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Editorial for "Diversity of the non-coding transcriptomes revealed by RNA-seq technologies

 A. Morillon , J. C. Andrau
Methods, 2013, 63 (1), pp.1--2. ⟨10.1016/j.ymeth.2013.08.030⟩
Article dans une revue hal-02191629v1

H3K4 tri-methylation provides an epigenetic signature of active enhancers: Epigenetic signature of active enhancers

 Aleksandra Pekowska , Touati Benoukraf , Joaquin Zacarias-Cabeza , Mohamed Belhocine , Frederic Koch , et al.
EMBO Journal, 2011, 30 (20), pp.4198--4210. ⟨10.1038/emboj.2011.295⟩
Article dans une revue hal-01614961v1

The Ccr4-NOT deadenylase subunits CNOT7 and CNOT8 have overlapping roles and modulate cell proliferation

 A. Aslam , S. Mittal , F. Koch , J. C. Andrau , G. S. Winkler
Molecular Biology of the Cell, 2009, 20 (17), pp.3840--50. ⟨10.1091/mbc.E09-02-0146⟩
Article dans une revue hal-02194079v1
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GOLT1B Activation in Hepatitis C Virus-Infected Hepatocytes Links ER Trafficking and Viral Replication

 Jacqueline Butterworth , Damien Gregoire , Marion Peter , Armando Andres Roca Suarez , Guillaume Desandré , et al.
Pathogens, 2021, 11, ⟨10.3390/pathogens11010046⟩
Article dans une revue hal-03541060v1

Tyrosine-1 of RNA Polymerase II CTD Controls Global Termination of Gene Transcription in Mammals.

 Nilay Shah , Muhammad Ahmad Maqbool , Yousra Yahia , Amal Zine El Aabidine , Cyril Esnault , et al.
Molecular Cell, 2018, 69 (1), pp.48-61.e6. ⟨10.1016/j.molcel.2017.12.009⟩
Article dans une revue hal-03022268v1

Pasha: a versatile R package for piling chromatin HTS data

 Romain Fenouil , Nicolas Descostes , Lionel Spinelli , Frederic Koch , Muhammad Ahmad Maqbool , et al.
Bioinformatics, 2016, 32 (16), pp.2528 - 2530. ⟨10.1093/bioinformatics/btw206⟩
Article dans une revue hal-01407393v1
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Fra-1 regulates its target genes via binding to remote enhancers without exerting major control on chromatin architecture in triple negative breast cancers

 Fabienne Bejjani , Claire Tolza , Mathias Boulanger , Damien Downes , Raphaël Romero , et al.
Nucleic Acids Research, 2021, 49 (5), pp.2488-2508. ⟨10.1093/nar/gkab053⟩
Article dans une revue hal-03253453v1
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The Landscape of L1 Retrotransposons in the Human Genome Is Shaped by Pre-insertion Sequence Biases and Post-insertion Selection

 Tania Sultana , Dominic van Essen , Oliver Siol , Marc Bailly-Bechet , Claude Philippe , et al.
Molecular Cell, 2019, 74 (3), pp.555-570.e7. ⟨10.1016/j.molcel.2019.02.036⟩
Article dans une revue hal-02401618v1
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Immunopathological manifestations in Kabuki syndrome: a registry study of 177 individuals

 Henri Margot , Guilaine Boursier , Claire Duflos , Elodie Sanchez , Jeanne Amiel , et al.
Genetics in Medicine, 2020, 22 (1), pp.181-188. ⟨10.1038/s41436-019-0623-x⟩
Article dans une revue hal-02268419v1

CoCAS: a ChIP-on-chip analysis suite.

 Touati Benoukraf , Pierre Cauchy , Romain Fenouil , Adrien Jeanniard , Frederic Koch , et al.
Bioinformatics, 2009, 25 (7), pp.954-5. ⟨10.1093/bioinformatics/btp075⟩
Article dans une revue hal-00408403v1
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Divergent transcription is associated with promoters of transcriptional regulators

 C. Lepoivre , M. Belhocine , A. Bergon , A. Griffon , M. Yammine , et al.
BMC Genomics, 2013, 14, pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue hal-02192888v1

Lineage-specific enhancers activate self-renewal genes in macrophages and embryonic stem cells

 Erinn L. Soucie , Ziming Weng , Laufey Geirsdottir , Kaaweh Molawi , Julien Maurizio , et al.
Science, 2016, 351 (6274), pp.680-U123. ⟨10.1126/science.aad5510⟩
Article dans une revue hal-01438535v1
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Argonaute proteins couple chromatin silencing to alternative splicing

 Maya Ameyar-Zazoua , Christophe Rachez , Mouloud Souidi , Philippe Robin , Lauriane Fritsch , et al.
Nature Structural and Molecular Biology, 2012, 19 (10), pp.998 - 1004. ⟨10.1038/nsmb.2373⟩
Article dans une revue istex pasteur-01393429v1
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The control of transcriptional memory by stable mitotic bookmarking

 Maëlle Bellec , Jérémy Dufourt , George Hunt , Hélène Lenden-Hasse , Antonio Trullo , et al.
Nature Communications, 2022, 13 (1), pp.1176. ⟨10.1038/s41467-022-28855-y⟩
Article dans une revue hal-03858303v1
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RNA polymerase II CTD is dispensable for transcription and required for termination in human cells

