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Comparative analysis of viral RNA signatures on different RIG-I-like receptors.

Raul y Sanchez David , Chantal Combredet , Odile Sismeiro , Marie Dillies , Bernd Jagla , et al.
eLife, 2016, 5, pp.e11275. ⟨10.7554/eLife.11275⟩
Article dans une revue hal-01483406v1
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Distinct Transcriptional Signatures of Bone Marrow-Derived C57BL/6 and DBA/2 Dendritic Leucocytes Hosting Live Leishmania amazonensis Amastigotes

Emilie Giraud , Hervé Lecoeur , Guillaume Soubigou , Jean-Yves Coppée , Geneviève Milon , et al.
PLoS Neglected Tropical Diseases, 2012, 6 (12), pp.e1980. ⟨10.1371/journal.pntd.0001980⟩
Article dans une revue pasteur-02749829v1
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Identified members of the Streptomyces lividans AdpA regulon involved in differentiation and secondary metabolism.

Aurélie Guyet , Nadia Benaroudj , Caroline Proux , Myriam Gominet , Jean-Yves Coppée , et al.
BMC Microbiology, 2014, 14 (1), pp.81. ⟨10.1186/1471-2180-14-81⟩
Article dans une revue pasteur-00979918v1

Small RNA deep-sequencing analyses reveal a new regulator of virulence in Agrobacterium fabrum C58

Magali Dequivre , Benjamin Diel , Camille Villard , Odile Sismeiro , Maxime Durot , et al.
Molecular Plant-Microbe Interactions, 2015, 28 (5), pp.580-589. ⟨10.1094/MPMI-12-14-0380-FI⟩
Article dans une revue hal-01205620v1
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Dynamic RNA profiling in Plasmodium falciparum synchronized blood stages exposed to lethal doses of artesunate.

Onguma Natalang , Emmanuel Bischoff , Guillaume Deplaine , Caroline Proux , Marie-Agnès Dillies , et al.
BMC Genomics, 2008, 9 (1), pp.388. ⟨10.1186/1471-2164-9-388⟩
Article dans une revue pasteur-01472184v1
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Role of the BAHD1 Chromatin-Repressive Complex in Placental Development and Regulation of Steroid Metabolism

Goran Lakisic , Alice Lebreton , Renaud Pourpre , Olivia Wendling , Emanuele Libertini , et al.
PLoS Genetics, 2016, 12 (3), pp.e1005898. ⟨10.1371/journal.pgen.1005898⟩
Article dans une revue hal-01350966v1
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Repressor activity of the RpoS/σS-dependent RNA polymerase requires DNA binding

Corinne Levi-Meyrueis , Véronique Monteil , Odile Sismeiro , Marie-Agnès Dillies , Annie Kolb , et al.
Nucleic Acids Research, 2015, 43 (3), pp.1456 - 1468. ⟨10.1093/nar/gku1379⟩
Article dans une revue pasteur-01370752v1

Deep sequencing defines the transcriptional map of L. pneumophila and identifies growth phase-dependent regulated ncRNAs implicated in virulence.

Tobias Sahr , Christophe Rusniok , Delphine Dervins-Ravault , Odile Sismeiro , Jean-Yves Coppee , et al.
RNA Biology, 2012, 9 (4), pp.503-519. ⟨10.4161/rna.20270⟩
Article dans une revue pasteur-01338351v1
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RNA sequencing revealed novel actors of the acquisition of drug resistance in Candida albicans.

