death drug response heterogeneity at the receptor layer

Luis Pereira , Paul Hofman , Jean-Luc Gouzé , Madalena Chaves , Jérémie Roux
11th European Conference on Mathematical and Theoretical Biology (ECMTB 2018), Jul 2018, Lisbon, Portugal
Communication dans un congrès hal-01936435v1
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TRAIL receptor-induced features of epithelial-to-mesenchymal transition increase tumour phenotypic heterogeneity: potential cell survival mechanisms

Ludovic Peyre , Mickael Meyer , Paul Hofman , Jérémie Roux
British Journal of Cancer, 2020, ⟨10.1038/s41416-020-01177-w⟩
Article dans une revue hal-03035316v1
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KRAS and NRAS Translation Is Increased upon MEK Inhibitors-Induced Processing Bodies Dissolution

Olivia Vidal-Cruchez , Victoria Nicolini , Tifenn Rete , Karine Jacquet , Roger Rezzonico , et al.
Cancers, 2023, 15 (12), pp.3078. ⟨10.3390/cancers15123078⟩
Article dans une revue hal-04266131v1
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Integrating machine learning methods to single-cell experimental workflow increases throughput and accuracy for target identification in immuno-oncology

Marielle Péré , Diego Oyarzun , Asma Chalabi , Madalena Chaves , Jérémie Roux
Sophia Summit AI, Nov 2022, Sophia Antipolis, France
Poster de conférence hal-03868554v1
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Gene prioritization based on random walks with restarts and absorbing states, to define gene sets regulating drug pharmacodynamics from single-cell analyses

Augusto Sales de Queiroz , Guilherme Sales Santa Cruz , Alain Jean-Marie , Dorian Mazauric , Jérémie Roux , et al.
PLoS ONE, 2022, 17 (11), pp.e0268956. ⟨10.1371/journal.pone.0268956⟩
Article dans une revue hal-04266133v1
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L’hétérogénéité intraclonale des tumeurs et son impact sur la médecine de précision

Jérémie Roux , Jean-Luc Gouzé , Paul Hofman
Médecine/Sciences, 2015, 31 (1), pp.28-31. ⟨10.1051/medsci/20153101009⟩
Article dans une revue hal-01259249v1
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Core Models of Receptor Reactions to Evaluate Basic Pathway Designs Enabling Heterogeneous Commitments to Apoptosis

Marielle Péré , Madalena Chaves , Jérémie Roux
CMSB 2020 - 18th International Conference on Computational Methods in Systems Biology, Sep 2020, Konstanz, Germany. pp.298-320, ⟨10.1007/978-3-030-60327-4_16⟩
Communication dans un congrès hal-03021538v1
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Profiling the Non-genetic Origins of Cancer Drug Resistance with a Single-Cell Functional Genomics Approach Using Predictive Cell Dynamics

Mickael Meyer , Agnès Paquet , Marie-Jeanne Arguel , Ludovic Peyre , Luis Gomes-Pereira , et al.
Cell Systems, 2020, 11 (4), pp.367-374. ⟨10.1016/j.cels.2020.08.019⟩
Article dans une revue hal-03001650v1