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Quantification of Image Data

Jean-Yves Tinevez
Ann Wheeler; Ricardo Henriques. Standard and Super-Resolution Bioimaging Data Analysis : a primer, John Wiley & Sons, Ltd, pp.31-46, 2017, 9781119096900. ⟨10.1002/9781119096948.ch2⟩
Chapitre d'ouvrage pasteur-02624203v1

Fiji: an open-source platform for biological-image analysis

Johannes Schindelin , Ignacio Arganda-Carreras , Erwin Frise , Verena Kaynig , Mark Longair , et al.
Nature Methods, 2012, 9 (7), pp.676-682. ⟨10.1038/nmeth.2019⟩
Article dans une revue pasteur-02616466v1
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Molecular organization and mechanics of single vimentin filaments revealed by super-resolution imaging

Filipe Nunes , Mickael Lelek , Jean-Yves Tinevez , Quang D. Tran , Gerard Pehau-Arnaudet , et al.
Science Advances , 2022, ⟨10.1101/2021.09.07.459174⟩
Article dans une revue hal-03366936v2
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Multi-view light-sheet imaging and tracking with the MaMuT software reveals the cell lineage of a direct developing arthropod limb

Carsten Wolff , Jean-Yves Tinevez , Tobias Pietzsch , Evangelia Stamataki , Benjamin Harich , et al.
eLife, 2018, 7, pp.e34410. ⟨10.7554/eLife.34410⟩
Article dans une revue pasteur-02616453v1
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Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization

Jean-Yves Tinevez , Ellen T Arena , Mark Anderson , Giulia Nigro , Louise Injarabian , et al.
Nature Microbiology, 2019, 4 (11), pp.2001-2009. ⟨10.1038/s41564-019-0525-3⟩
Article dans une revue hal-02402067v1

Role of cortical tension in bleb growth

Jean-Yves Tinevez , Ulrike Schulze , Guillaume Salbreux , Julia Roensch , Jean-François Joanny , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2009, 106 (44), pp.18581-18586. ⟨10.1073/pnas.0903353106⟩
Article dans une revue pasteur-02616474v1

Bioimage analysis of Shigella infection reveals targeting of colonic crypts

Ellen T Arena , François-Xavier Campbell-Valois , Jean-Yves Tinevez , Giulia Nigro , Martin Sachse , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2015, 112 (25), pp.E3282-E3290. ⟨10.1073/pnas.1509091112⟩
Article dans une revue pasteur-02616457v1

Strategies of professional phagocytes in vivo: unlike macrophages, neutrophils engulf only surface-associated microbes

Emma Colucci-Guyon , Jean-Yves Tinevez , Stephen Renshaw , Philippe Herbomel
Journal of Cell Science, 2011, 124 (18), pp.3053-3059. ⟨10.1242/jcs.082792⟩
Article dans une revue pasteur-02616471v1
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Crumbs Affects Protein Dynamics In Anterior Regions Of The Developing Drosophila Embryo

Joao Firmino , Jean-Yves Tinevez , Elisabeth Knust
PLoS ONE, 2013, 8 (3), pp.e58839. ⟨10.1371/journal.pone.0058839⟩
Article dans une revue pasteur-02616461v1

Three-dimensional Quantification of Dendritic Spines from Pyramidal Neurons Derived from Human Induced Pluripotent Stem Cells.

Laura Gouder , Jean-Yves Tinevez , Hany Goubran-Botros , Alexandra Benchoua , Thomas Bourgeron , et al.
Journal of visualized experiments : JoVE, 2015, 104, pp.e53197. ⟨10.3791/53197⟩
Article dans une revue pasteur-01578128v1

Fluorescence imaging host pathogen interactions: fifteen years benefit of hindsight…

Nathalie Aulner , Anne Danckaert , Julien Fernandes , Marie-Anne Nicola , Pascal Roux , et al.
Current Opinion in Microbiology, 2018, 43, pp.193-198. ⟨10.1016/j.mib.2018.03.001⟩
Article dans une revue pasteur-02557386v1

Shigella-mediated oxygen depletion is essential for intestinal mucosa colonization

Jean-Yves Tinevez , Ellen Arena , Mark Anderson , Giulia Nigro , Louise Injarabian , et al.
Nature Microbiology, 2019, 4 (11), pp.2001-2009. ⟨10.1038/s41564-019-0525-3⟩
Article dans une revue hal-03087717v1

A Quantitative Method for Measuring Phototoxicity of a Live Cell Imaging Microscope

Jean-Yves Tinevez , Joe Dragavon , Lamya Baba-Aissa , Pascal Roux , Emmanuelle Perret , et al.
P. Michael Conn. Imaging and Spectroscopic Analysis of Living Cells : Imaging Live Cells in Health and Disease, 506, ELSEVIER ACADEMIC PRESS INC, pp.291-309, 2012, Methods in Enzymology, 978-0-12-391856-7. ⟨10.1016/B978-0-12-391856-7.00039-1⟩
Chapitre d'ouvrage hal-01543608v1
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Bidirectional intraflagellar transport is restricted to two sets of microtubule doublets in the trypanosome flagellum

Eloise Bertiaux , Adeline Mallet , Cécile Fort , Thierry Blisnick , Serge Bonnefoy , et al.
Journal of Cell Biology, 2018, ⟨10.1083/jcb.201805030⟩
Article dans une revue pasteur-01931458v1
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Imaging of Red-Shifted Light From Bioluminescent Tumors Using Fluorescence by Unbound Excitation From Luminescence

Fabiane Sônego , Sophie Bouccara , Thomas Pons , Nicolas Lequeux , Anne Danckaert , et al.
Frontiers in Bioengineering and Biotechnology, 2019, 7, ⟨10.3389/fbioe.2019.00073⟩
Article dans une revue pasteur-02092834v1
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MUB40 Binds to Lactoferrin and Stands as a Specific Neutrophil Marker