 Yousra Yahia , Alexia Pigeot , Amal Zine El Aabidine , Nilay Shah , Nezih Karasu , et al.
EMBO Reports, 2023, 24 (9), pp.e56150. ⟨10.15252/embr.202256150⟩
Article dans une revue hal-04285692v1

The control of transcriptional memory by stable mitotic bookmarking

 Mounia Lagha , Maëlle Bellec , Jérémy Dufourt , George Hunt , Hélène Lenden-Hasse , et al.
2021
Pré-publication, Document de travail hal-03442288v1

Threonine-4 of mammalian RNA polymerase II CTD is targeted by Polo-like kinase 3 and required for transcriptional elongation

 C. Hintermair , M. Heidemann , F. Koch , N. Descostes , M. Gut , et al.
EMBO Journal, 2012, 31 (12), pp.2784--97. ⟨10.1038/emboj.2012.123⟩
Article dans une revue hal-02193058v1

Genome-wide RNA polymerase II: not genes only!

 Frederic Koch , Frederic Jourquin , Pierre Ferrier , Jean-Christophe Andrau
Trends in Biochemical Sciences, 2008, 33 (6), pp.265-273. ⟨10.1016/j.tibs.2008.04.006⟩
Article dans une revue istex hal-00294059v1

A threshold level of NFATc1 activity facilitates thymocyte differentiation and opposes notch-driven leukaemia development

 I. Screpanti , E. Serfling , A. K. Patra , S. Klein-Hessling , R. Rudolf , et al.
Nature Communications, 2016, 7, pp.11841. ⟨10.1038/ncomms11841⟩
Article dans une revue hal-02187331v1
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Critical role for TRIM28 and HP1β/γ in the epigenetic control of T cell metabolic reprograming and effector differentiation

 Ulf Gehrmann , Marianne Burbage , Elina Zueva , Christel Goudot , Cyril Esnault , et al.
Proceedings of the National Academy of Sciences of the United States of America, 2019, 116 (51), pp.25839-25849. ⟨10.1073/pnas.1901639116⟩
Article dans une revue hal-02369616v1

Analyses of Promoter, Enhancer, and Nucleosome Organization in Mammalian Cells by MNase-Seq

 Cyril Esnault , Talha Magat , Encar García-Oliver , Jean Christophe Andrau
Enhancers and Promoters, 2351, Springer US, pp.93-104, 2021, Methods in Molecular Biology, ⟨10.1007/978-1-0716-1597-3_5⟩
Chapitre d'ouvrage hal-03357156v1
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Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting

 Katiana Tantale , Encarnation Garcia-Oliver , Adèle L'Hostis , Yueyuxio Yang , Marie- Cécile Robert , et al.
2020
Pré-publication, Document de travail hal-03019157v1

CpG islands and GC content dictate nucleosome depletion in a transcription-independent manner at mammalian promoters

 R. Fenouil , P. Cauchy , F. Koch , N. Descostes , J. Z. Cabeza , et al.
Genome Research, 2012, 22 (12), pp.2399--2408. ⟨10.1101/gr.138776.112⟩
Article dans une revue hal-01614960v1

Editorial for “Diversity of the non-coding transcriptomes revealed by RNA-seq technologies”

 Antonin Morillon , Jean-Christophe Andrau
Methods, 2013, 63 (1), pp.1-2. ⟨10.1016/j.ymeth.2013.08.030⟩
Article dans une revue istex hal-02349843v1
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Divergent transcription is associated with promoters of transcriptional regulators.

 Cyrille Lepoivre , Mohamed Belhocine , Aurélie Bergon , Aurélien Griffon , Miriam Yammine , et al.
BMC Genomics, 2013, 14 (1), pp.914. ⟨10.1186/1471-2164-14-914⟩
Article dans une revue inserm-00924629v1
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Integration of high-throughput reporter assays identify a critical enhancer of the Ikzf1 gene

 Jaafar Alomairi , Anne Molitor , Nori Sadouni , Saadat Hussain , Magali Torres , et al.
PLoS ONE, 2020, 15 (5), pp.e0233191. ⟨10.1371/journal.pone.0233191⟩
Article dans une revue hal-02773600v1
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Stochastic pausing at latent HIV-1 promoters generates transcriptional bursting

 Katjana Tantale , Encar Garcia-Oliver , Marie-Cécile Robert , Adèle L’hostis , Yueyuxiao Yang , et al.
Nature Communications, 2021, 12 (1), pp.4503. ⟨10.1038/s41467-021-24462-5⟩
Article dans une revue hal-03382893v1
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Site- and allele-specific polycomb dysregulation in T-cell leukaemia

 Jean-Marc Navarro , Aurore Touzart , Lydie Pradel , Marie Loosveld , Myriam Koubi , et al.
Nature Communications, 2015, 6 (1), pp.6094. ⟨10.1038/ncomms7094⟩
Article dans une revue hal-01612097v1

Architecture and expression of the nfatc1 gene in lymphocytes

 R. Rudolf , R. Busch , A. K. Patra , K. Muhammad , A. Avots , et al.
Frontiers in Immunology, 2014, 5, pp.21. ⟨10.3389/fimmu.2014.00021⟩
Article dans une revue hal-02191590v1

Initiating RNA polymerase II and TIPs as hallmarks of enhancer activity and tissue-specificity

 F. Koch , J. C. Andrau
Transcription, 2011, 2 (6), pp.263--8. ⟨10.4161/trns.2.6.18747⟩
Article dans une revue hal-02193318v1
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