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Thomas Brazier, Emira Cherif, Jean-François Martin, André Gilles, Simon Blanchet, et al.. The influence of native populations' genetic history on the reconstruction of invasion routes: the case of a highly invasive aquatic species. Biological Invasions, Springer Verlag, In press, ⟨10.1007/s10530-022-02787-6⟩. ⟨hal-03656986⟩

Johannes Tavoillot, Thierry Mateille, Nadine Ali, Anne-Marie Chappé, Jean-François Martin. Early Detection of the Root-Knot Nematode Meloidogyne hapla Through Developing a Robust Quantitative PCR Approach Compliant With the Minimum Information for Publication of Quantitative Real-Time PCR Experiments Guidelines. Plant Disease, American Phytopathological Society, 2021, 105 (10), pp.2836-2843. ⟨10.1094/PDIS-11-20-2408-RE⟩. ⟨hal-03374345⟩

Mélodie Ollivier, Vincent Lesieur, Johannes Tavoillot, Fanny Bénetière, Marie‐stéphane Tixier, et al.. Metabarcoding and ecological interaction networks for selecting candidate biological control agents. Journal of Applied Ecology, Wiley, 2021, 58 (12), pp.2866-2880. ⟨10.1111/1365-2664.14016⟩. ⟨hal-03695123⟩

Nathalie Bonvallot, Emilien L. Jamin, L. Regnaut, Jean-François Martin, C. Chevrier, et al.. Suspect screening and targeted analyses: Two complementary approaches to characterize human exposure to pesticides. Science of the Total Environment, Elsevier, 2021, 786, pp.147499. ⟨10.1016/j.scitotenv.2021.147499⟩. ⟨hal-03268812⟩

Lucie Schmiedová, Jakub Kreisinger, Milica Požgayová, Marcel Honza, Jean-François Martin, et al.. Gut microbiota in a host–brood parasite system: insights from common cuckoos raised by two warbler species. FEMS Microbiology Ecology, Wiley-Blackwell, 2020, 96 (9), pp.fiaa143. ⟨10.1093/femsec/fiaa143⟩. ⟨hal-02975154⟩

Mélodie Ollivier, Elena Kazakou, Maxime Corbin, Kevin Sartori, Ben Gooden, et al.. Trait differentiation between native and introduced populations of the invasive plant Sonchus oleraceus L. (Asteraceae). NeoBiota, Pensoft Publishers, 2020, 55, pp.85-115. ⟨10.3897/neobiota.55.49158⟩. ⟨hal-02562275⟩

Barbora Bendová, Jaroslav Pialek, Ľudovít Ďureje, Lucie Schmiedová, Dagmar Čížková, et al.. How being synanthropic affects the gut bacteriome and mycobiome: comparison of two mouse species with contrasting ecologies. BMC Microbiology, BioMed Central, 2020, 20 (1), ⟨10.1186/s12866-020-01859-8⟩. ⟨hal-02908216⟩

Mélodie Ollivier, Vincent Lesieur, Sathyamurthy Raghu, Jean-François Martin. Characterising ecological interaction networks to support risk assessment in classical biological control of weeds. Current Opinion in Insect Science, Elsevier, 2020, 38, pp.40-47. ⟨10.1016/j.cois.2019.12.002⟩. ⟨hal-02622752⟩

Emmanuel Guivier, Jean-François Martin, Nicolas Pech, Arnaud Ungaro, Rémi Chappaz, et al.. Microbiota Diversity Within and Between the Tissues of Two Wild Interbreeding Species. Microbial ecology, Springer Verlag, 2018, 75 (3), pp.799-810. ⟨10.1007/s00248-017-1077-9⟩. ⟨hal-02270253⟩

Vincent Lesieur, Jean-François Martin, Hinz L Hariet, Boris B. Fumanal, Sobhian Rouhollah, et al.. Implications of a phylogeographic approach for the selection of Ceutorhynchus assimilis as a potential biological control agent for Lepidium draba. Biological Control, Elsevier, 2018, 123, pp.43-52. ⟨10.1016/j.biocontrol.2018.05.001⟩. ⟨hal-02270252⟩

Jakub Kreisinger, Lucie Schmiedová, Adéla Petrželková, Oldřich Tomášek, Marie Adamkova, et al.. Fecal microbiota associated with phytohaemagglutinin-induced immune response in nestlings of a passerine bird. Ecology and Evolution, Wiley Open Access, 2018, 8 (19), pp.9793-9802. ⟨10.1002/ece3.4454⟩. ⟨hal-02270244⟩

