Jean THIOULOUSE - CV HAL

Noura Slimani, Juan José Jiménez, Eric Guilbert, Moncef Boumaiza, Jean Thioulouse. Surface water quality assessment in a semiarid Mediterranean region (Medjerda, Northern Tunisia) using partial triadic analysis. Environmental Science and Pollution Research, Springer Verlag, 2020, ⟨10.1007/s11356-020-09326-7⟩. ⟨hal-02624287⟩

Myriam Chiaruzzi, Alexia Barbry, Anaëlle Muggeo, Anne Tristan, Isaline Jacquemond, et al.. Vaginal Tampon Colonization by Staphylococcus aureus in Healthy Women. Applied and Environmental Microbiology, American Society for Microbiology, 2020, 86 (18), pp.e01249-20. ⟨10.1128/AEM.01249-20⟩. ⟨hal-02989503⟩

Noura Slimani, David Sánchez-Fernández, Eric Guilbert, Moncef Boumaiza, Simone Guareschi, et al.. Assessing potential surrogates of macroinvertebrate diversity in North-African Mediterranean aquatic ecosystems. Ecological Indicators, Elsevier, 2019, 101, pp.324-329. ⟨10.1016/j.ecolind.2019.01.017⟩. ⟨hal-02309882⟩

Louis Nonfoux, Myriam Chiaruzzi, Cédric Badiou, Jessica Baude, Anne Tristan, et al.. Impact of Currently Marketed Tampons and Menstrual Cups on Staphylococcus aureus Growth and Toxic Shock Syndrome Toxin 1 Production In Vitro. Applied and Environmental Microbiology, American Society for Microbiology, 2018, 84 (12), pp.e00351-18. ⟨10.1128/AEM.00351-18⟩. ⟨hal-02991480⟩

Isaline Jacquemond, Anaëlle Muggeo, Gery Lamblin, Anne Tristan, Yves Gillet, et al.. Complex ecological interactions of Staphylococcus aureus in tampons during menstruation. Scientific Reports, Nature Publishing Group, 2018, 8, pp.9942. ⟨10.1038/s41598-018-28116-3⟩. ⟨hal-02392421⟩

Aurélie Siberchicot, A. Julien-Laferrière, Ab. Dufour, J. Thioulouse, S. Dray. adegraphics: An S4 Lattice-Based Package for the Representation of Multivariate Data. The R Journal, R Foundation for Statistical Computing, 2017, 9 (2), pp.198--212. ⟨hal-01887857⟩

Noura Slimani, Eric Guilbert, Foued El Ayni, Amel Jrad, Moncef Boumaiza, et al.. The use of STATICO and COSTATIS, two exploratory three-ways analysis methods: an application to the ecology of aquatic heteroptera in the Medjerda watershed (Tunisia). Environmental and Ecological Statistics, Springer Verlag (Germany), 2017, 24 (2), pp.269 - 295. ⟨10.1007/s10651-017-0370-6⟩. ⟨hal-01910573⟩

Rory Michelland, Jean Thioulouse, Martina Kyselková, Geneviève Grundmann. Bacterial community structure at the microscale in two different soils. Microbial Ecology, Springer Verlag, 2016, 72 (3), pp.717-724. ⟨10.1007/s00248-016-0810-0⟩. ⟨hal-01606996⟩

Sanâa Wahbi, Yves Prin, Jean Thioulouse, Hervé Sanguin, Ezékiel Baudoin, et al.. Impact of Wheat/Faba Bean Mixed Cropping or Rotation Systems on Soil Microbial Functionalities. Frontiers in Plant Science, Frontiers, 2016, 7, ⟨10.3389/fpls.2016.01364⟩. ⟨hal-01911655⟩

Amélie Deredjian, Nolwenn Alliot, Laurine Blanchard, Elisabeth Brothier, Makram Anane, et al.. Occurrence of Stenotrophomonas maltophilia in agricultural soils and antibiotic resistance properties. Research in Microbiology, Elsevier, 2016, 167 (4), pp.313-324. ⟨10.1016/j.resmic.2016.01.001⟩. ⟨hal-01533885⟩

A. Dieng, E. Baudoin, Jean Thioulouse, D. Brunet, J. Toucet, et al.. Soil Organic Matter Quality, Structure and Activity of the Denitrifiers Community as Influenced by Decaying Mulched Crop Residues. Applied Ecology and Environmental Research, 2015, 13, pp.655-675. ⟨hal-02044952⟩

S. Wahbi, Y. Prin, T. Maghraoui, H. Sanguin, Jean Thioulouse, et al.. Field Application of the Mycorrhizal Fungus Rhizophagus irregularis Increases the Yield of Wheat Crop and Affects Soil Microbial Functionalities. American Journal of Plant Sciences, Scientific Research Publishing, 2015, 06, pp.3205-3215. ⟨10.4236/ajps.2015.619312⟩. ⟨hal-02018997⟩

N. Manaut, H. Sanguin, L. Ouahmane, M. Bressan, Jean Thioulouse, et al.. Potentialities of ecological engineering strategy based on native arbuscular mycorrhizal community for improving afforestation programs with carob trees in degraded environments. Ecological Engineering, 2015, 79, pp.113-119. ⟨hal-02025600⟩

H. Ramanankierana, R. Baohanta, H. Randriambanona, Y Prin, N. Rakotoarimanga, et al.. Ectomycorrhizal fungi on the early colonizing shrub Sarcolaena oblongifolia F. facilitate the establishment of an endemic tree Uapaca bojeri L. in Madagascarian highland forests. International Journal of Ecology and Ecosolution, 2014, 1, pp.1-15. ⟨hal-02045104⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Jean Thioulouse, Mélanie Lelievre, Nicolas Saby, et al.. Similar Processes but Different Environmental Filters for Soil Bacterial and Fungal Community Composition Turnover on a Broad Spatial Scale. PLoS ONE, Public Library of Science, 2014, 9 (11), pp.1-11. ⟨10.1371/journal.pone.0111667⟩. ⟨hal-01831566⟩

L. Ranjard, S. Dequiedt, Nicolas Chemidlin Prévost-Bouré, J. Thioulouse, N. P. A. Saby, et al.. Turnover of soil bacterial diversity driven by wide-scale environmental heterogeneity.. Nature Communications, Nature Publishing Group, 2013, 4, pp.1434. ⟨10.1038/ncomms2431⟩. ⟨hal-00965686⟩

