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Structure of Virioplankton in the Charente Estuary (Frane) : Transmission Electron Microscopy versus Pulsed Field Gel Electrophoresis

 J.C. Auguet , H. Montanié , P. Lebaron
Microbial ecology, 2006, 51 (2), pp.197-208
Article dans une revue hal-00089876v1

Fishing for the Microbiome of Tropical Tuna

 Elsa Gadoin , Christelle Desnues , Emmanuelle Roque d’Orbcastel , Thierry Bouvier , Jean-Christophe Auguet , et al.
Microbial ecology, 2022, ⟨10.1007/s00248-022-02096-4⟩
Article dans une revue hal-03823035v1

Identifying macroplastic pathobiomes and antibiotic resistance in a subtropical fish farm

 Jeanne Naudet , Emmanuelle Roque d'Orbcastel , Thierry Bouvier , Sylvain Godreuil , Sabrina Dyall , et al.
Marine Pollution Bulletin, 2023, 194 (Part B.), 115267 (11p.). ⟨10.1016/j.marpolbul.2023.115267⟩
Article dans une revue hal-04204133v1
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A community perspective on the concept of marine holobionts: current status, challenges, and future directions

 Simon M. Dittami , Enrique Arboleda , J.-C. Auguet , Arite Bigalke , Enora Briand , et al.
PeerJ, 2021, 9, pp.e10911. ⟨10.7717/peerj.10911⟩
Article dans une revue hal-03166872v2
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Response of Core Microbial Consortia to Chronic Hydrocarbon Contaminations in Coastal Sediment Habitats

 Mathilde Jeanbille , Jérôme Gury , Robert Duran , Jacek Tronczynski , Hélène Agogué , et al.
Frontiers in Microbiology, 2016, 7, pp.1637. ⟨10.3389/fmicb.2016.01637⟩
Article dans une revue hal-01417951v1
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Diversity and Biogeography of Coral Mucus-Associated Bacterial Communities: The Case of Acropora formosa

 van Ngoc Bui , Duong Huy Nguyen , Nhat Huy Chu , Yvan Bettarel , Jean-Christophe Auguet , et al.
Journal of Marine Science and Engineering, 2023, 11 (1), pp.74. ⟨10.3390/jmse11010074⟩
Article dans une revue hal-04032712v1
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Does the Composition of the Gut Bacteriome Change during the Growth of Tuna?

 Elsa Gadoin , Lucile Durand , Aurélie Guillou , Sandrine Crochemore , Thierry Bouvier , et al.
Microorganisms, 2021, 9 (6), pp.1157. ⟨10.3390/microorganisms9061157⟩
Article dans une revue hal-03332247v1
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Metagenomic data of bacterial communities associated with Acropora species from Phu Quoc Islands, Vietnam

 Duong Huy Nguyen , Nhat Huy Chu , Yvan Bettarel , Jean-Christophe Auguet , Thierry Bouvier , et al.
Data in Brief, 2023, 47, pp.108977. ⟨10.1016/j.dib.2023.108977⟩
Article dans une revue hal-04301281v1
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Genomic ecology of Marine Group II, the most common marine planktonic Archaea across the surface ocean

 Olivier Pereira , Corentin Hochart , J.-C. Auguet , Didier Debroas , Pierre Galand
MicrobiologyOpen, 2019, 8 (9), pp.e00852. ⟨10.1002/mbo3.852⟩
Article dans une revue hal-02283229v1
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Metals and metalloids in high-altitude Pyrenean lakes: sources and distribution in pre-industrial and modern sediments

 Azibar Rodriguez-Iruretagoiena , Ainara Gredilla , Silvia Fdez-Ortiz De Vallejuelo , Gorka Arana , Maite Meaurio , et al.
Environmental Science and Pollution Research, 2023, 30 (37), pp.87561--87574. ⟨10.1007/s11356-023-28347-6⟩
Article dans une revue hal-04262705v1
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Shift and homogenization of gut microbiome during invasion in marine fishes

 Arthur Escalas , Jean-Christophe Auguet , Amandine Avouac , Jonathan Belmaker , Thanos Dailianis , et al.
Animal Microbiome, 2022, 4 (1), pp.37. ⟨10.1186/s42523-022-00181-0⟩
Article dans une revue hal-03691656v1

Seasonality of archaeal proteorhodopsin and associated Marine Group IIb ecotypes (Ca. Poseidoniales) in the North Western Mediterranean Sea

 Olivier Pereira , Corentin Hochart , Dominique Boeuf , Jean-Christophe Auguet , Didier Debroas , et al.
The International Society of Microbiologial Ecology Journal, 2021, 15 (5), pp.1302--1316. ⟨10.1038/s41396-020-00851-4⟩
Article dans une revue hal-03415635v1
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Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts

 Marie-Charlotte Cheutin , Sébastien Villéger , Christina C Hicks , James P W Robinson , Nicholas a J Graham , et al.
Microorganisms, 2021, ⟨10.3390/microorganisms9081711⟩
Article dans une revue hal-03357775v1

Insights in the ecology and evolutionary history of the Miscellaneous Crenarchaeotic Group lineage

 Mireia Fillol , J.-C. Auguet , Emilio Casamayor , Carles M Borrego
The International Society of Microbiologial Ecology Journal, 2016, 10 (3), pp.665 - 677. ⟨10.1038/ismej.2015.143⟩
Article dans une revue hal-01922815v1
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The Unseen Microbes in the Gut, Liver and Skin of Tunas

 Elsa Gadoin , Christelle Desnues , Emmanuelle Roque d'Orbcastel , Thierry Bouvier , Jean-Christophe Auguet , et al.
Frontiers for Young Minds, 2023, 11, pp.818373. ⟨10.3389/frym.2023.818373⟩
Article dans une revue hal-04203967v1
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Microbial Shift in the Enteric Bacteriome of Coral Reef Fish Following Climate-Driven Regime Shifts