Mark C. Anderson , Thibault Chaze , Yves-Marie Coïc , Louise Injarabian , Friederike Jönsson , et al.
Cell Chemical Biology, 2018, 25 (4), pp.483-493.e9. ⟨10.1016/j.chembiol.2018.01.014⟩
Article dans une revue pasteur-02573125v1
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Dynamic spatiotemporal coordination of neural stem cell fate decisions through local feedback in the adult vertebrate brain

Nicolas Dray , Laure Mancini , Udi Binshtok , Felix Cheysson , Willy Supatto , et al.
2020
Pré-publication, Document de travail pasteur-03008984v1
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Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and T cell receptor vesicular trafficking

Fatoumata Samassa , Mariana Ferrari , Julien Husson , Anastassia Mikhailova , Ziv Porat , et al.
Cellular Microbiology, 2020, 22 (5), pp.e13166. ⟨10.1111/cmi.13166⟩
Article dans une revue pasteur-02616451v1
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In vitro characterization of fluorescence by unbound excitation from luminescence: Broadening the scope of energy transfer

Alexandra Holland , Florian Rückerl , Joseph Dragavon , Abdessalem Rekiki , Jean-Yves Tinevez , et al.
Methods, 2014, 66 (2), pp.353-361. ⟨10.1016/j.ymeth.2013.09.005⟩
Article dans une revue pasteur-02616460v1

A simple model for the fate of the cytokinesis midbody remnant: Implications for remnant degradation by autophagy

Elizabeth Faris Crowell , Jean-Yves Tinevez , Arnaud Echard
BioEssays, 2013, 35 (5), pp.472-481. ⟨10.1002/bies.201200132⟩
Article dans une revue istex pasteur-02616463v1
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Best Fit 3D Basilar Membrane Reconstruction to Routinely Assess the Scalar Position of the Electrode Array after Cochlear Implantation

Renato Torres , Hannah Daoudi , Ghizlene Lahlou , Neil Grislain , Eugénie Breil , et al.
Journal of Clinical Medicine, 2022, 11 (8), pp.2075. ⟨10.3390/jcm11082075⟩
Article dans une revue pasteur-03691543v1

Segmentation in Bioimaging

Jean-Yves Tinevez
Ann Wheeler; Ricardo Henriques. Standard and Super-Resolution Bioimaging Data Analysis, John Wiley & Sons, Ltd, pp.47-81, 2017, 9781119096900. ⟨10.1002/9781119096948.ch3⟩
Chapitre d'ouvrage pasteur-02624210v1
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TNF and IL-1 exhibit distinct ubiquitin requirements for inducing NEMO-IKK supramolecular structures.

Nadine Tarantino , Jean-Yves Tinevez , Elizabeth Faris Crowell , Bertrand Boisson , Ricardo Henriques , et al.
Journal of Cell Biology, 2014, 204 (2), pp.231-45. ⟨10.1083/jcb.201307172⟩
Article dans une revue pasteur-01539965v1
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HIV-induced membraneless organelles orchestrate post-nuclear entry steps

Viviana Scoca , Renaud Morin , Maxence Collard , Jean-Yves Tinevez , Francesca Di Nunzio
Journal of molecular cell biology, 2023, 14 (11), pp.mjac060. ⟨10.1093/jmcb/mjac060⟩
Article dans une revue hal-04264224v1
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Conical diffraction illumination opens the way for low phototoxicity super-resolution imaging

Julien Caron , Clément Fallet , Jean-Yves Tinevez , Lionel Moisan , L Philippe (ori) Braitbart , et al.
Cell Adhesion and Migration, 2014, 8 (5), pp.430 - 439. ⟨10.4161/cam.29358⟩
Article dans une revue hal-01386722v1
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MiniBAR/KIAA0355 is a dual Rac and Rab effector required for ciliogenesis

Ronan Shaughnessy , Murielle Serres , Sophie Escot , Hussein Hammich , Frédérique Cuvelier , et al.
2023
Pré-publication, Document de travail pasteur-04288644v1
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The infectious hypoxia: occurrence and causes during Shigella infection

Ellen T Arena , Jean-Yves Tinevez , Giulia S Nigro , Philippe Sansonetti , Benoit S Marteyn
Microbes and Infection, 2016, ⟨10.1016/j.micinf.2016.10.011⟩
Article dans une revue inserm-01424920v1
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The NEMO Dots Assembly: Single-Particle Tracking and Analysis

Jean-Yves Tinevez , Sébastien Herbert
Kota Miura; Nataša Sladoje. Bioimage Data Analysis Workflows, Springer, Cham, pp.67-96, 2019, 978-3-030-22385-4. ⟨10.1007/978-3-030-22386-1_4⟩
Chapitre d'ouvrage pasteur-02624137v1
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The frequency and consequences of multipolar mitoses in undifferentiated embryonic stem cells

Veronika Pospíšilová , Milan Ešner , Iveta Červenková , Radek Fedr , Jean-Yves Tinevez , et al.
Journal of Applied Biomedicine, 2019, 17 (4), pp.209-217. ⟨10.32725/jab.2019.018⟩
Article dans une revue pasteur-02616481v1
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LocalZProjector and DeProj: a toolbox for local 2D projection and accurate morphometrics of large 3D microscopy images

Sébastien Herbert , Léo Valon , Laure Mancini , Nicolas Dray , Paolo Caldarelli , et al.
BMC Biology, 2021, 19 (1), pp.136. ⟨10.1186/s12915-021-01037-w⟩
Article dans une revue hal-03278486v1