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Jean Cury

23

Documents

Publications

	dnadna: a deep learning framework for population genetics inference Théophile Sanchez , Erik Madison Bray , Pierre Jobic , Jérémy Guez , Anne-Catherine Letournel Bioinformatics, 2023, 39 (1), ⟨10.1093/bioinformatics/btac765⟩ Article dans une revue hal-03352910v4
	Cultural transmission of reproductive success impacts genomic diversity, coalescent tree topologies and demographic inferences Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance Genetics, 2023, 223 (4), pp.iyad007. ⟨10.1093/genetics/iyad007⟩ Article dans une revue hal-03875721v1
	Simulation of bacterial populations with SLiM Jean Cury , Benjamin C Haller , Guillaume Achaz , Flora Jay Peer Community Journal, 2022, ⟨10.24072/pcjournal.72⟩ Article dans une revue hal-03152153v3
	IntegronFinder 2.0: Identification and Analysis of Integrons across Bacteria, with a Focus on Antibiotic Resistance in Klebsiella Bertrand Néron , Eloi Littner , Matthieu Haudiquet , Amandine Perrin , Jean Cury Microorganisms, 2022, 10 (4), pp.700. ⟨10.3390/microorganisms10040700⟩ Article dans une revue hal-03655020v1
	Systematic and quantitative view of the antiviral arsenal of prokaryotes Florian Tesson , Alexandre Hervé , Ernest Mordret , Marie Touchon , Camille D’humières Nature Communications, 2022, 13 (1), pp.2561. ⟨10.1038/s41467-022-30269-9⟩ Article dans une revue hal-03823827v2
	Deep learning for population size history inference: Design, comparison and combination with approximate Bayesian computation Théophile Sanchez , Jean Cury , Guillaume Charpiat , Flora Jay Molecular Ecology Resources, 2020, ⟨10.1111/1755-0998.13224⟩ Article dans une revue hal-02942328v1
	Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells Julie Dauverd -Girault , Charlène Planchenault , Marine Pons , Caroline Schiavon , Patricia Siguier Journal of Molecular Biology, 2020, 432 (3), pp.745-761. ⟨10.1016/j.jmb.2019.11.027⟩ Article dans une revue hal-02392007v1
	Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement Aleksandra Nivina , Maj Svea Grieb , Céline Loot , David Bikard , Jean Cury Science Advances , 2020, 6 (30), pp.eaay2922. ⟨10.1126/sciadv.aay2922⟩ Article dans une revue hal-03084479v1
	Structure-specific DNA recombination sites: Design, validation, and machine learning–based refinement Aleksandra Nivina , Maj Svea Grieb , Céline Loot , David Bikard , Jean Cury Science Advances , 2020, 6 (30), ⟨10.1126/sciadv.aay2922⟩ Article dans une revue hal-04246916v1
	A simple, reproducible and cost- effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach Camille d'Humières , Marie Touchon , Sara Dion , Jean Cury , Amine Ghozlane Scientific Reports, 2019, ⟨10.1038/s41598-019-47656-w⟩ Article dans une revue hal-02329655v1
	Host Range and Genetic Plasticity Explain the Coexistence of Integrative and Extrachromosomal Mobile Genetic Elements Jean Cury , Pedro De Oliveira , Fernando de La Cruz , Eduardo P C Rocha Molecular Biology and Evolution, 2018, 35 (9), pp.2230-2239. ⟨10.1093/molbev/msy123⟩ Article dans une revue pasteur-02098387v1
	Integrative and conjugative elements and their hosts: composition, distribution and organization Jean Cury , Marie Touchon , Eduardo P. C. Rocha Nucleic Acids Research, 2017, 45 (15), pp.8943 - 8956. ⟨10.1093/nar/gkx607⟩ Article dans une revue pasteur-04076019v1
	The chromosomal organization of horizontal gene transfer in bacteria Pedro H. Oliveira , Marie Touchon , Jean Cury , Eduardo P C Rocha Nature Communications, 2017, 8 (1), pp.841. ⟨10.1038/s41467-017-00808-w⟩ Article dans une revue hal-04325283v1
	Differences in Integron Cassette Excision Dynamics Shape a Trade-Off between Evolvability and Genetic Capacitance Céline Loot , Aleksandra Nivina , Jean Cury , José Antonio Escudero , Magaly Ducos-Galand mBio, 2017, 8 (2), pp.e02296-16. ⟨10.1128/mBio.02296-16⟩ Article dans une revue pasteur-01689524v1
	Evolutionary dynamics and genomic features of the Elizabethkingia anophelis 2015 to 2016 Wisconsin outbreak strain Amandine Perrin , Elise Larsonneur , Ainsley Nicholson , David Edwards , Kristin Gundlach Nature Communications, 2017, 8 (1), pp.15483. ⟨10.1038/ncomms15483⟩ Article dans une revue hal-02613118v1
	Identification and analysis of integrons and cassette arrays in bacterial genomes Jean Cury , Thomas Jové , Marie Touchon , Bertrand Néron , Eduardo Pc Rocha Nucleic Acids Research, 2016, 44 (10), pp.4539 - 4550. ⟨10.1093/nar/gkw319⟩ Article dans une revue pasteur-01374968v1
	Identification of protein secretion systems in bacterial genomes Sophie S. Abby , Jean Cury , Julien Guglielmini , Bertrand Néron , Marie Touchon Scientific Reports, 2016, 6, ⟨10.1038/srep23080⟩ Article dans une revue pasteur-01374967v1
	The genomic diversification of the whole Acinetobacter genus: origins, mechanisms, and consequences. Marie Touchon , Jean Cury , Eun-Jeong Yoon , Lenka Krizova , Gustavo C Cerqueira Genome Biology and Evolution, 2014, 6 (10), pp.2866-82. ⟨10.1093/gbe/evu225⟩ Article dans une revue pasteur-01132634v1

	Understanding and inferring cultural transmission of reproductive success Jérémy Guez , Guillaume Achaz , François Bienvenu , Jean Cury , Bruno Toupance Probabilistic Modeling in Genomics, Mar 2022, Oxford, United Kingdom Poster de conférence hal-04016758v1

	A new route for integron cassette dissemination among bacterial genomes Céline Loot , Gael A Millot , Egill Richard , Claire Vit , Baptiste Darracq 2022 Pré-publication, Document de travail pasteur-03826688v1
	Intracellular positioning systems limit the entropic eviction of secondary replicons toward the nucleoid edges in bacterial cells Charlene Planchenault , Marine Pons , Caroline Schiavon , Patricia Siguier , Jérôme Rech 2019 Pré-publication, Document de travail hal-02366139v1

	Evolutionary genomics of conjugative elements and integrons Jean Cury Human health and pathology. Université Sorbonne Paris Cité, 2017. English. ⟨NNT : 2017USPCB062⟩ Thèse tel-02130756v1

	Identifying Conjugative Plasmids and Integrative Conjugative Elements with CONJscan Jean Cury , Sophie S. Abby , Olivia Doppelt-Azeroual , Bertrand Néron , Eduardo P C Rocha Fernando de la Cruz. Horizontal Gene Transfer : Methods and Protocols, Springer Science; Business Media, pp.265-283, 2019, 978-1-4939-9876-0. ⟨10.1007/978-1-4939-9877-7_19⟩ Chapitre d'ouvrage pasteur-02867882v1