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Glycan classification with tree kernels.
Yoshihiro Yamanishi
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00433576v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
2016
Pré-publication, Document de travail
hal-01279273v2
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WHInter: A Working set algorithm for High-dimensional sparse second order Interaction models.
Marine Le Morvan
,
Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.3635--3644
Communication dans un congrès
hal-01711018v1
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Epitope prediction improved by multitask support vector machines
Laurent Jacob
,
Jean-Philippe Vert
2007
Autre publication scientifique
hal-00129062v1
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Relating Leverage Scores and Density using Regularized Christoffel Functions
Edouard Pauwels
,
Francis Bach
,
Jean-Philippe Vert
32nd Conference on Neural Information Processing Systems (NIPS 2018), Dec 2018, Montréal, Canada. pp.1-21
Communication dans un congrès
hal-01796591v2
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The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures
Anne-Claire Haury
,
Pierre Gestraud
,
Jean-Philippe Vert
Article dans une revue
hal-00559580v2
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Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Jean-Philippe Vert
,
William Stafford Noble
,
et al.
Article dans une revue
hal-01246696v1
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Joint segmentation of many aCGH profiles using fast group LARS
Kevin Bleakley
,
Jean-Philippe Vert
2009
Pré-publication, Document de travail
hal-00422430v1
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Phi-score: A cell-to-cell phenotypic scoring method for sensitive and selective hit discovery in cell-based assays
Laurent Guyon
,
Christian Lajaunie
,
Frédéric Fer
,
Ricky Bhajun
,
Eric Sulpice
,
et al.
Article dans une revue
hal-01246683v1
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Changes in gene expression control by DNA methylation in cancer
Matahi Moarii
,
Valentina Boeva
,
Jean-Philippe Vert
,
Fabien Reyal
Article dans une revue
hal-01246674v1
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
Neural Information Processing Systems, Dec 2014, Montreal, Canada. pp.3284-3292
Communication dans un congrès
hal-01101878v1
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Inference of genome 3D architecture by modeling overdispersion of Hi-C data
Nelle Varoquaux
,
William Noble
,
Jean-Philippe Vert
2021
Pré-publication, Document de travail
hal-03375900v1
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Reverse-Complement Equivariant Networks for DNA Sequences
Vincent Mallet
,
Jean-Philippe Vert
2022
Pré-publication, Document de travail
hal-03510326v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
Article dans une revue
hal-01679012v1
|
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Supervised reconstruction of biological networks with local models.
Kevin Bleakley
,
Gérard Biau
,
Jean-Philippe Vert
Article dans une revue
hal-00433575v1
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Classification of microarray data using gene networks.
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
Article dans une revue
hal-00433577v1
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Spectral analysis of gene expression profiles using gene networks
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
2006
Pré-publication, Document de travail
hal-00021785v1
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Classification of arrayCGH data using fused SVM.
Franck Rapaport
,
Emmanuel Barillot
,
Jean-Philippe Vert
Article dans une revue
inserm-00293893v1
|
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples
Fantine Mordelet
,
Jean-Philippe Vert
2011
Pré-publication, Document de travail
hal-00594774v1
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Large-scale machine learning for metagenomics sequence classification
Kevin Vervier
,
Pierre Mahé
,
Maud Tourmoud
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
Bioinformatics, 2016, 32 (7), pp.1023-32
Article dans une revue
hal-01420829v1
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Support vector machine prediction of signal peptide cleavage site using a new class of kernels for strings.
Jean-Philippe Vert
Pacific Symposium on Biocomputing, 2002, pp.649-60
Article dans une revue
hal-00433593v1
|
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A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.
Brice Hoffmann
,
Mikhail Zaslavskiy
,
Jean-Philippe Vert
,
Véronique Stoven
Article dans une revue
inserm-00663528v1
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Metric learning pairwise kernel for graph inference
Jean-Philippe Vert
,
Jian Qiu
,
William Noble
2006
Pré-publication, Document de travail
hal-00108477v1
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A new pairwise kernel for biological network inference with support vector machines.
Jean-Philippe Vert
,
Jian Qiu
,
William S Noble
Article dans une revue
hal-00433573v1
|
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kernelPSI: a Post-Selection Inference Framework for Nonlinear Variable Selection
Lotfi Slim
,
Clement Chatelain
,
Chloé-Agathe Azencott
,
Jean-Philippe Vert
36th International Conference on Machine Learning (ICML 2019), Jun 2019, Long Beach, CA, United States
Communication dans un congrès
hal-02441304v1
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Tuning parameters of dimensionality reduction methods for single-cell RNA-seq analysis
Felix Raimundo
,
Celine Vallot
,
Jean-Philippe Vert
Article dans une revue
hal-02945105v1
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Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Sebastiaan M. Bol
,
Jacques Prudhomme
,
et al.
Article dans une revue
hal-01101873v1
|
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
2014
Pré-publication, Document de travail
hal-01025959v3
|
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An accurate and interpretable model for siRNA efficacy prediction.
Jean-Philippe Vert
,
Nicolas Foveau
,
Christian Lajaunie
,
Yves Vandenbrouck
Article dans une revue
hal-00433579v1
|
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
Nature Communications, 2018, 9 (1)
Article dans une revue
hal-01985432v1
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