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Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Jean-Philippe Vert
Article dans une revue
hal-00803134v3
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The Wnt Receptor Ryk Reduces Neuronal and Cell Survival Capacity by Repressing FOXO Activity During the Early Phases of Mutant Huntingtin Pathogenicity
Cendrine Tourette
,
Francesca Farina
,
Rafael P. Vasquez-Manrique
,
Anne-Marie Orfila
,
Jessica Voisin
,
et al.
Article dans une revue
hal-01076146v1
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Large-scale functional RNAi screen in C. elegans identifies genes that regulate the dysfunction of mutant polyglutamine neurons.
François-Xavier Lejeune
,
Lilia Mesrob
,
Frédéric Parmentier
,
Cedric Bicep
,
Rafael Vazquez-Manrique
,
et al.
Article dans une revue
inserm-00690001v1
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SegAnnDB: interactive web-based genomic segmentation
Toby D. Hocking
,
Valentina Boeva
,
Guillem Rigaill
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
et al.
Article dans une revue
hal-01101868v1
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Graph kernels based on tree patterns for molecules
Pierre Mahé
,
Jean-Philippe Vert
2006
Pré-publication, Document de travail
hal-00095488v1
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Kernel Multitask Regression for Toxicogenetics
Elsa Bernard
,
Yunlong Jiao
,
Erwan Scornet
,
Véronique Stoven
,
Thomas Walter
,
et al.
Article dans une revue
hal-01679030v1
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Reconstruction of biological networks by supervised machine learning approaches
Jean-Philippe Vert
2008
Pré-publication, Document de travail
hal-00283945v2
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Machine learning for in silico virtual screening and chemical genomics: new strategies.
Jean-Philippe Vert
,
Laurent Jacob
Combinatorial Chemistry and High Throughput Screening, 2008, 11 (8), pp.677-85
Article dans une revue
hal-00433569v1
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A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Eric Viara
,
Jean-Philippe Vert
Article dans une revue
hal-01123141v3
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Integrative DNA methylation and gene expression analysis to assess the universality of the CpG island methylator phenotype
Matahi Moarii
,
Fabien Reyal
,
Jean-Philippe Vert
Article dans une revue
hal-01246676v1
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Clustered Multi-Task Learning: A Convex Formulation
Laurent Jacob
,
Francis Bach
,
Jean-Philippe Vert
2008
Pré-publication, Document de travail
hal-00320573v1
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The group fused Lasso for multiple change-point detection
Kevin Bleakley
,
Jean-Philippe Vert
2011
Pré-publication, Document de travail
hal-00602121v1
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A path following algorithm for the graph matching problem.
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00433567v1
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Many-to-Many Graph Matching: a Continuous Relaxation Approach
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
2009
Pré-publication, Document de travail
hal-00465916v1
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A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction.
Brice Hoffmann
,
Mikhail Zaslavskiy
,
Jean-Philippe Vert
,
Véronique Stoven
Article dans une revue
inserm-00663528v1
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A general and flexible method for signal extraction from single-cell RNA-seq data
Davide Risso
,
Fanny Perraudeau
,
Svetlana Gribkova
,
Sandrine Dudoit
,
Jean-Philippe Vert
Nature Communications, 2018, 9 (1)
Article dans une revue
hal-01985432v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
Article dans une revue
hal-01679012v1
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An accurate and interpretable model for siRNA efficacy prediction.
Jean-Philippe Vert
,
Nicolas Foveau
,
Christian Lajaunie
,
Yves Vandenbrouck
Article dans une revue
hal-00433579v1
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Classification of arrayCGH data using fused SVM.
Franck Rapaport
,
Emmanuel Barillot
,
Jean-Philippe Vert
Article dans une revue
inserm-00293893v1
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CloneSig can jointly infer intra-tumor heterogeneity and mutational signature activity in bulk tumor sequencing data
Judith Abécassis
,
Fabien Reyal
,
Jean-Philippe Vert
Article dans une revue
hal-03510272v1
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A new pairwise kernel for biological network inference with support vector machines.
Jean-Philippe Vert
,
Jian Qiu
,
William S Noble
Article dans une revue
hal-00433573v1
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Classification of microarray data using gene networks.
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
Article dans une revue
hal-00433577v1
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Three-dimensional modeling of the P. falciparum genome during the erythrocytic cycle reveals a strong connection between genome architecture and gene expression
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Sebastiaan M. Bol
,
Jacques Prudhomme
,
et al.
Article dans une revue
hal-01101873v1
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Metric learning pairwise kernel for graph inference
Jean-Philippe Vert
,
Jian Qiu
,
William Noble
2006
Pré-publication, Document de travail
hal-00108477v1
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Large-scale machine learning for metagenomics sequence classification
Kevin Vervier
,
Pierre Mahé
,
Maud Tourmoud
,
Jean-Baptiste Veyrieras
,
Jean-Philippe Vert
Bioinformatics, 2016, 32 (7), pp.1023-32
Article dans une revue
hal-01420829v1
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kernelPSI: a Post-Selection Inference Framework for Nonlinear Variable Selection
Lotfi Slim
,
Clement Chatelain
,
Chloé-Agathe Azencott
,
Jean-Philippe Vert
36th International Conference on Machine Learning (ICML 2019), Jun 2019, Long Beach, CA, United States
Communication dans un congrès
hal-02441304v1
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Spectral analysis of gene expression profiles using gene networks
Franck Rapaport
,
Andrei Zinovyev
,
Marie Dutreix
,
Emmanuel Barillot
,
Jean-Philippe Vert
2006
Pré-publication, Document de travail
hal-00021785v1
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Supervised reconstruction of biological networks with local models.
Kevin Bleakley
,
Gérard Biau
,
Jean-Philippe Vert
Article dans une revue
hal-00433575v1
|
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
2014
Pré-publication, Document de travail
hal-01025959v3
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ProDiGe: PRioritization Of Disease Genes with multitask machine learning from positive and unlabeled examples
Fantine Mordelet
,
Jean-Philippe Vert
2011
Pré-publication, Document de travail
hal-00594774v1
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