I. Boudiaf, E. Baudoin, H. Sanguin, A. Beddiar, Jean Thioulouse, et al.. The exotic legume tree species, Acacia mearnsii, alters microbial soil functionalities and the early development of a native tree species, Quercus suber, in North Africa. Soil Biology and Biochemistry, Elsevier, 2013, 65, pp.172--179. ⟨hal-01887874⟩

N. Diagne, J. Thioulouse, H. Sanguin, Y. Prin, T. Krasova-Wade, et al.. Ectomycorrhizal diversity enhances growth and nitrogen fixation of Acacia mangium seedlings. Soil Biology and Biochemistry, Elsevier, 2013, 57, pp.468-476. ⟨10.1016/j.soilbio.2012.08.030⟩. ⟨hal-02168112⟩

Robin Duponnois, Ezekiel Baudoin, Hervé Sanguin, Jean Thioulouse, Christine Le Roux, et al.. Australian acacia introduction to rehabilitate degraded ecosystems is it free of environmental risks?. Bois et Forêts des Tropiques, Montpellier : CIRAD, 2013, 318 (4), pp.59-65. ⟨hal-02650502⟩

S. Dray, R. Pelissier, P. Couteron, M. -J. Fortin, P. Legendre, et al.. Community ecology in the age of multivariate multiscale spatial analysis. Ecological monographs, Ecological Society of America, 2012, 82 (3), pp.257 - 275. ⟨hal-02651154⟩

R. Duponnois, L. Ouahmane, A. Kane, J. Thioulouse, M. Hafidi, et al.. Nurse shrubs increased the early growth of Cupressus seedling by enhancing belowground mutualism ans doil microbial activity. Soil Biology and Biochemistry, Elsevier, 2011, 43, pp.2160-2168. ⟨hal-00698448⟩

Mike Vergnes, Christophe Ginevra, Elisabeth Kay, Philippe Normand, Jean Thioulouse, et al.. Insertion Sequences as Highly Resolutive Genomic Markers for Sequence Type 1 Legionella pneumophila Paris. Journal of Clinical Microbiology, American Society for Microbiology, 2011, 49 (1), pp.315-324. ⟨10.1128/JCM.01261-10⟩. ⟨hal-00599587⟩

C. Valiente-Moro, J. Thioulouse, C. Chauve, L. Zenner. Diversity Geographic Distribution and Habitat-Specific Variations of Microbiota in Natural Populations of the Chicken Mite Dermanyssus gallinae. Journal of Medical Entomology, Entomological Society of America, 2011, 48, pp.788-796. ⟨hal-00698289⟩

J. Thioulouse. SIMULTANEOUS ANALYSIS OF A SEQUENCE OF PAIRED ECOLOGICAL TABLES: A COMPARISON OF SEVERAL METHODS. Annals of Applied Statistics, Institute of Mathematical Statistics, 2011, 5, pp.2300-2325. ⟨hal-00698260⟩

Samuel Dequiedt, Nicolas Saby, Mélanie Lelievre, Claudy Jolivet, Jean Thioulouse, et al.. Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management. Global Ecology and Biogeography, Wiley, 2011, 20 (4), pp.641-652. ⟨10.1111/j.1466-8238.2010.00628.x⟩. ⟨hal-02647737⟩

S. Dequiedt, N.P.A. Saby, M. Lelievre, C. Jolivet, J. Thioulouse, et al.. Biogeographical patterns of soil molecular microbial biomass as influenced by soil characteristics and management. Global Ecology and Biogeography, Wiley, 2011, 20, pp.641-652. ⟨hal-00698381⟩

J. Thioulouse, C. Valiente Moro, L. Zenner. Online Reproducible Research: An Application to Multivariate Analysis of Bacterial DNA Fingerprint Data. The R Journal, R Foundation for Statistical Computing, 2010, 2 (1), pp.44-52. ⟨hal-00539265⟩

Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas P.A. Saby, Jean Thioulouse, et al.. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. Agronomy for Sustainable Development, Springer Verlag/EDP Sciences/INRA, 2010, 30 (2), pp.359-365. ⟨10.1051/agro/2009033⟩. ⟨hal-00886549⟩

N.P.A. Saby, J. Thioulouse, C. Jolivet, C. Ratié, L. Boulonne, et al.. Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data. Science of the Total Environment, Elsevier, 2009, 407, pp.5644-5652. ⟨hal-00539321⟩

L. Ouahmane, J.C. Revel, M. Hafidi, J. Thioulouse, Y. Prin, et al.. Responses of Pinus halepensis growth, soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation.. Plant and Soil, Springer Verlag, 2009, 320, pp.169-179. ⟨10.1007/s11104-008-9882-z⟩. ⟨hal-00481331⟩

A. Faye, T. Krasova-Wabe, M. Thiao, J. Thioulouse, M. Neyra, et al.. Controlled ectomycorrhization of an exotic legume tree species Acacia holosericea affects the structure of root nodule bacteria community and their symbiotic effectiveness on Faidherbia albida a native Sahelian Acacia. Soil Biology and Biochemistry, Elsevier, 2009, 41(6), pp.1245-1252. ⟨hal-00539325⟩

A. Sanon, Z. N. Andrianjaka, Y. Prin, R. Bally, J. Thioulouse, et al.. Rhizosphere microbiota interfers with plant-plant interactions. Plant and Soil, Springer Verlag, 2009, pp.259-278. ⟨10.1007/s11104-009-0010-5⟩. ⟨halsde-00525562⟩

S. Dequiedt, J. Thioulouse, C. Jolivet, N.Pa. Savy, M. Lelievre, et al.. Biogeographical patterns of soil bacterial communities. Environmental Microbiology Reports, Wiley, 2009, 1(4), pp.251-255. ⟨hal-00539298⟩

C.L. Santos, F. Tavares, J. Thioulouse, P. Normand. Aphylogenomic analysis of bacterial helix^turn^helix transcription factors. FEMS Microbiology Reviews, Wiley-Blackwell, 2009, 33, pp.411-429. ⟨hal-00428331⟩

S. Dequiedt, M. Lelièvre, C. Jolivet, N.P.A. Saby, M. Martin, et al.. ECOMIC-RMQS: biogéographie microbienne à l`échelle de la France. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2009, 16(3), pp.219-231. ⟨hal-00539409⟩

Nicolas Saby, J. Thioulouse, Claudy Jolivet, Céline Ratié, Line Boulonne, et al.. Multivariate analysis of the spatial patterns of 8 trace elements using the French soil monitoring network data. Science of the Total Environment, Elsevier, 2009, 407, pp.5644-5652. ⟨10.1016/j.scitotenv.2009.07.002⟩. ⟨hal-02661461⟩

