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Prevalence and risk factors for lung involvement on low-dose chest CT (LDCT) in a paucisymptomatic population of 247 patients affected by COVID-19

Maxime Castelli , Arnaud Maurin , Axel Bartoli , Michael Dassa , Baptiste Marchi , et al.
Insights into Imaging, 2020, 11 (1), ⟨10.1186/s13244-020-00939-7⟩
Article dans une revue hal-03149249v1
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Analyse vidéo des comportements à risque des soignants au cours d'une épidémie à Clostridium difficile

Olga Florea , Sophia Boudjema , Isabelle Legras , Elisabeth Costa , Philippe Brouqui , et al.
Journée nationale de formation des infirmier(ère)s en infectiologie, Jun 2013, Clermont Ferrand, France
Communication dans un congrès hal-02938014v1

Ultrarapid diagnosis, microscope imaging, genome sequencing, and culture isolation of SARS-CoV-2.

Philippe Colson , Jean-Christophe J.-C. Lagier , Jean-Pierre Baudoin , Jacques Bou Khalil , Bernard La Scola , et al.
European Journal of Clinical Microbiology and Infectious Diseases, 2020, ⟨10.1007/s10096-020-03869-w⟩
Article dans une revue hal-02543971v1

The impact of the daily use of soap in rural areas in Senegal on respiratory infectious diseases, fevers and skin microbiota

Codou Ndiaye , Hubert Bassene , Georges Diatta , Nafissatou Diagne , Philippe Parola , et al.
International Journal of Infectious Diseases, 2020, ⟨10.1016/j.ijid.2020.04.076⟩
Article dans une revue hal-02569510v1

Metagenomics, culturomics, and the human gut microbiota

Sophie Amrane , Didier Raoult , Jean-Christophe J.-C. Lagier
Expert Review of Anti-infective Therapy, 2018, 16 (5), pp.373-375. ⟨10.1080/14787210.2018.1467268⟩
Article dans une revue hal-01858936v1

Human Bacterial Repertoire of the Urinary Tract: a Potential Paradigm Shift

Aurelie Morand , Florent Cornu , Jean-Charles Dufour , Michel Tsimaratos , Jean-Christophe J.-C. Lagier , et al.
Journal of Clinical Microbiology, 2019, 57 (3), pp.e00675-18. ⟨10.1128/JCM.00675-18⟩
Article dans une revue hal-02442915v1
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Clinical and microbiological effect of a combination of hydroxychloroquine and azithromycin in 80 COVID-19 patients with at least a six-day follow up: A pilot observational study

Philippe Gautret , Jean-Christophe J.-C. Lagier , Philippe Parola , van Thuan Hoang , Line Meddeb , et al.
Travel Medicine and Infectious Disease, 2020, pp.101663. ⟨10.1016/j.tmaid.2020.101663⟩
Article dans une revue hal-02547911v1
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Autochthonous human and animal leptospirosis, Marseille, France

Pablo Sanchez Fernandez , Angeli Kodjo , Hacene Medkour , Younes Laidoudi , Gregory Dubourg , et al.
Article dans une revue hal-03150175v1
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Japanese encephalitis in a French traveler to Nepal

Stanislas Lagarde , Jean-Christophe J.-C. Lagier , Remi N Charrel , Gilles Querat , Jessica Vanhomwegen , et al.
Journal of NeuroVirology, 2014, 20 (1), pp.99 - 102. ⟨10.1007/s13365-013-0226-2⟩
Article dans une revue hal-01851696v1

“Duodenibacillus massiliensis” gen. nov., sp. nov., a new species identified in the human duodenum

Morgane Mailhe , Davide Ricaboni , Alban Benezech , Jean-Christophe J.-C. Lagier , Pierre-Edouard Fournier , et al.
New Microbes and New Infections, 2016
Article dans une revue hal-01475906v1

Risungbinella massiliensis sp nov., a new member of Thermoactinomycetaceae isolated from human gut

Gregory Dubourg , Jean-Christophe J.-C. Lagier , Catherine Robert , Nicholas Armstrong , Carine Couderc , et al.
Antonie van Leeuwenhoek, 2016, 109 (6), pp.773-784. ⟨10.1007/s10482-016-0677-6⟩
Article dans une revue hal-01458403v1

Non contiguous-finished genome sequence and description of Bacillus jeddahensis sp. nov.

