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Efficient RNA Isoform Identification and Quantification from RNA-Seq Data with Network Flows
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Jean-Philippe Vert
Article dans une revue
hal-00803134v3
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Integrative DNA methylation and gene expression analysis to assess the universality of the CpG island methylator phenotype
Matahi Moarii
,
Fabien Reyal
,
Jean-Philippe Vert
Article dans une revue
hal-01246676v1
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Clustered Multi-Task Learning: A Convex Formulation
Laurent Jacob
,
Francis Bach
,
Jean-Philippe Vert
2008
Pré-publication, Document de travail
hal-00320573v1
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A convex formulation for joint RNA isoform detection and quantification from multiple RNA-seq samples
Elsa Bernard
,
Laurent Jacob
,
Julien Mairal
,
Eric Viara
,
Jean-Philippe Vert
Article dans une revue
hal-01123141v3
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Reconstruction of biological networks by supervised machine learning approaches
Jean-Philippe Vert
2008
Pré-publication, Document de travail
hal-00283945v2
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The group fused Lasso for multiple change-point detection
Kevin Bleakley
,
Jean-Philippe Vert
2011
Pré-publication, Document de travail
hal-00602121v1
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The Wnt Receptor Ryk Reduces Neuronal and Cell Survival Capacity by Repressing FOXO Activity During the Early Phases of Mutant Huntingtin Pathogenicity
Cendrine Tourette
,
Francesca Farina
,
Rafael P. Vasquez-Manrique
,
Anne-Marie Orfila
,
Jessica Voisin
,
et al.
Article dans une revue
hal-01076146v1
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Large-scale functional RNAi screen in C. elegans identifies genes that regulate the dysfunction of mutant polyglutamine neurons.
François-Xavier Lejeune
,
Lilia Mesrob
,
Frédéric Parmentier
,
Cedric Bicep
,
Rafael Vazquez-Manrique
,
et al.
Article dans une revue
inserm-00690001v1
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Machine learning for in silico virtual screening and chemical genomics: new strategies.
Jean-Philippe Vert
,
Laurent Jacob
Combinatorial Chemistry and High Throughput Screening, 2008, 11 (8), pp.677-85
Article dans une revue
hal-00433569v1
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Kernel Multitask Regression for Toxicogenetics
Elsa Bernard
,
Yunlong Jiao
,
Erwan Scornet
,
Véronique Stoven
,
Thomas Walter
,
et al.
Article dans une revue
hal-01679030v1
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SegAnnDB: interactive web-based genomic segmentation
Toby D. Hocking
,
Valentina Boeva
,
Guillem Rigaill
,
Gudrun Schleiermacher
,
Isabelle Janoueix-Lerosey
,
et al.
Article dans une revue
hal-01101868v1
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Graph kernels based on tree patterns for molecules
Pierre Mahé
,
Jean-Philippe Vert
2006
Pré-publication, Document de travail
hal-00095488v1
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A path following algorithm for the graph matching problem.
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00433567v1
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Many-to-Many Graph Matching: a Continuous Relaxation Approach
Mikhail Zaslavskiy
,
Francis Bach
,
Jean-Philippe Vert
2009
Pré-publication, Document de travail
hal-00465916v1
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Changes in gene expression control by DNA methylation in cancer
Matahi Moarii
,
Valentina Boeva
,
Jean-Philippe Vert
,
Fabien Reyal
Article dans une revue
hal-01246674v1
|
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WHInter: A Working set algorithm for High-dimensional sparse second order Interaction models.
Marine Le Morvan
,
Jean-Philippe Vert
35th International Conference on Machine Learning, Jul 2018, Stockholm, Sweden. pp.3635--3644
Communication dans un congrès
hal-01711018v1
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Inference of genome 3D architecture by modeling overdispersion of Hi-C data
Nelle Varoquaux
,
William Noble
,
Jean-Philippe Vert
2021
Pré-publication, Document de travail
hal-03375900v1
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Reverse-Complement Equivariant Networks for DNA Sequences
Vincent Mallet
,
Jean-Philippe Vert
2022
Pré-publication, Document de travail
hal-03510326v1
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Tight convex relaxations for sparse matrix factorization
Emile Richard
,
Guillaume Obozinski
,
Jean-Philippe Vert
Neural Information Processing Systems, Dec 2014, Montreal, Canada. pp.3284-3292
Communication dans un congrès
hal-01101878v1
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The Kendall and Mallows Kernels for Permutations
Yunlong Jiao
,
Jean-Philippe Vert
2016
Pré-publication, Document de travail
hal-01279273v2
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Joint segmentation of many aCGH profiles using fast group LARS
Kevin Bleakley
,
Jean-Philippe Vert
2009
Pré-publication, Document de travail
hal-00422430v1
|
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Multiple dimensions of epigenetic gene regulation in the malaria parasite Plasmodium falciparum
Ferhat Ay
,
Evelien M. Bunnik
,
Nelle Varoquaux
,
Jean-Philippe Vert
,
William Stafford Noble
,
et al.
Article dans une revue
hal-01246696v1
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Epitope prediction improved by multitask support vector machines
Laurent Jacob
,
Jean-Philippe Vert
2007
Autre publication scientifique
hal-00129062v1
|
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The influence of feature selection methods on accuracy, stability and interpretability of molecular signatures
Anne-Claire Haury
,
Pierre Gestraud
,
Jean-Philippe Vert
Article dans une revue
hal-00559580v2
|
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Glycan classification with tree kernels.
Yoshihiro Yamanishi
,
Francis Bach
,
Jean-Philippe Vert
Article dans une revue
hal-00433576v1
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Phi-score: A cell-to-cell phenotypic scoring method for sensitive and selective hit discovery in cell-based assays
Laurent Guyon
,
Christian Lajaunie
,
Frédéric Fer
,
Ricky Bhajun
,
Eric Sulpice
,
et al.
Article dans une revue
hal-01246683v1
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Relating Leverage Scores and Density using Regularized Christoffel Functions
Edouard Pauwels
,
Francis Bach
,
Jean-Philippe Vert
32nd Conference on Neural Information Processing Systems (NIPS 2018), Dec 2018, Montréal, Canada. pp.1-21
Communication dans un congrès
hal-01796591v2
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Changes in genome organization of parasite-specific gene families during the Plasmodium transmission stages
Evelien Bunnik
,
Kate Cook
,
Nelle Varoquaux
,
Gayani Batugedara
,
Jacques Prudhomme
,
et al.
Nature Communications, 2018, 9 (1)
Article dans une revue
hal-01985437v1
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A community effort to assess and improve drug sensitivity prediction algorithms
James C Costello
,
Laura M Heiser
,
Elisabeth Georgii
,
Mehmet Gönen
,
Michael P Menden
,
et al.
Article dans une revue
hal-01101874v1
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Continuous Embeddings of DNA Sequencing Reads and Application to Metagenomics
Romain Menegaux
,
Jean-Philippe Vert
Article dans une revue
hal-02444747v1
|
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