Samuel Dequiedt, Jean Thioulouse, Claudy Jolivet, Nicolas Saby, Mélanie Lelièvre, et al.. Biogeographical patterns of soil bacterial communities. Environmental Microbiology Reports, Wiley, 2009, 1 (4), pp.251 - 255. ⟨10.1111/j.1758-2229.2009.00040.x⟩. ⟨hal-02668713⟩

R. Duponnois, M. Hafidi, J. Thioulouse, A. Galiana, L. Ouahmane, et al.. Monitoring the Development of Nurse Plant Species to Improve the Performances of Reforestation Programs in Mediterranean Areas. incollection, 2009, --, pp.443-450. ⟨hal-00539323⟩

Samuel Dequiedt, Maud Lelièvre, Claudy Jolivet, Nicolas Saby, Manuel Martin, et al.. ECOMIC-RMQS : biogéographie microbienne à l’échelle de la France. Etat d’avancement et premiers résultats. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2009, 16 (3-4), pp.219-231. ⟨hal-02656049⟩

L. Ouahmane, J.C. Revel, M. Hafidi, J. Thioulouse, Y. Prin, et al.. Responses of Pinus halepensis growth soil microbial catabolic functions and phosphate-solubilizing bacteria after rock phosphate amendment and ectomycorrhizal inoculation. Plant and Soil, Springer Verlag, 2009, 320 (1-2), pp.169-179. ⟨hal-00539326⟩

Claire Valiente Moro, Jean Thioulouse, Claude Chauve, Philippe Normand, Lionel Zenner. Bacterial taxa associated with the hematophagous mite Dermanyssus gallinae detected by 16S rRNA PCR amplification and TTGE fingerprinting. Research in Microbiology, Elsevier, 2008, 160 (1), pp.63-70. ⟨10.1016/j.resmic.2008.10.006⟩. ⟨halsde-00354551⟩

P. Remigi, A. Faye, A. Kane, M. Deruaz, J. Thioulouse, et al.. The exotic legume tree species Acacia holosericea alters microbial soil functionalities and the structure of the arbuscular mycorrhizal community. Applied and Environmental Microbiology, American Society for Microbiology, 2008, 74, pp.1485-1493. ⟨hal-00428113⟩

L. Ouahmane, M. Hafidi, J. Thioulouse, M. Ducousso, M. Kisa, et al.. Improvement of Cupressus atlantica Gaussen growth by inoculation with native arbuscular mycorrhizal fungi. Journal of Applied Ecology, Wiley, 2007, 103, pp.683-690. ⟨hal-00434750⟩

Z. Andrianjaka, R. Bally, M. Lepage, J. Thioulouse, G. Comte, et al.. Biological control of Striga hermonthica by Cubitermes termite mound powder amendment in sorghum culture. Applied Soil Ecology, Elsevier, 2007, 37 (3), pp.175-183. ⟨10.1016/j.apsoil.2007.03.001⟩. ⟨hal-00434739⟩

Z. Andrianjaka, R. Bally, Michel Lepage, J. Thioulouse, G. Comte, et al.. Biological control of Striga hermontica by Cubiterms mound powder amendment in sorghum culture. Applied Soil Ecology, Elsevier, 2007, in press (3), pp.000-000. ⟨10.1016/j.apsoil.2007.03.001⟩. ⟨bioemco-00139031⟩

M. Kisa, A. Sanon, J. Thioulouse, K. Assigbetse, S. Sylla, et al.. Arbuscular mycorrhizal symbiosis can counterbalance the negative influence of the exotic tree species Eucalyptus camaldulensis on the structure and functioning of soil microbial communities in a sahelian soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2007, 62, pp.32-44. ⟨hal-00434614⟩

F. Lasne, J. Thioulouse, L. Martin, J. de Ceaurriz. Detection of recombinant human erythropoietin in urine for doping analysis: interpretation of isoelectric profiles by discriminant analysis. Electrophoresis, Wiley-VCH Verlag, 2007, 28, pp.1875-1881. ⟨hal-00434616⟩

J. Thioulouse, S. Dray. Interactive Multivariate Data Analysis in R with the ade4 and ade4TkGUI Packages. Journal of Statistical Software, University of California, Los Angeles, 2007, 22, pp.1-14. ⟨hal-00434618⟩

L. Ouahmane, Jean Thioulouse, M. Hafidi, Yves Prin, Marc Ducousso, et al.. Soil functional diversity and P solubilization from rock phosphate after inoculation whith native or allochtonous arbuscular mycorrhizal fungi. Forest Ecology and Management, Elsevier, 2007, 241 (1-3), pp.200-208. ⟨10.1016/j.foreco.2007.01.015⟩. ⟨hal-02661541⟩

L. Ouahmane, J. Thioulouse, M. Hafidi, Y. Prin, A. Galiana, et al.. Soil functional diversity and P solubilization from rock phosphate after inoculation with native or allochtonous arbuscular mycorrhizal fungi. Forest Ecology and Management, Elsevier, 2007, 241, pp.200-208. ⟨hal-00434676⟩

N. Ramanankierana, M. Ducousso, N. Rakotoarimanga, Y. Prin, J. Thioulouse, et al.. Arbuscular mycorrhizas and ectomycorrhizas of Uapaca bojeri L. (Euphorbiaceae): sporophore diversity patterns of root colonization and effects on seedling growth and soil microbial catabolic diversity. Mycorrhiza, Springer Verlag, 2007, 17, pp.195-208. ⟨hal-00434639⟩

M. Kisa, A. Sanon, J. Thioulouse, K. Assigbetse, S. Sylla, et al.. Arbuscular mycorrhizal symbiosis can counterbalance the negative influence of the exotic tree species Eucalyptus camaldulensis on the structure and functioning of soil microbial communities in a sahelian soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2007, in press (1), pp.000-000. ⟨10.1111/j.1574-6941.2007.00363.x⟩. ⟨bioemco-00175809⟩

A.C. Culhane, J. Thioulouse. A multivariate approach to integrating Datasets using made4 and ade4. R News, 2006, --, pp.1-15. ⟨hal-00427922⟩

L. Ouahmane, R. Duponnois, M. Hafidi, M. Kisa, A. Boumezzough, et al.. Some Mediterranean plant species (Lavandula spp. and Thymus satureioides) act as potential `plant nurses` for the early growth of Cupressus atlantica. Plant Ecology, Springer Verlag, 2006, 185, pp.123-134. ⟨hal-00427997⟩