Sanjiveeni Dhamgaye , Maria Bernard , Gaëlle Lelandais , Odile Sismeiro , Sophie Lemoine , et al.
BMC Genomics, 2012, 13 (1), pp.396. ⟨10.1186/1471-2164-13-396⟩
Article dans une revue inserm-00733893v1
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Microarray estimation of genomic inter-strain variability in the genus Ectocarpus (Phaeophyceae)

Simon M Dittami , Caroline Proux , Sylvie Rousvoal , Akira F Peters , J Mark Cock , et al.
BMC Molecular Biology, 2011, 12, pp.2. ⟨10.1186/1471-2199-12-2⟩
Article dans une revue hal-00925432v1

Overexpression of proinflammatory TLR-2-signalling lipoproteins in hypervirulent mycobacterial variants

Anne-Laure Roux , Aurélie Ray , Alexandre Pawlik , Halima Medjahed , Gilles Etienne , et al.
Cellular Microbiology, 2011, 13 (5), pp.692-704. ⟨10.1111/j.1462-5822.2010.01565.x⟩
Article dans une revue pasteur-02618829v1
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Field-based evidence of fast and global increase of Plasmodium falciparum drug-resistance by DNA-microarrays and PCR/RFLP in Niger

Maman Laminou Ibrahim , Nicolas Steenkeste , Nimol Khim , Adam Hadiza Hassane , Lassana Konaté , et al.
Malaria Journal, 2009, 8 (1), pp.32. ⟨10.1186/1475-2875-8-32⟩
Article dans une revue hal-03736863v1
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On the origin of leprosy.

Marc Monot , Nadine Honoré , Thierry Garnier , Romulo Araoz , Jean-Yves Coppée , et al.
Science, 2005, 308 (5724), pp.1040-2. ⟨10.1126/science/1109759⟩
Article dans une revue pasteur-00204117v1
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RNA Sequencing Reveals Widespread Transcription of Natural Antisense RNAs in Entamoeba Species

Damien Mornico , Chung-Chau Hon , Mikael Koutero , Christian Weber , Jean-Yves J.-Y. Coppee , et al.
Microorganisms, 2022, 10 (2), pp.396. ⟨10.3390/microorganisms10020396⟩
Article dans une revue pasteur-03682595v1
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Genomic determinants for initiation and length of natural antisense transcripts in Entamoeba histolytica

Damien Mornico , Chung-Chau Hon , Mikael Koutero , Christian Weber , Jean-Yves Coppee , et al.
Scientific Reports, 2020, 10 (1), pp.20190. ⟨10.1038/s41598-020-77010-4⟩
Article dans une revue pasteur-03228542v1
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Intron retention-dependent gene regulation in Cryptococcus neoformans

Sara Gonzalez-Hilarion , Damien Paulet , Kyung-Tae Lee , Chung-Chau Hon , Pierre Lechat , et al.
Scientific Reports, 2016, 6 (1), pp.32252. ⟨10.1038/srep32252⟩
Article dans une revue pasteur-02861773v1
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Influenza virus infection induces widespread alterations of host cell splicing

Usama Ashraf , Clara Benoit-Pilven , Vincent Navratil , Cécile Ligneau , Guillaume Fournier , et al.
NAR Genomics and Bioinformatics, 2020, 2 (4), ⟨10.1093/nargab/lqaa095⟩
Article dans une revue hal-03021806v1
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Role of Hydrophobins in Aspergillus fumigatus

Isabel Valsecchi , Vincent Dupres , Emmanuel Stephen-Victor , J. Iñaki Guijarro , John Gibbons , et al.
Journal of Fungi, 2017, 4 (1), pp.2. ⟨10.3390/jof4010002⟩
Article dans une revue pasteur-01673574v1
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FlexiChip package: an universal microarray with a dedicated analysis software for high-thoughput SNPs detection linked to anti-malarial drug resistance.

Nicolas Steenkeste , Marie-Agnès Dillies , Nimol Khim , Odile Sismeiro , Sophy Chy , et al.
Malaria Journal, 2009, 8 (1), pp.229. ⟨10.1186/1475-2875-8-229⟩
Article dans une revue pasteur-00658817v1
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Expanding the RpoS/σS-network by RNA sequencing and identification of σS-controlled small RNAs in Salmonella.

Corinne Lévi-Meyrueis , Véronique Monteil , Odile Sismeiro , Marie-Agnès Dillies , Marc Monot , et al.
PLoS ONE, 2014, 9 (5), pp.e96918. ⟨10.1371/journal.pone.0096918⟩
Article dans une revue pasteur-01370762v1

Long oligonucleotide microarrays for African green monkey gene expression profile analysis.

