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48

Jean-Baptiste Durand - Statistics and stochastic modelling


Webpage: http://mistis.inrialpes.fr/people/jbdurand/

Short biography / Research topics

Jean-Baptiste Durand received the engineering degree in applied mathematics and computer science from the "Institut National Polytechnique de Grenoble" Grenoble INP (Grenoble Institute of Technology) in 1999. He received the Ph.D. degree in applied mathematics in 2003 from the University of Grenoble I (France).

From 1999 to 2003, he worked on statistical modelling at the French National Institute for Research in Computer Science and Control (Inria), as a member of the IS2 project (Statistical Inference for Health and Industry). Then, he was a Postdoctoral Research Fellow at AMAP "Plant Modelling" mixed research unit, Montpellier (France), with a grant from CIRAD.

Currently, he is a teaching assistant at Grenoble INP, member of the Mistis team of Laboratoire Jean Kuntzmann. He is the head of the statistics and data science tracks of the international Master's programme MSIAM (Looking for a high-level postgraduate programme in Data Science or Statistics? Have a look and apply at http://msiam.imag.fr/).

He teaches at the "École Nationale Supérieure d'Informatique et de Mathématiques Appliquées de Grenoble" Ensimag (engineering school of applied mathematics and computer science). Topics: fundamentals of statistics, computational statistics.

He was delegated to Inria team Virtual Plants (Inria Sophia) between September 2009 and August 2011. His research interests include computational methods for hidden Markov models, statistical analysis of tree-structured processes, discrete multivariate distributions and applications to signal processing and botany.

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Related working groups, research teams and pages

 

  • Research team: Virtual Plants (Inria Sophia).
    The Virtual Plants team is a joint team between Inria, CIRAD and INRA. It is located in Montpellier. The long-term focus of the project is to study plant development and its control by genetic processes.
    Plants are branching living organisms that develop throughout their lifetimes. Organs are created by small embryogenetic regions at the tip of each axis, called apical meristems.
    In the project Virtual Plants, we are interested in studying plant apical meristem functioning and development. We believe that a detailed analysis of apical meristem processes, based on advanced mathematical and computational methods and tools, will lead us to get a deeper and better understanding of plant development.

 


Article dans une revue9 documents

  • Jean-Baptiste Durand, Alix Allard, Baptiste Guitton, Eric Van de Weg, Marco Bink, et al.. Predicting Flowering Behavior and Exploring Its Genetic Determinism in an Apple Multi-family Population Based on Statistical Indices and Simplified Phenotyping. Frontiers in Plant Science, Frontiers, 2017, 8, pp.858--872. 〈10.3389/fpls.2017.00858〉. 〈hal-01564977〉
  • Massih-Reza Amini, Jean-Baptiste Durand, Olivier Gaudoin, Eric Gaussier, Anatoli Iouditski. Data Science : une formation internationale de niveau Master en science des données. Statistique et Enseignement (ISSN 2108-6745), Société Française de Statistique, 2016, 7 (1), pp.95-102. 〈hal-01342469〉
  • Weiwei Yang, Benoit Pallas, Jean-Baptiste Durand, Sébastien Martinez, Mingyu Han, et al.. The impact of long-term water stress on tree architecture and production is related to changes in transitions between vegetative and reproductive growth in the ‘Granny Smith’ apple cultivar. Tree Physiology, Oxford University Press (OUP): Policy B - Oxford Open Option B, 2016, 36 (11), pp.1369-1381. 〈10.1093/treephys/tpw068〉. 〈hal-01377095〉
  • Jean-Baptiste Durand, Yann Guédon. Localizing the latent structure canonical uncertainty: entropy profiles for hidden Markov models. Statistics and Computing, Springer Verlag (Germany), 2016, 26 (1), pp.549-567. 〈10.1007/s11222-014-9494-9〉. 〈hal-01090836〉
  • Jean-Baptiste Durand, Baptiste Guitton, Jean Peyhardi, Yan Holtz, Yann Guédon, et al.. New insights for estimating the genetic value of F1 apple progenies for irregular bearing during the first years of tree production. Journal of Experimental Botany, Oxford University Press (OUP), 2013, 64 (16), pp.5099-5113. 〈10.1093/jxb/ert297〉. 〈hal-00845353〉
  • Jean-Baptiste Durand, Stephane Girard, Victor Ciriza, Laurent Donini. Optimization of power consumption and user impact based on point process modeling of the request sequence. Journal of the Royal Statistical Society: Series C Applied Statistics, Wiley, 2013, 62 (2), pp.151-165. 〈10.1111/j.1467-9876.2012.01053.x〉. 〈hal-00412509v4〉
  • Clémence Hatt, François Mankessi, Jean-Baptiste Durand, Frédéric Boudon, Fabienne Montes, et al.. Characteristics of Acacia mangium shoot apical meristems in natural and in vitro conditions in relation to heteroblasty. Trees - Structure and Function, Springer Verlag, 2012, 26 (3), pp.1031-1044. 〈http://www.springerlink.com/content/v36n1g4136403843/〉. 〈10.1007/s00468-012-0680-0〉. 〈hal-00699815〉
  • Gilles Celeux, Jean-Baptiste Durand. Selecting Hidden Markov Model State Number with Cross-Validated Likelihood. Computational Statistics, Springer Verlag, 2008, 23 (4), pp.541-564. 〈10.1007/s00180-007-0097-1〉. 〈inria-00193098〉
  • Jean-Baptiste Durand, Paulo Goncalvès, Yann Guédon. Computational methods for hidden Markov tree models - An application to wavelet trees.. IEEE Transactions on Signal Processing, Institute of Electrical and Electronics Engineers, 2004, 52 (9), pp.2551-2560. 〈10.1109/TSP.2004.832006〉. 〈hal-00830078〉