Perrine Portier, Marion Fischer-Le Saux, Christophe Mougel, Catherine Lerondelle, David Chapulliot, et al.. Identification of Genomic Species in Agrobacterium Biovar 1 by AFLP Genomic Markers. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (11), pp.7123-7131. ⟨hal-00128068⟩

Hervé Sanguin, B. Remenant, Arnaud Dechesne, J. Thioulouse, Timothy Vogel, et al.. Potential of a 16S rRNA-based taxonomic microarray for analyzing the rhizosphere effects of maize on Agrobacterium spp. and bacterial communities. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (6), pp.4302-4312. ⟨hal-00141153⟩

R. Duponnois, K. Assikbetse, H. Ramanankierana, M. Kisa, J. Thioulouse, et al.. Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 56, pp.292-303. ⟨hal-00427944⟩

N. Ramanankierana, N. Rakotoarimanga, J. Thioulouse, K. Marija, E. Randrianjohany, et al.. The Ectomycorrhizosphere Effect Influences Functional Diversity of Soil Microflora. International Journal of Soil Science, Academic Journals Inc., 2006, 1, pp.8-19. ⟨hal-00428054⟩

H. Sanguin, B. Remenat, A. Dechesne, J. Thioulouse, T.M. Vogel, et al.. Potential of 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72, pp.4302-4312. ⟨hal-00428030⟩

L. Ouahmane, M. Hafidi, C. Plenchette, M. Kisa, A. Boumezzough, et al.. Lavandula species as accompanying plants in Cupressus replanting strategies : Effect on plant growth mycorrhizal soil infectivity and soil microbial catabolic diversity. Applied Soil Ecology, Elsevier, 2006, --, pp.190-199. ⟨hal-00428018⟩

Lahcen Ouahmane, Mohamed Hadifi, Christian Plenchette, Marija Kisa, Ali Boumezzough, et al.. Lavendula species as accompanying plants in Cupressus replanting strategies: Effect on plant growth, mycorrhizal soil infectivity and soil microbial catabolic diversity. Applied Soil Ecology, Elsevier, 2006, 34 (2-3), pp.190-199. ⟨10.1016/j.apsoil.2006.02.002⟩. ⟨hal-02661557⟩

J.Y. Le Hesran, N. Fievet, J. Thioulouse, P. Personne, B. Maubert, et al.. Development of cellular immune responses to Plasmodium falciparum blood stage antigens from birth to 36 months of age in Cameroon. Acta Tropica, Elsevier, 2006, 98, pp.261-269. ⟨hal-00427989⟩

Perrine Portier, Marion Le Saux, Christophe Mougel, Catherine Lerondelle, David Chapulliot, et al.. Identification of genomic species in Agrobacterium biovar 1 by AFLP genomic markers. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (11), pp.7123-7131. ⟨10.1128/AEM.00018-06⟩. ⟨hal-02657982⟩

Hervé Sanguin, Benoit Remenant, Arnaud Dechesne, Jean Thioulouse, Timothy M. Vogel, et al.. Potential of a 16S rRNA-Based Taxonomic Microarray for Analyzing the Rhizosphere Effects of Maize on Agrobacterium spp. and Bacterial Communities. Applied and Environmental Microbiology, American Society for Microbiology, 2006, 72 (6), pp.4302-4312. ⟨10.1128/AEM.02686-05⟩. ⟨hal-02659520⟩

R. Duponnois, M. Kisa, K. Assigbetse, Y. Prin, Jean Thioulouse, et al.. Fluorescent pseudomonads occuring in Macrotermes subhyalinus mound structures decrease Cd toxicity and improve its accumulation in sorghum plants. Science of the Total Environment, Elsevier, 2006, 370, pp.391-400. ⟨10.1016/j.scitotenv.2006.07.008⟩. ⟨bioemco-00139213⟩

R. Duponnois, K. Assigbetse, H. Ramanankierana, M. Kisa, Jean Thioulouse, et al.. Litter-forager termite mounds enhance the ectomycorrhizal symbiosis between Acacia holosericea A. Cunn. Ex G. Don and Scleroderma dictyosporum isolates. FEMS Microbiology Ecology, Wiley-Blackwell, 2006, 56, pp.292-303. ⟨10.1016/j.ecoleng.2017.01.010⟩. ⟨bioemco-00139218⟩

A. Sanon, P. Martin, J. Thioulouse, C. Plenchette, R. Spichiger, et al.. Displacement of an herbaceous plant species community by mycorrhizal and non-mycorrhizal Gmelina arborea an exotic tree grown in a microcosm experiment. Mycorrhiza, Springer Verlag, 2006, 16, pp.125-132. ⟨hal-00428011⟩

M.D. Diallo, R. Duponnois, A. Guisse, S. Sall, J.-L. Chotte, et al.. Biological effects of native and exotic plant residues on plant growth microbial biomass and N availability under controlled conditions. European Journal of Soil Biology, Elsevier, 2006, 42, pp.238-246. ⟨hal-00427941⟩

A. Sanon, P. Martin, Jean Thioulouse, Christian Plenchette, Rodolphe Spichiger, et al.. Displacement of an herbaceous plant species community by mycorrhizal and non-mycorrhizal Gmelina arborea, an exotic tree, grown in a microcosm experiment. Mycorrhiza, Springer Verlag, 2006, 16 (2), pp.125-132. ⟨10.1007/s00572-005-0024-7⟩. ⟨bioemco-00139034⟩

R. Duponnois, A. Colombet, V. Hien, J. Thioulouse. The mycorrhizal fungus Glomus intraradices and rock phosphate amendment influence plant growth and microbial activity in the rhizosphere of Acacia holosericea. Soil Biology and Biochemistry, Elsevier, 2005, 37, pp.1460-1468. ⟨hal-00427743⟩

R. Duponnois, M. Paugy, J. Thioulouse, D. Masse, M. Lepage. Functional diversity of soil microbial community rock phosphate dissolution and growth of Acacia seyal as influenced by grass- litter- and soil-feeding termite nest structure amendments. Geoderma, Elsevier, 2005, 124, pp.349-361. ⟨hal-00427744⟩

K. Assigbetse, M. Gueye, J. Thioulouse, R. Duponnois. Soil bacterial diversity responses to root colonization by an ectomycorrhizal fungus are not root-growth dependent. Microbial Ecology, Springer Verlag, 2005, 50, pp.350-359. ⟨hal-00427705⟩

D. Charif, J. Thioulouse, J.R. Lobry, G. Perrière. Online synonymous codon usage analyses with the ade4 and seqinR packages. Bioinformatics, Oxford University Press (OUP), 2005, 21, pp.545-547. ⟨hal-00427727⟩