Fadi Bittar , Fehmida Bibi , Dhamodharan Ramasamy , Jean-Christophe J.-C. Lagier , Esam I. Azhar , et al.
Standards in Genomic Sciences, 2015, 10 (1), ⟨10.1186/s40793-015-0024-y⟩
Article dans une revue hal-01478581v1

Failure of metagenomics in detecting emerging pathogens, the Clostridium difficile paradigm

Sophie Amrane , Jean-Christophe J.-C. Lagier , Didier Raoult
Journal of Infection, 2019, 78 (5), pp.409-421. ⟨10.1016/j.jinf.2019.02.014⟩
Article dans une revue hal-02262516v1

Complications of peripheral venous catheters (PVCs): the need to propose alternative route of administration

Morgane Mailhe , Camille Aubry , Philippe Brouqui , Pierre Michelet , Didier Raoult , et al.
International Journal of Antimicrobial Agents, 2020, pp.105875. ⟨10.1016/j.ijantimicag.2020.105875⟩
Article dans une revue hal-02445595v1
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Extensive culturomics of 8 healthy samples enhances metagenomics efficiency

Ami Diakite , Gregory Dubourg , Niokhor Dione , Pamela Afouda , Sara Bellali , et al.
PLoS ONE, 2019, 14 (10), pp.e0223543. ⟨10.1371/journal.pone.0223543⟩
Article dans une revue hal-02467010v1

Bouillabaisse or Fish Soup: The Limitations of Meta-analysis Confronted to the Inconsistency of Fecal Microbiota Transplantation Studies

Jean-Christophe J.-C. Lagier , Matthieu Million , Didier Raoult
Clinical Infectious Diseases, 2019, ⟨10.1093/cid/ciz707⟩
Article dans une revue hal-02507368v1

Outbreak of pneumococcal pneumonia among shipyard workers in Marseille, France, January to February 2020

Nadim Cassir , Laurence Pascal , David Ferrieux , Christiane Bruel , Christophe Guervilly , et al.
Eurosurveillance, 2020, 25 (11), pp.2000162. ⟨10.2807/1560-7917.ES.2020.25.11.2000162⟩
Article dans une revue hal-02525021v1

Vaginal self-sampling as a diagnosis tool in low-income countries and potential applications for exploring the infectious causes of miscarriage

Jean-Christophe J.-C. Lagier , Nafissatou Diagne , Florence Fenollar , Catherine Tamalet , Cheikh Sokhna , et al.
Future Microbiology, 2017, 12 (7), pp.609-620. ⟨10.2217/fmb-2016-0179⟩
Article dans une revue hal-01573732v1

Infections in symptomatic travelers returning from the Arabian peninsula ă to France: A retrospective cross-sectional

Karolina Griffiths , Rémi Charrel , Jean-Christophe J.-C. Lagier , Antoine Ă Nougairede , Fabrice Simon , et al.
Travel Medicine and Infectious Disease, 2016, 14 (4), pp.414-416. ⟨10.1016/j.tmaid.2016.05.002⟩
Article dans une revue hal-01466891v1

Proof of Concept of Culturomics Use of Time of Care

Sabrina Naud , Saber Khelaifia , Maxime Descartes Mbogning Fonkou , Niokhor Dione , Jean-Christophe J.-C. Lagier , et al.
Frontiers in Cellular and Infection Microbiology, 2020, 10, ⟨10.3389/fcimb.2020.524769⟩
Article dans une revue hal-03149246v1

Limbic encephalitis as a relapse of Whipple’s disease with digestive involvement and spondylodiscitis