 Marie-Charlotte Cheutin , Sébastien Villéger , Christina C Hicks , James P W Robinson , Nicholas a J Graham , et al.
Microorganisms, 2021, 9, ⟨10.3390/microorganisms9081711⟩
Article dans une revue hal-03415928v1
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Exceptional but vulnerable microbial diversity in coral reef animal surface microbiomes

 Marlène Chiarello , J.-C. Auguet , Nicholas Graham , Thomas Claverie , Elliott Sucré , et al.
Proceedings of the Royal Society B: Biological Sciences, 2020, 287 (1927), pp.20200642. ⟨10.1098/rspb.2020.0642⟩
Article dans une revue hal-03093105v1

Corallivory and the microbial debacle in two branching scleractinians

 Yvan Bettarel , Sebastien Halary , J.-C. Auguet , Thanh Chi Mai , Ngoc Van Bui , et al.
The International Society of Microbiologial Ecology Journal, 2018, 12 (4), pp.1109--1126. ⟨10.1038/s41396-017-0033-5⟩
Article dans une revue hal-01826712v1

Geological gas‐storage shapes deep life

 Magali Ranchou‐peyruse , J.-C. Auguet , Camille Mazière , Claudia Ximena Restrepo‐ortiz , Marion Guignard , et al.
Environmental Microbiology, 2019, 21 (10), pp.3953-3964. |. ⟨10.1111/1462-2920.14745⟩
Article dans une revue hal-02282469v1
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Captive bottlenose dolphins and killer whales harbor a species-specific skin microbiota that varies among individuals

 Marlène Chiarello , Sébastien Villéger , Corinne Bouvier , J.-C. Auguet , Thierry Bouvier
Scientific Reports, 2017, 7 (1), ⟨10.1038/s41598-017-15220-z⟩
Article dans une revue hal-01929494v1
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Fishing for the Virome of Tropical Tuna

 Elsa Gadoin , Christelle Desnues , Sonia Monteil-Bouchard , Thierry Bouvier , J.-C. Auguet , et al.
Viruses, 2021, 13 (7), pp.1291. ⟨10.3390/v13071291⟩
Article dans une revue hal-03332237v1

A strong link between marine microbial community composition and function challenges the idea of functional redundancy

 Pierre E. Galand , Olivier Pereira , Corentin Hochart , J.-C. Auguet , Didier Debroas
The International Society of Microbiologial Ecology Journal, 2018, 12 (10), pp.2470-2478. ⟨10.1038/s41396-018-0158-1⟩
Article dans une revue hal-02002181v1

Structure of virioplankton in the Charente Estuary (France): transmission electron microscopy versus pulsed field gel electrophoresis

 J.C. Auguet , H. Montanié , P. Lebaron
Microbial ecology, 2006, 51, pp.197-208
Article dans une revue hal-00130108v1

Metal contaminations impact archaeal community composition, abundance and function in remote alpine lakes

 Sergi Compte-Port , Carles M Borrego , Hélène Moussard , Mathilde Jeanbille , Claudia Ximena Restrepo-Ortiz , et al.
Environmental Microbiology, 2018, 20, pp.2422-2437. ⟨10.1111/1462-2920.14252⟩
Article dans une revue hal-01836458v1

Trace elements in the water column of high-altitude Pyrenean lakes: Impact of local weathering and long-range atmospheric input

 Aridane Gonzalez , Oleg Pokrovsky , Yves Auda , Liudmila Shirokova , Jean-Luc Rols , et al.
Environmental Pollution, 2024, 342, pp.123098. ⟨10.1016/j.envpol.2023.123098⟩
Article dans une revue hal-04345733v1
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Chronic Polyaromatic Hydrocarbon (PAH) Contamination Is a Marginal Driver for Community Diversity and Prokaryotic Predicted Functioning in Coastal Sediments

 Mathilde Jeanbille , Jérôme Gury , Robert Duran , Jacek Tronczynski , Jean-François Ghiglione , et al.
Frontiers in Microbiology, 2016, 7, pp.1303. ⟨10.3389/fmicb.2016.01303⟩
Article dans une revue hal-01599382v2

Analysis of metagenomic data reveals common features of halophilic viral communities across continents

 Simon Roux , Francois Enault , Viviane Ravet , Jonathan Colombet , Yvan Bettarel , et al.
Environmental Microbiology, 2016, 18 (3), pp.889 - 903. ⟨10.1111/1462-2920.13084⟩
Article dans une revue istex pasteur-01375524v1
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Microbial predator-prey interactions could favor coincidental selection of diverse virulence factors in marine coastal waters

 Etienne Robino , Aurore C. Poirier , Carmen Lopez-Joven , J.-C. Auguet , Tristan Rubio , et al.
2018
Pré-publication, Document de travail hal-03134835v1
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Resistance of the oyster pathogen Vibrio tasmaniensis LGP32 against grazing by Vannella sp. marine amoeba involves Vsm and CopA virulence factors

 Etienne Robino , Aurore Poirier , Hajar Amraoui , Sandra Le Bissonnais , Angélique Perret , et al.
Environmental Microbiology, 2019, 22, pp.4183 - 4197. ⟨10.1111/1462-2920.14770⟩
Article dans une revue hal-02388995v1
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Environmental microbiology as a mosaic of explored ecosystems and issues

 Denis Faure , Patricia Bonin , Robert Duran , Pierre Amato , Florence Arsene-Ploetze , et al.
Environmental Science and Pollution Research, 2015, 22 (18), pp.13577-13598. ⟨10.1007/s11356-015-5164-5⟩
Article dans une revue hal-01247096v1
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