Lucie Kropáčková, Hana Pechmanová, Michal Vinkler, Jana Svobodová, Hana Velová, et al.. Variation between the oral and faecal microbiota in a free-living passerine bird, the great tit (Parus major). PLoS ONE, Public Library of Science, 2017, 12 (6), pp.e0179945. ⟨10.1371/journal.pone.0179945⟩. ⟨hal-02336539v2⟩

Arnaud Ungaro, Nicolas Pech, Jean-François Martin, R. J. Scott Mccairns, Jean-Philippe Mevy, et al.. Challenges and advances for transcriptome assembly in non-model species. PLoS ONE, Public Library of Science, 2017, 12 (9), pp.e0185020. ⟨10.1371/journal.pone.0185020⟩. ⟨hal-01681642⟩

M.E. Maggia, y. Vigouroux, J. F. Renno, F. Duponchelle, E. Desmarais, et al.. DNA Metabarcoding of Amazonian Ichthyoplankton Swarms. PLoS ONE, Public Library of Science, 2017, 12 (1), pp.e0170009. ⟨10.1371/journal.pone.0170009⟩. ⟨hal-01470522⟩

Emmanuel Corse, Emese Meglecz, Gait Archambaud, Morgane Ardisson, Jean-François Martin, et al.. A from-benchtop-to-desktop workflow for validating HTS data and for taxonomic identification in diet metabarcoding studies. Molecular Ecology Resources, Wiley/Blackwell, 2017, 17 (6), pp.e146-e159. ⟨10.1111/1755-0998.12703⟩. ⟨hal-01681595⟩

Lucie Kropackova, Adela Petrzelkova, Oldrich Tomasek, Tomas Albrecht, Clarissa Schwab, et al.. Temporal Stability and the Effect of Transgenerational Transfer on Fecal Microbiota Structure in a Long Distance Migratory Bird. Frontiers in Microbiology, Frontiers Media, 2017, 8, ⟨10.3389/fmicb.2017.00050⟩. ⟨hal-01600971⟩

Vincent Lesieur, Jean-François Martin, David Weaver, Kim A Hoelmer, David Smith, et al.. Phylogeography of the Wheat Stem Sawfly, Cephus cinctus Norton (Hymenoptera: Cephidae): Implications for Pest Management. PLoS ONE, Public Library of Science, 2016, 11 (12), pp.e0168370. ⟨10.1371/journal.pone.0168370⟩. ⟨hal-02336540⟩

V. Lesieur, M. Jeanneau, Jean-François Martin, Marie-Claude Bon. Development and characterization of 11 microsatellite markers in the root-gall-forming weevil, Ceutorhynchus assimilis (Coleoptera: Curculionidae). Applied Entomology and Zoology, Springer Verlag, 2016, 51 (3), pp.495 - 500. ⟨10.1007/s13355-016-0414-7⟩. ⟨hal-01601364⟩

Anne Fraimout, Anne Loiseau, Donald K. Price, Anne Xuéreb, Jean-François Martin, et al.. New set of microsatellite markers for the spotted-wing Drosophila suzukii (Diptera: Drosophilidae): a promising molecular tool for inferring the invasion history of this major insect pest. European Journal of Entomology, Czech Entomological Society, 2015, 112, pp.855-859. ⟨hal-02631599⟩

Grégory Mollot, Pierre-François Duyck, Pierre Lefeuvre, Francoise Lescourret, Jean-François Martin, et al.. Cover Cropping Alters the Diet of Arthropods in a Banana Plantation: A Metabarcoding Approach. PLoS ONE, Public Library of Science, 2014, 9 (4), ⟨10.1371/journal.pone.0093740⟩. ⟨hal-01189949⟩

Emese Meglécz, Nicolas Pech, André Gilles, Vincent Dubut, Pascal Hingamp, et al.. QDD version 3.1: a user-friendly computer program for microsatellite selection and primer design revisited: experimental validation of variables determining genotyping success rate. Molecular Ecology Resources, Wiley/Blackwell, 2014, 14 (6), pp.1302-1313. ⟨10.1111/1755-0998.12271⟩. ⟨hal-02356473⟩

Sylvain Piry, Emmanuel Guivier, A. Realini, Jean-François Martin. |SE|S|AM|E| Barcode: NGS-oriented software for amplicon characterization - application to species and environmental barcoding. Molecular Ecology Resources, Wiley/Blackwell, 2012, 12 (6), pp.1151-1157. ⟨10.1111/j.1755-0998.2012.03171.x⟩. ⟨hal-01506133⟩