Didier Bronnimann , Marc-Olivier Vareil , Igor Sibon , Jean-Christophe J.-C. Lagier , Hubert Lepidi , et al.
Infection, 2019, 47 (4), pp.637-641. ⟨10.1007/s15010-018-1173-x⟩
Article dans une revue hal-02466171v1

Description and genomic characterization of Massiliimalia massiliensis gen. nov., sp. nov., and Massiliimalia timonensis gen. nov., sp. nov., two new members of the family Ruminococcaceae isolated from the human gut

Pamela Afouda , Sory Ibrahima Traore , Niokhor Dione , Claudia Andrieu , Enora Tomei , et al.
Antonie van Leeuwenhoek, 2019, 112 (6), pp.905-918. ⟨10.1007/s10482-018-01223-x⟩
Article dans une revue hal-02202099v1
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Prosthetic joint infection caused by Granulicatella adiacens: a case series and review of literature

Fanny Quenard , Piseth Seng , Jean-Christophe J.-C. Lagier , Florence Fenollar , Andreas Stein
BMC Musculoskeletal Disorders, 2017, 18 (1), ⟨10.1186/s12891-017-1630-1⟩
Article dans une revue hal-01573761v1

Halophilic & halotolerant prokaryotes in humans

El Hadji Seck , Jean-Charles Dufour , Didier Raoult , Jean-Christophe J.-C. Lagier
Future Microbiology, 2018, 13 (7), pp.799-812. ⟨10.2217/fmb-2017-0237⟩
Article dans une revue hal-01858904v1
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Genome sequence and description of Haloferax massiliense sp nov., a new halophilic archaeon isolated from the human gut

Saber Khelaifia , Aurelia Caputo , Claudia Andrieu , Frederique Cadoret , Nicholas Armstrong , et al.
Extremophiles, 2018, 22 (3), pp.485-498. ⟨10.1007/s00792-018-1011-1⟩
Article dans une revue hal-01780673v1
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Phenotypic Characteristics and Development of a Hospitalization Prediction Risk Score for Outpatients with Diabetes and COVID-19: The DIABCOVID Study

Adele Lasbleiz , Bertrand Cariou , Patrice Darmon , Astrid Soghomonian , Patricia Ancel , et al.
Journal of Clinical Medicine, 2020, 9 (11), ⟨10.3390/jcm9113726⟩
Article dans une revue hal-03149266v1
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Acute infections caused by Tropheryma whipplei

Jean-Christophe J.-C. Lagier , Florence Fenollar , Didier Raoult
Future Microbiology, 2017, 12 (3), pp.247-254. ⟨10.2217/fmb-2017-0178⟩
Article dans une revue hal-01521226v1
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Detection of Borrelia crocidurae in a vaginal swab after miscarriage, rural Senegal, Western Africa

Ndeye Safietou Fall , Nafissatou Diagne , Oleg Mediannikov , Florence Fenollar , Philippe Parola , et al.
International Journal of Infectious Diseases, 2020, 91, pp.261-263. ⟨10.1016/j.ijid.2019.12.020⟩
Article dans une revue hal-02446310v1

Microbial Culturomics Application for Global Health: Noncontiguous Finished Genome Sequence and Description of Pseudomonas massiliensis Strain CB-1(T) sp nov in Brazil

Lucie Bardet , Teresa Cimmino , Clemence Buffet , Caroline Michelle , Jaishriram Rathored , et al.
OMICS, 2018, 22 (2), pp.164-175. ⟨10.1089/omi.2017.0027⟩
Article dans une revue hal-01791631v1
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Genome sequence and description of Clostridium niameyense sp. nov., isolated from a human with marasmus in Nigeria

S. Chabou , M. Tidjani Alou , S. Khelaifia , Jean-Christophe J.-C. Lagier , N. Labas , et al.
New Microbes and New Infections, 2018, 24, pp.26-31. ⟨10.1016/j.nmni.2018.03.001⟩
Article dans une revue hal-02101219v1