Communication dans un congrès27 documents

  • Jean-Baptiste Durand, Alix Allard, Baptiste Guitton, E Van de Weg, M. C. A. M. Bink, et al.. Genetic determinism of flowering regularity over years in an apple multi-family population. International Symposium on Flowering, Fruit Set and Alternate Bearing, Jun 2017, Palerme, Italy. 2017. 〈hal-01605169〉
  • Jean-Baptiste Durand. Challenges d'analyse de données : une formation par la pratique transversale et multidisciplinaire en science des données. CFIES2017 - Colloque Francophone International sur l’Enseignement de la Statistique , Sep 2017, Grenoble, France. 〈hal-01611032〉
  • Jean-Baptiste Durand, Alix Allard, Baptiste Guitton, Eric Van de Weg, Marco C. A. M. Bink, et al.. Genetic determinism of flowering regularity over years in an apple multi-family population. International Symposium on Flowering, Fruit Set and Alternate Bearing, Jun 2017, Palermo, Italy. 〈http://www.fsab2017.it/〉. 〈hal-01565681〉
  • Benoit Pallas, Weiwei Yang, Jean-Baptiste Durand, Sébastien Martinez, Evelyne Costes. Impact of Long Term Water Deficit on Production and Flowering Occurrence in the 'Granny Smith' Apple Tree Cultivar. XI International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems, Aug 2016, Bologna, Italy. XI International Symposium on Integrating Canopy, Rootstock and Environmental Physiology in Orchard Systems. 〈http://www.orchardsystems2016.org〉. 〈hal-01377104〉
  • Pierre Fernique, Anaëlle Dambreville, Jean-Baptiste Durand, Christophe Pradal, Pierre-Eric Lauri, et al.. Characterization of mango tree patchiness using a tree-segmentation/clustering approach. 2016 IEEE International Conference on Functional-Structural Plant Growth Modeling, Simulation, Visualization and Applications (FSPMA 2016), Nov 2016, Qingdao, China. IEEE, pp.68-74, 〈http://www.fspma2016.net〉. 〈10.1109/FSPMA.2016.7818290〉. 〈hal-01398291〉
  • Jean-Baptiste Durand, Anne Guérin-Dugué, Sophie Achard. Analyse de séquences oculométriques et d'électroencéphalogrammes par modèles markoviens cachés. 48èmes Journées de Statistique, May 2016, Montpellier, France. 〈hal-01339458〉
  • Pierre Fernique, Jean-Baptiste Durand, Yann Guédon. Détection de motifs disruptifs au sein de plantes : une approche de quotientement/classification d'arborescences. 47èmes Journées de Statistique, Jun 2015, Lille, France. 47èmes Journées de Statistique, Lille. 〈http://jds2015.sfds.asso.fr/〉. 〈hal-01240305〉
  • Pierre Fernique, Jean-Baptiste Durand, Yann Guédon. Estimation of Discrete Partially Directed Acyclic Graphical Models in Multitype Branching Processes. COMPSTAT 2014, 21st International Conference on Computational Statistics, Aug 2014, Geneva, Switzerland. 2014, Proceedings of COMPSTAT 2014, 21st International Conference on Computational Statistics. 〈http://compstat2014.org/〉. 〈hal-01084524〉
  • Jean-Baptiste Durand, Yann Guédon. Quantifying and localizing state uncertainty in hidden Markov models using conditional entropy profiles. M. Gilli; G. González-Rodríguez; A. Nieto-Reyes. COMPSTAT 2014 - 21st International Conference on Computational Statistics, Aug 2014, Genève, Switzerland. Université de Genève, pp.213-221, 2014, 〈http://compstat2014.org/〉. 〈hal-01058278〉
  • Pierre Fernique, Jean-Baptiste Durand, Yann Guédon. Modèles graphiques paramétriques pour la modélisation des lois de génération dans des processus de branchement multitypes. 46èmes Journées de Statistique, Jun 2014, Rennes, France. 2014. 〈hal-01058313〉
  • Jean-Baptiste Durand, Yann Guédon. Quantification de l'incertitude sur la structure latente dans des modèles de Markov cachés. 46èmes Journées de Statistique, Jun 2014, Rennes, France. 2014. 〈hal-01058317〉