A.C. Culhane, J. Thioulouse, G. Perrière, D.G. Higgins. MADE4: an R package for multivariate analysis of gene expression data. Bioinformatics, Oxford University Press (OUP), 2005, 21, pp.2789-2790. ⟨hal-00427730⟩

P. Cadet, D. Masse, J. Thioulouse. Relationships between plant-parasitic nematode community fallow duration and soil factors in the Sudano-Sahelian area of Senegal. Agriculture, Ecosystems and Environment, Elsevier Masson, 2005, 108, pp.302-317. ⟨hal-00427718⟩

R. Duponnois, M. Paugy, Jean Thioulouse, D. Masse, Michel Lepage. Functional diversity of soil microbial community, rock phosphate dissolution and growth of Acacia seyal as influenced by grass-litter and soil-feeding termite nest structure amendments. Geoderma, Elsevier, 2005, 124, pp.349-361. ⟨bioemco-00139206⟩

D. Chessel, Anne-Béatrice Dufour, J. Thioulouse. The ade4 package - I : One-table methods. R News, 2004, 4, pp.5-10. ⟨hal-00427558⟩

J. Thioulouse, Monique Simier, D. Chessel. Simultaneous analysis of a sequence of paired ecological tables with the STATICO method. Ecology, Ecological Society of America, 2004, 85, pp.272-283. ⟨hal-00427660⟩

T. Naizot, Y. Auda, A. Dervieux, J. Thioulouse, M.F. Bellan. Une nouvelle analyse multi-temporelle d`images satellitales les residus de l`Analyse en Composantes Principales. Un cas d`etude: une serie d`images Landsat Thematic Mapper de la Camargue France.. International Journal of Remote Sensing, Taylor & Francis, 2004, 25, pp.1925-1938. ⟨hal-00427631⟩

J. Vogel, P. Normand, J. Thioulouse, X. Nesme, G. Grundmann. Relationship between spatial and genetic distance in Agrobacterium spp. in 1 cubic centimeter of soil.. Applied and Environmental Microbiology, American Society for Microbiology, 2003, 69, pp.1482-1487. ⟨10.1128/AEM.69.3.1482-1487.2003⟩. ⟨hal-00427492⟩

S. Dray, D. Chessel, J. Thioulouse. Procustean co-inertia analysis for the linking of multivariate datasets. Ecoscience, Ecoscience, 2003, 10, pp.110-119. ⟨hal-00427412⟩

S. Dray, D. Chessel, J. Thioulouse. Co-inertia analysis and the linking of ecological tables. Ecology, Ecological Society of America, 2003, 84, pp.3078-3089. ⟨hal-00427392⟩

G. Perriere, C. Combet, S. Penel, C. Blanchet, J. Thioulouse, et al.. Integrated databanks access and sequence/structure analysis services at the PBIL.. Nucleic Acids Research, Oxford University Press, 2003, pp.3393-3399. ⟨hal-00146928⟩

G. Perriere, C. Combet, S. Penel, C. Blanchet, J. Thioulouse, et al.. Integrated databanks access and sequence/structure analysis services at the PBIL.. Nucleic Acids Research, Oxford University Press, 2003, 31, pp.3393-3399. ⟨hal-00313743⟩

P. Cadet, E. Pate, J. Thioulouse. Relationship of nematode communities to human demographics and environment in agricultural fields and fallow lands in Senegal.. Journal of Tropical Ecology, Cambridge University Press (CUP), 2003, 19, pp.279-290. ⟨hal-00427377⟩

S. Ollier, D. Chessel, P. Couteron, R. Pélissier, J. Thioulouse. Comparing and classifying one-dimensional spatial patterns: an application to laser altimeter profiles.. Remote Sensing of Environment, Elsevier, 2003, 85, pp.453-462. ⟨hal-00427457⟩

S. Ollier, D. Chessel, Pierre Couteron, R. Pelissier, J. Thioulouse. Comparing and classifying one-dimensional spatial patterns: an application to laser altimeter profiles. Remote Sensing of Environment, Elsevier, 2003, 85 (4), pp.453-462. ⟨10.1016/S0034-4257(03)00038-5⟩. ⟨hal-02308908⟩

G. Perrière, J. Thioulouse. Use of Correspondence Discriminant Analysis to predict the subcellular location of bacterial proteins. Computer Methods and Programs in Biomedicine, Elsevier, 2003, 70, pp.99-105. ⟨hal-00427414⟩

S. Jarraud, C. Mougel, J. Thioulouse, G. Lina, H. Meugnier, et al.. Relationships between Staphylococcus aureus genetic background virulence factors agr groups (alleles) and human disease.. Infection and Immunity, American Society for Microbiology, 2002, 70, pp.631-641. ⟨10.1128/IAI.70.2.631-641.2002⟩. ⟨hal-00427274⟩

C. Mougel, J. Thioulouse, G. Perrière, X. Nesme. A mathematical method for determining genome divergence and species delineation using AFLP. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2002, 52, pp.573-586. ⟨10.1099/00207713-52-2-573⟩. ⟨hal-00427290⟩

H. Founoune, R. Duponnois, J.M. Meyer, J. Thioulouse, D. Masse, et al.. Interactions between ectomycorrhizal symbiosis and fluorescent pseudomonads on Acacia holosericea: isolation of mycorrhiza helper bacteria (MHB) from a Soudano-Sahelian soil. FEMS Microbiology Ecology, Wiley-Blackwell, 2002, 41, pp.37-46. ⟨hal-00427317⟩

G. Perrière, J. Thioulouse. Use and misuse of correspondence analysis in codon usage studies. Nucleic Acids Research, Oxford University Press, 2002, 30, pp.4548-4555. ⟨hal-00427295⟩

Christophe Mougel, Jean Thioulouse, Guy Perrière, Xavier Nesme. A mathematical method for determining genome divergence and species delineation using AFLP. International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2002, 52, pp.573-586. ⟨hal-02673208⟩

S. Jarraud, Christophe Mougel, Jean Thioulouse, Gérard Lina, H. Meugnier, et al.. Relationships between Staphylococcus aureus genetic background, virulence factors, agr groups (alleles), and human disease. Infection and Immunity, American Society for Microbiology, 2002, 70 (2), pp.631-641. ⟨hal-02681316⟩