Béatrice Jacquelin , Véronique Mayau , Guillaume Brysbaert , Béatrice Regnault , Ousmane M. Diop , et al.
FASEB Journal, 2007, 21 (12), pp.3262-71. ⟨10.1096/fj.07-8271com⟩
Article dans une revue pasteur-00161248v1

Naive and primed murine pluripotent stem cells have distinct miRNA expression profiles

Alice Jouneau , Constance C. Ciaudo , Odile O. Sismeiro , Vincent V. Brochard , Luc Jouneau , et al.
RNA, 2012, 18 (2), pp.253-264. ⟨10.1261/rna.028878.111⟩
Article dans une revue hal-01001312v1
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Identification of brevibacteriaceae by multilocus sequence typing and comparative genomic hybridization analyses.

Marie-Pierre Forquin , Hugo Duvergey , Caroline Proux , Valentin Loux , Jérôme Mounier , et al.
Applied and Environmental Microbiology, 2009, 75 (19), pp.6406-9. ⟨10.1128/AEM.00224-09⟩
Article dans une revue hal-00557018v1
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Genome-Wide Transcriptional Start Site Mapping and sRNA Identification in the Pathogen Leptospira interrogans

Anna Zhukova , Luis Guilherme Fernandes , Perrine Hugon , Christopher J Pappas , Odile Sismeiro , et al.
Frontiers in Cellular and Infection Microbiology, 2017, 1, ⟨10.3389/fcimb.2017.00010⟩
Article dans une revue pasteur-02545870v1
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Queuine Is a Nutritional Regulator of Entamoeba histolytica Response to Oxidative Stress and a Virulence Attenuator

Shruti Nagaraja , Maggi W Cai , Jingjing Sun , Hugo Varet , Lotem Sarid , et al.
mBio, 2021, 12 (2), pp.e03549-20. ⟨10.1128/mBio.03549-20⟩
Article dans une revue pasteur-03165902v1
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Expansion of the SOS regulon of Vibrio cholerae through extensive transcriptome analysis and experimental validation

Evelyne Krin , Sebastian Aguilar Pierlé , Odile Sismeiro , Bernd Jagla , Marie-Agnès Dillies , et al.
BMC Genomics, 2018, 19 (1), pp.373. ⟨10.1186/s12864-018-4716-8⟩
Article dans une revue pasteur-02562431v1
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From array-based hybridization of Helicobacter pylori isolates to the complete genome sequence of an isolate associated with MALT lymphoma.

Jean-Michel Thiberge , Caroline Boursaux-Eude , Philippe Lehours , Marie-Agnès Dillies , Sophie Creno , et al.
BMC Genomics, 2010, 11 (1), pp.368. ⟨10.1186/1471-2164-11-368⟩
Article dans une revue pasteur-00668206v1

Identification and characterization of the genetic changes responsible for the characteristic smooth-to-rough morphotype alterations of clinically persistent Mycobacterium abscessus

Alexandre Pawlik , Guillaume Garnier , Mickael Orgeur , Pin Tong , Amanda Lohan , et al.
Molecular Microbiology, 2013, 90 (3), pp.612-629. ⟨10.1111/mmi.12387⟩
Article dans une revue pasteur-02618774v1
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SARTools: A DESeq2-and EdgeR-Based R Pipeline for Comprehensive Differential Analysis of RNA-Seq Data

Hugo Varet , Loraine Brillet-Guéguen , Jean-Yves Coppée , Marie-Agnès Dillies
PLoS ONE, 2016, 11 (6), pp.e0157022. ⟨10.1371/journal.pone.0157022⟩
Article dans une revue hal-01344179v1

The global regulator CodY regulates toxin gene expression in Bacillus anthracis and is required for full virulence.

Willem van Schaik , Alice Château , Marie-Agnès Dillies , Jean-Yves Coppée , Abraham L Sonenshein , et al.
Infection and Immunity, 2009, 77 (10), pp.4437-45. ⟨10.1128/IAI.00716-09⟩
Article dans une revue pasteur-00512124v1