Pierre-Jean Male, Jean-François Martin, Maxime Galan, Valérie Deffontaine, Josef Bryja, et al.. Discongruence of Mhc and cytochrome b phylogeographical patterns in Myodes glareolus (Rodentia: Cricetidae). Biological Journal of the Linnean Society, Linnean Society of London, 2012, 105 (4), pp.881-899. ⟨10.1111/j.1095-8312.2011.01799.x⟩. ⟨hal-01506086⟩

Emese Meglécz, Nicolas Pech, André Gilles, Jean-François Martin, Michael G Gardner. A shot in the genome: how accurately do shotgun 454 sequences represent a genome?. BMC Research Notes, BioMed Central, 2012, 5 (1), pp.259. ⟨10.1186/1756-0500-5-259⟩. ⟨hal-02356481⟩

Emese Meglécz, Sylvain Piry, Erick Desmarais, Maxime Galan, André Gilles, et al.. SESAME (SEquence Sorter & AMplicon Explorer): genotyping based on high-throughput multiplex amplicon sequencing. Bioinformatics, Oxford University Press (OUP), 2011, 27 (2), pp.277-278. ⟨10.1093/bioinformatics/btq641⟩. ⟨hal-02356496⟩

André Gilles, Emese Meglécz, Nicolas Pech, Stéphanie Ferreira, Thibaut Malausa, et al.. Accuracy and quality assessment of 454 GS-FLX Titanium pyrosequencing. BMC Genomics, BioMed Central, 2011, 12 (1), ⟨10.1186/1471-2164-12-245⟩. ⟨hal-01995051⟩

Thibaut Malausa, André Gilles, Emese Meglécz, Hélène Blancard, Stéphanie Duthoy, et al.. High-throughput microsatellite isolation through 454 GS-FLX Titanium pyrosequencing of enriched DNA libraries. Molecular Ecology Resources, Wiley/Blackwell, 2011, 11 (4), pp.638-644. ⟨10.1111/j.1755-0998.2011.02992.x⟩. ⟨hal-01506135⟩

Vincent Dubut, Rémi Grenier, Emese Meglécz, Rémi Chappaz, Caroline Costedoat, et al.. Development of 55 novel polymorphic microsatellite loci for the critically endangered L. (Actinopterygii: Perciformes: Percidae) and cross-species amplification in five other percids. European Journal of Wildlife Research, Springer Verlag, 2010, 56 (6), pp.931-938. ⟨10.1007/s10344-010-0421-x⟩. ⟨hal-00609749⟩

Vincent Dubut, Melthide Sinama, Jean-François Martin, Emese Meglecz, Juliette Fernandez, et al.. Cross-species amplification of 41 microsatellites in European cyprinids: A tool for evolutionary, population genetics and hybridization studies. BMC Research Notes, BioMed Central, 2010, 3. ⟨hal-01933480⟩

Eva Ottová, Andrea Simková, Jean-François Martin, Joëlle Goüy de Bellocq, Milan Gelnar, et al.. Evolution and trans-species polymorphism of MHC class IIbeta genes in cyprinid fish.. Fish and Shellfish Immunology, Elsevier, 2005, 18 (3), pp.199-222. ⟨10.1016/j.fsi.2004.07.004⟩. ⟨hal-00104518⟩

Boris Fumanal, Jean-François Martin, Rouhollah Sobhian, Arnaud Blanchet, Marie-Claude Bon. Host range of Ceutorhynchus assimilis (Coleoptera: Curculionidae), a candidate for biological control of Lepidium draba (Brassicaceae) in the USA. Biological Control, Elsevier, 2004, 30 (3), pp.598-607. ⟨10.1016/j.biocontrol.2004.03.001⟩. ⟨hal-03091849⟩

D. Navia, Marie-Stéphane M.-S. Tixier, F. Ferragut, Jean-François Martin. Unveiling the diet of predatory mites through DNA metabarcoding. IOBC Vienna 2019 Working Group "Integrated Control of Plant-Feeding Mites", Nov 2019, Vienna, Austria. ⟨hal-02790082⟩

Mélodie Ollivier, Vincent Lesieur, M. Jourdan, T. Thomann, S. Raghu, et al.. Molecular analysis of ecological interactions for optimizing biocontrol prospection of the invasive weed Sonchus oleraceus L. (Asteraceae). 21. Australasian Weeds Conference, Sep 2018, Sydney, Australia. ⟨hal-02787832⟩