Dominique Pontier, Ludovic Say, Francois Débias, Joël Bried, Jean Thioulouse, et al.. The diet of feral cats (Felis catus L.) at five sites on the Grande Terre, Kerguelen archipelago. Polar Biology, Springer Verlag, 2002, 25, pp.833-837. ⟨10.1007/s00300-002-0424-5⟩. ⟨hal-00192200⟩

L. Ranjard, F. Poly, J. C. Lata, C. Mougel, J. Thioulouse, et al.. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints: biological and methodological variability.. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (10), pp.4479-87. ⟨10.1128/AEM.67.10.4479–4487.2001⟩. ⟨bioemco-00353796⟩

R. Duponnois, C. Plenchette, J. Thioulouse, P. Cadet. Mycorrhizal soil infectivity and AM fungal spore communities of different aged fallows in Senegal. Applied Soil Ecology, Elsevier, 2001, 17, pp.239-251. ⟨hal-00427166⟩

Lionel Ranjard, F. Poly, J.C. Lata, Christophe Mougel, Jean Thioulouse, et al.. Characterization of bacterial and fungal soil communities by automated ribosomal intergenic spacer analysis fingerprints : biological and methodological variability. Applied and Environmental Microbiology, American Society for Microbiology, 2001, 67 (10), pp.4479-4487. ⟨hal-02674586⟩

Christophe Mougel, Sabrina Teyssier, C. d'Angelo, K. Groud, M. Neyra, et al.. Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics. Genetics Selection Evolution, BioMed Central, 2001, 33 (1), pp.319-338. ⟨hal-02670077⟩

Robin Duponnois, Christian Plenchette, Jean Thioulouse, Patrice Cadet. The mycorrhizal soil infectivity and arbuscular mycorrhizal fungal spore communities in soils of different aged fallows in Senegal. Applied Soil Ecology, Elsevier, 2001, 17, pp.239-251. ⟨hal-02678685⟩

C. Mougel, S. Teyssier, C. d'Angelo, K. Groud, M. Neyra, et al.. Experimental and theoretical evaluation of typing methods based upon random amplification of genomic restriction fragments (AFLP) for bacterial population genetics. Genetics Selection Evolution, BioMed Central, 2001, 33, pp.S319-S338. ⟨hal-00427187⟩

Patrice Cadet, J.F. Bois, J.L. Chotte, Robin Duponnois, N.D. N'Diaye-Faye, et al.. Recherche de méthodes de gestion des peuplements de nématodes phytoparasites par les facteurs du sol en zone soudano-sahélienne au Sénégal. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2000, 7 (4), pp.261-270. ⟨hal-02688327⟩

P. Cadet, J.-F. Bois, J.-L. Chotte, R. Duponnois, N. N'Diaye-Faye, et al.. Recherche de méthodes de gestion des peuplements de nématodes phytoparasites par les facteurs du sol en zone soudano-sahélienne au Sénégal. Etude et Gestion des Sols, Association Française pour l'Etude des Sols, 2000, 7 (4), pp.261-270. ⟨hal-01419625⟩

P.A. Reynaud, J. Thioulouse. Identification of birds as biological markers along a neotropical urban-rural gradient using co-inertia analysis. Journal of Environmental Management, Elsevier, 2000, 59, pp.121-140. ⟨hal-00427104⟩

L. Ranjard, F. Poly, J. Combrisson, A. Richaume, F. Gourbiere, et al.. Heterogeneous Cell Density and Genetic Structure of Bacterial Pools Associated with Various Soil Microenvironments as Determined by Enumeration and DNA Fingerprinting Approach (RISA). Microbial Ecology, Springer Verlag, 2000, 39, pp.263-272. ⟨hal-00427090⟩

L. Ranjard, S. Nazaret, F. Gourbiere, J. Thioulouse, P. Linet, et al.. A soil microscale study to reveal the heterogeneity of Hg(II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints. FEMS Microbiology Ecology, Wiley-Blackwell, 2000, 31 (2), pp.107-115. ⟨10.1111/j.1574-6941.2000.tb00676.x⟩. ⟨hal-00427100⟩

E. Pate, N. Ndiaye-Faye, J. Thioulouse, C. Villenave, T. Bongers, et al.. Successional trends in the characteristics of soil nematodes communities in cropped and fallow lands in Senegal (Sonkorong). Applied Soil Ecology, Elsevier, 2000, 14, pp.5-15. ⟨hal-00427089⟩

R. Duponnois, H. Founoune, D. Lesueur, J. Thioulouse, M. Neyra. Ectomycorrhization of six Acacia auriculiformis provenances from Australia Papua New Guinea and Senegal in glasshouse conditions: effect on the plant growth and on the multiplication of plant parasitic nematodes. Australian Journal of Experimental Agriculture, CSIRO Publishing, 2000, 40, pp.443-450. ⟨hal-00427074⟩

Lionel Ranjard, F. Poly, J. Combrisson, A. Richaume, F. Gourbiere, et al.. Heterogeneous cell density and genetic structure of bacterial pools associated with various microenvironments as determined by enumeration and DNA fingerprinting approach (RISA). Microbial Ecology, Springer Verlag, 2000, 39, pp.263-272. ⟨hal-02692654⟩

Lionel Ranjard, Sylvie Nazaret, F. Gourbiere, Jean Thioulouse, P. Linet, et al.. A soil microscale study to reveal the heterogeneity of Hg (II) impact on indigenous bacteria by quantification of adapted phenotypes and analysis of community DNA fingerprints. FEMS Microbiology Ecology, Wiley-Blackwell, 2000, 31, pp.107-115. ⟨hal-02690814⟩

R. Duponnois, M. Fargette, S. Fould, J. Thioulouse, K.G. Davies. Diversity of the bacterial hyperparasite Pasteuria penetrans in relation to the control of root-knot nematodes (Meloidogyne spp.) on Acacia holosericea. Nematology, Brill Academic Publishers, 2000, 2, pp.435-442. ⟨hal-00427073⟩

Raphaël J. Manlay, P. Cadet, J. Thioulouse, J.L. Chotte. Relationships between abiotic and biotic soil properties during fallow periods in the sudanian zone of Senegal. Applied Soil Ecology, Elsevier, 2000, 14, pp.89-101. ⟨hal-00427094⟩

R. Duponnois, K. Senghor, J. Thioulouse, A. Ba. Susceptibility of several sahelian Acacia to Meloidogyne javanica (Treub) Chitw. Agroforestry Systems, Springer Verlag, 1999, 46, pp.123-130. ⟨hal-00428443⟩

P. Cadet, J. Thioulouse. Identification of soil factors that relate to the structure of the plant parasitic nematode community. Applied Soil Ecology, Elsevier, 1998, 8, pp.35-49. ⟨hal-00428480⟩

V. Robert, H.P. Awono-Ambene, J. Thioulouse. Ecology of larval mosquitoes with special reference to Anopheles arabiensis (Diptera: Culcidae) in market-garden wells in urban Dakar Senegal. Journal of Medical Entomology, Entomological Society of America, 1998, 35, pp.948-955. ⟨hal-00428477⟩

S. Champely, B. Guinand, J. Thioulouse, A. Clermidy. Functional data analysis of curve asymmetry with application to the color pattern of Hydropsyche contubernalis head capsule. Biometrics, Wiley, 1997, 53, pp.294-305. ⟨hal-00434974⟩

J. Thioulouse, D. Chessel, S. Dolédec, J.M. Olivier. ADE-4: a multivariate analysis and graphical display software. Statistics and Computing, Springer Verlag (Germany), 1997, 7, pp.75-83. ⟨hal-00434994⟩

G. Perrière, J.R. Lobry, J. Thioulouse. Correspondence discriminant analysis: a multivariate method for comparing classes of protein and nucleic acid sequences. Computer Applications in the Biosciences, 1996, 12, pp.519-524. ⟨hal-00435036⟩

G. Perrière, J. Thioulouse. On-line tools for sequence retrieval and multivariate statistics in molecular biology. Computer Applications in the Biosciences, 1996, 12, pp.63-69. ⟨hal-00435037⟩

J. Thioulouse. Towards Better Graphics for Multivariate Analysis: the Interactive Factor Map. Computational Statistics and Data Analysis, Elsevier, 1996, 11, pp.11-21. ⟨hal-00435039⟩

J. Thioulouse, François Chevenet. NetMul a World-Wide Web user interface for multivariate analysis sofware. Computational Statistics and Data Analysis, Elsevier, 1996, 21, pp.369-372. ⟨hal-00435040⟩

J. Thioulouse, S. Doledec, D. Chessel, J.M. Olivier. DE software: multivariate analysis and graphical display of environmental data. incollection, 1995, --, pp.57-62. ⟨hal-00698255⟩

J. Thioulouse, J.R. Lobry. Co-inertia analysis of amino-acid physico-chemical properties and protein composition with the ADE package. Bioinformatics, Oxford University Press (OUP), 1995, 11, pp.321-329. ⟨hal-00698259⟩

J. Thioulouse, D. Chessel, S. Champely. Multivariate analysis of spatial patterns: a unified approach to local and global structures. Environmental and Ecological Statistics, Springer Verlag (Germany), 1995, 2, pp.1-14. ⟨hal-00698251⟩

J. Devillers, J. Thioulouse, W. Karcher. Chemometrical evaluation of multispecies-multichemical data by means of graphical techniques combined with multivariate analyses. Ecotoxicology and Environmental Safety, Elsevier, 1993, 26, pp.333-345. ⟨hal-00698425⟩

J. Thioulouse, J.P. Royet, H. Ploye, F. Houllier. Evaluation of the Precision of Systematic Sampling : Nugget Effect and Covariogram Modelling. Journal of Microscopy, Wiley, 1993, 172, pp.249-256. ⟨hal-00698249⟩

Jean Thioulouse, J.P. Royet, H. Ploye, François Houllier. Evaluation of the precision of systematic sampling nugget effect and covariogram modelling. Journal of Microscopy, Wiley, 1993, 172 (3), pp.249-256. ⟨hal-02708844⟩

J. Thioulouse, D. Chessel. A method for reciprocal scaling of species tolerance and sample diversity. Ecology, Ecological Society of America, 1992, 73, pp.670-680. ⟨hal-00698261⟩

J. Thioulouse, J. Devillers, D. Chessel, Y. Auda. Graphical Techniques for Multidimensional Data Analysis. incollection, 1991, --, pp.153-205. ⟨hal-00698252⟩

J. Devillers, J. Thioulouse, D. Domine, M. Chastrette, W. Karcher. Multivariate Analysis of the Input and Output Data in the Fugacity Model Level I. incollection, 1991, --, pp.281-345. ⟨hal-00698422⟩

J. Thioulouse. MacMul and GraphMu :two Macintosh programs for the display and analysis of multivariate data. Computers & Geosciences, Elsevier, 1990, 16, pp.1235-1240. ⟨hal-00698262⟩

J. Thioulouse. Statistical analysis and graphical display of multivariate data on the Macintosh. Computer Applications in the Biosciences, 1989, 5, pp.287-292. ⟨hal-00698254⟩

J. Thioulouse. Space-Time Structure in a Winter Rape Pest Population Psylliodes chrysocephala (Col. chrysomelidae): methodological proposals and biological interpretations. Journal of Applied Ecology, Wiley, 1987, 24, pp.435-450. ⟨hal-00698253⟩

J. Thioulouse, D. Chessel. Les analyses multitableaux en ecologie factorielle. I : de la typologie d'etat a la typologie de fonctionnement par l'analyse triadique. Acta Oecologica Oecologia Generalis, 1987, 8, pp.463-480. ⟨hal-00698250⟩

J. Thioulouse, B. Mathy, H. Ploye. Estimation d'un Volume a partir de Coupes Seriees : Sous-Echantillonnage Covariogramme Transitif et Calcul de Precision. Mikroskopie (Wien), 1985, 42, pp.215-224. ⟨hal-00698258⟩

J. Thioulouse, F. Houllier, J.C. Onillon. Variables regionalisees et denombrement d'Insectes : cas unidimensionnel. Comptes rendus de l’Académie des sciences. Série III, Sciences de la vie, Elsevier, 1985, 301, pp.423-428. ⟨hal-00698256⟩

J. Thioulouse, D. Debouzie, Y. Ballanger. Structures spatiales et temporelles des populations d'un ravageur du Colza (Psylliodes chrysocephala L. (Col. Chrysomelidae)) dans plusieurs parcelles de culture. Acta Oecologica Oecologia Applicata, 1984, 5, pp.335-353. ⟨hal-00698257⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas Saby, Jean Thioulouse, Claudy Jolivet, et al.. Spatial processes driving soil microbial community assembly on a wide scale. 4. International Congress Eurosoil 2012 - Soil Science for the Benefit of Mankind and Environment, Jul 2012, Bari, Italy. ⟨hal-02808311⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas Saby, Jean Thioulouse, Claudy Jolivet, et al.. Soil fungal communities ecology: a biogeographical approach. Ecology of soil Microorganisms Conference, Apr 2011, Prague, Czech Republic. 1 p. ⟨hal-02808083⟩