Mélodie Ollivier, Vincent Lesieur, M. Jourdan, T. Thomann, Sathyamurthy Raghu, et al.. Molecular analysis of ecological interactions for optimizing biocontrol prospection of the invasive weed Sonchus oleraceus L. (Asteraceae). 15. International Symposium on Biological Control of Weed, European Station of the Commonwealth Institute of Biological Control., Aug 2018, Engelberg, Switzerland. ⟨hal-02735146⟩

Vincent Lesieur, T. Thomann, M. Jourdan, Mélodie Ollivier, A. Sheppard, et al.. Biological control of Sonchus oleraceus: what is known, what is new and what is still missing?. 21. Australasian Weeds Conference, Sep 2017, Sydney, Australia. ⟨hal-02787833⟩

Marie-Stéphane M.-S. Tixier, Jean-François Martin. Metabarcoding for rapidly identifying Phytoseiidae predatory mite species. IOBC congress Chania Working Group "Integrated Control of Plant-Feeding Mites", Sep 2017, Chania, Greece. ⟨hal-02785745⟩

Christophe Amidi Diagne, Lucie Tamisier, Khalilou Ba, Nathalie Charbonnel, Jean-Francois J.-F. Cosson, et al.. Rôle des parasites dans le succès d’invasion : approche corrélative sur deux communautés parasitaires dans le contexte de l’invasion de Mus musculus domesticus au Sénégal. 12th African Small mammals Symposium, Apr 2015, Mantasoa, Madagascar. ⟨hal-02800359⟩

Civáňová K, Vetešníková A, A. Simkova, C Costedoat, Gilles André, et al.. Variability, structure and selection of MHCIIB genes in Chondrostoma toxostoma and Chondrostoma nasus in hybrid zones. XIV European Congres of Ichthyology, 2012, Liege, Belgium. ⟨hal-03533423⟩

Boris Fumanal, Jean-François Martin, Sobhian Rouhollah, John Gaskin, Marie-Claude Bon. Evolutionary biology as a tool towards a more customized biological control strategy of weeds: Lepidium draba as a case study. XIIeme COLLOQUE INTERNATIONAL SUR LA BIOLOGIE DES MAUVAISES HERBES, Aug 2004, Dijon, France. pp.453-458. ⟨hal-03104861⟩

Marie-Dominique Salducci, Jean-François Martin, Nicolas Pech, Remi Chappaz, C Costedoat, et al.. Déchiffrer l'histoire évolutive en utilisant des approches multiples- Implications pour la conservation du blageon, Leuciscus souffia souffia (Téléostei : Cyprinidae). Journées Francophones de Conservation de la Biodiversité, Apr 2003, Villeurbanne, France. ⟨hal-03533468⟩

Caroline Tatard, Maxime Galan, Jean-François Martin, Sarah Madrières, S. Murri, et al.. Etude en condition d'infections expérimentales de l'évolution intra-hôte d'une souche sauvage française du virus Puumala. 21. Journées Francophones de Virologie, Mar 2019, Lyon, France. 1 p., 2019. ⟨hal-02787268⟩

Vincent Lesieur, T. Thomann, M. Jourdan, Mélodie Ollivier, A. Sheppard, et al.. A beautiful flower with a bitter taste, Allium triquetrum L., angled onion: a new biological control program. 15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. 2018. ⟨hal-02735161⟩

Vincent Lesieur, T. Thomann, M. Jourdan, Mélodie Ollivier, A. Sheppard, et al.. Biological control of common sowthistle: what is known, what is new and what is still missing?. 15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. 197 p., 2018, XV International Symposium on Biological Control of Weeds : Abstracts of talks and posters. ⟨hal-02735205⟩

Vincent Lesieur, T. Thomann, M. Jourdan, Mélodie Ollivier, A. Sheppard, et al.. Biological control of Sonchus oleraceus: what is known, what is new and what is still missing?. 15. International Symposium on Biological Control of Weed (ISBCW 2018), Aug 2018, Engelberg, Switzerland. 2018. ⟨hal-02787796⟩

Florence Petit, Arnaud Ungaro, Jean-François Martin, Morgane Ardisson, Bernard Barascud, et al.. Étude de la compatibilité génomique entre deux espèces de cyprinidés et son implication dans la réorganisation du transcriptome chez les hybrides. 6. Rencontres de l'Ichtyologie en France, Mar 2015, Paris, France. 2015, RIF 2015. ⟨hal-02743393⟩

Marie-Dominique Salducci, Jean-François Martin, Nicolas Pech, Remi Chappaz, C Costedoat, et al.. The evolutionary biology of Leuciscus souffia souffia, a french endemic cyprinidae : implication for its conservation. VIIth Evolutionary Biology Meeting, Jun 2003, Marseille, France. ⟨hal-03535710⟩