Samuel Dequiedt, Nicolas Saby, Mélanie Lelievre, Claudy Jolivet, Jean Thioulouse, et al.. Biogeographical patterns of soil molecular microbial biomass. Ecology of soil microorganisms : microbes as important drivers of soil processes, Apr 2011, Prague, Czech Republic. 1 p. ⟨hal-02747664⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Nicolas Saby, Mélanie Lelievre, Claudy Jolivet, et al.. Biogéographie Microbienne: mythe ou réalité ?. Ecologie 2010, Sep 2010, Montpellier, France. n.p. ⟨hal-02758446⟩

Samuel Dequiedt, Nicolas Chemidlin Prévost-Bouré, Nicolas Saby, Jean Thioulouse, Mélanie Lelievre, et al.. Biogeographical patterns of soil microbial communities at the scale of French metropolitan territory. 13. International Symposium on Microbial Ecology ISME 13, Aug 2010, Seattle, United States. 1 p. ⟨hal-01137003⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Jean Thioulouse, Claudy Jolivet, Nicolas Saby, et al.. Microbial-biogeography at the scale of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS). BAGECO10, Saisissez le nom du laboratoire, du service ou du département., Ville service., Jun 2009, Uppsala, Sweden. ⟨hal-02751274⟩

Nicolas Saby, Claudy Jolivet, Line Boulonne, Céline Ratié, Ben P. Marchant, et al.. Prédiction des propriétés du sol à l’échelle nationale à partir des données du RMQS : Exemple des Éléments Trace Métalliques. 10. Journées d'Etude des Sols, May 2009, Strasbourg, France. ⟨hal-02757800⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Manuel Martin, Nicolas Saby, et al.. Patterns biogéographiques de la diversité bactérienne des sols à l'échelle du territoire national. Congrès AFEM (Association Francophone pour l'Ecologie Microbienne, Labo/service de l'auteur, Ville service., Aug 2009, Lyon, France. n.p. ⟨hal-01001184⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Manuel Martin, Nicolas Saby, et al.. Diversité des communautés microbiennes telluriques à l'échelle du territoire national. Journées d'Etude des Sols, May 2009, Strasbourg, France. pp.151-152. ⟨hal-00858576⟩

Nicolas Chemidlin Prévost-Bouré, Samuel Dequiedt, Rémy Doyen, Mélanie Lelievre, Claudy Jolivet, et al.. Distribution et déterminisme de la diversité des communautés de champignons telluriques à l'échelle de trois régions françaises. 4. Colloque de l'Association Francophone d'Ecologie Microbienne, Association Francophone d'Ecologie Microbienne (AFEM). FRA., Aug 2009, Lyon, France. pp.91. ⟨hal-01019301⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Dominique Arrouays, Nicolas Saby, et al.. Ecomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France. 4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Aug 2009, Lyon, France. 1 p. ⟨hal-00999813⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Manuel Martin, Nicolas Saby, et al.. Diversité des communautés microbiennes telluriques à l'échelle du territoire national. Journées d'Etude des Sols, May 2009, Strasbourg, France. pp.151-152. ⟨hal-01019730⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Dominique Arrouays, Nicolas Saby, et al.. Ecomic - RMQs : Cartographie de la diversité microbienne des sols à l'échelle de la France. 4ème Colloque de l'Association Francophone d'Ecologie Microbienne (AFEM), Aug 2009, Lyon, France. 1 p. ⟨hal-00858575⟩

Lionel Ranjard, Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Nicolas Saby, et al.. Microbial-biogeography of France by the use of molecular tools applied to the French soil quality monitoring network (RMQS). Eurosoil 2008, Labo/service de l'auteur, Ville service, Pays service., Aug 2008, Vienne, Austria. pp.59-60. ⟨hal-00999912⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Manuel Martin, Nicolas Saby, et al.. Microbiogéographie à l'échelle du territoire national. AFEM (Association Francophone d'Ecologie Microbienne), Labo/service de l'auteur, Ville service, Pays service., Oct 2007, La Grande Motte-Montpellier, France. n.p. ⟨hal-00999960⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Manuel Martin, Nicolas Saby, et al.. Le projet ECOMIC-RMQS ou comment faire de la microbiogéographie à l'échelle de la France. Journées d'animations scientifiques des ORE ACBB, Labo/service de l'auteur, Ville service, Pays service., Sep 2007, Lusignan, France. n.p. ⟨hal-01019403⟩

Robin Duponnois, Christian Plenchette, Jean Thioulouse, Patrice Cadet. Approche qualitative et quantitative de l'effet de la jachère sur des populations de champignons mycorhiziens à arbuscules. Le sol, milieu vivant : fonctionnement et gestion, Feb 1999, Versailles, France. ⟨hal-02768970⟩

Samuel Dequiedt, Mélanie Lelievre, Claudy Jolivet, Dominique Arrouays, Manuel Martin, et al.. Influence du type de sol et du mode d’occupation des sols sur la quantité d’ADN extraite et la densité des communautés bactériennes indigènes. AFEM (Association Francophone d'Ecologie Microbienne), Oct 2007, La Grande Motte-Montpellier, France. n.p., 2008. ⟨hal-02821265⟩

Jean Thioulouse, Stéphane Dray, Anne-Béatrice Dufour, Aurélie Siberchicot, Thibaut Jombart, et al.. Multivariate Analysis of Ecological Data with ade4. Springer New York, 2018, ⟨10.1007/978-1-4939-8850-1⟩. ⟨hal-02309884⟩

Jean Thioulouse, H. Sanguin, Yves Prin, Robin Duponnois. Méthodes d'analyse multivariée pour l'étude de l'influence de la mycorhizosphère sur la structure et le fonctionnement des communautés bactériennes du sol. Robin Duponnois; M. Hafidi; I. Ndoye; H. Ramanankierana; A. M. Bâ. Des champignons symbiotiques contre la désertification. Ecosystèmes mediterranéens, tropicaux et insulaires, IRD Editions, pp.474-508, 2013, 978-2-7099-1949-4. ⟨hal-02099942⟩

Lionel Ranjard, Samuel Dequiedt, Claudy Jolivet, Nicolas Saby, Jean Thioulouse, et al.. Biogeography of soil microbial communities: a review and a description of the ongoing french national initiative. Sustainable Agriculture Volume 2, Springer, pp.857-865, 2011, 978-94-007-0393-3. ⟨10.1007/978-94-007-0394-0_37⟩. ⟨hal-00860770⟩