  • Jean-Baptiste Durand, Pierre Fernique. Approche graphique pour la modélisation statistique de la dépendance entre activités journalières. Workshop "Statistique, Transport et Activités", Nov 2013, Grenoble, France. 〈hal-00919372〉
  • Anaëlle Dambreville, Pierre Fernique, Christophe Pradal, Pierre-Eric Lauri, Frédéric Normand, et al.. Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 371 p., 2013. 〈hal-01269304〉
  • Jean-Baptiste Durand, Baptiste Guitton, Jean Peyhardi, Yan Holtz, Yann Guédon, et al.. Estimating the genetic value of F1 apple progenies for irregular bearing during first years of production. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. FSPM2013 - 7th International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.13-15, 2013, 〈http://www.metla.fi/fspm2013/proceedings.htm〉. 〈hal-00847593〉
  • Jean-Baptiste Durand, Baptiste Guitton, Jean Peyhardi, Yan Holtz, Yann Guedon, et al.. Estimating the genetic value of F1 apple progenies for irregular bearing during first years of production. 7. International Conference on Functional Structure Plant Models, Jun 2013, Saariselkä, Finland. Finnish Society of Forest Science, 2013. 〈hal-01269291〉
  • Anaëlle Dambreville, Pierre Fernique, Christophe Pradal, Pierre-Eric Lauri, Frédéric Normand, et al.. Deciphering mango tree asynchronisms using Markov tree and probabilistic graphical models. Risto Sievänen and Eero Nikinmaa and Christophe Godin and Anna Lintunen and Pekka Nygren. FSPM2013 - 7th International Workshop on Functional-Structural Plant Models, Jun 2013, Saariselkä, Finland. pp.210-212, 2013. 〈hal-00847614〉
  • Pierre Fernique, Jean-Baptiste Durand, Yann Guédon. Parametric Modelling of Multivariate Count Data Using Probabilistic Graphical Models. AIGM13 - 3rd Workshop on Algorithmic issues for Inference in Graphical Models, Sep 2013, Paris, France. 〈hal-00918597〉
  • Chakkrit Preuksakarn, Frédéric Boudon, Pascal Ferraro, Jean-Baptiste Durand, Ekko Nikinmaa, et al.. Reconstructing Plant Architecture from 3D Laser scanner data. 6th International Workshop on Functional-Structural Plant Models, Sep 2010, Davis, United States. pp.12--17, 2010. 〈hal-00490064〉
  • Victor Ciriza, Laurent Donini, Jean-Baptiste Durand, Stephane Girard. A Statistical Model for Optimizing Power Consumption of Printers. 40èmes Journées de Statistique, May 2008, Ottawa, Canada. pp.227, 2008. 〈inria-00320053〉
  • Victor Ciriza, Laurent Donini, Jean-Baptiste Durand, Stephane Girard. A statistical model for optimizing power consumption of printers. XIG R & T Conference, May 2008, Webster, United States. 2008. 〈hal-00847605〉
  • Patrick Heuret, Jean-Baptiste Durand, Éric Nicolini, Sabrina Coste, Yves Caraglio. Exploring morphogenetical gradients plasticity using hidden Markov tree models in young individuals of the tropical specie Symphonia globulifera (Clusiaceae). FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P19:1-1, 2007. 〈hal-00847590〉
  • Jean-Baptiste Durand, Yves Caraglio, Patrick Heuret, Eric Nicolini. Segmentation-based approaches for characterising plant architecture and assessing its plasticity at different scales. FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.39:1-3, 2007. 〈hal-00831827〉
  • Samuel Dufour-Kowalski, Christophe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: An open-source platform for the integration of heterogeneous FSPM components. FSPM07 - 5th International Workshop on Functional-Structural Plant Models, Nov 2007, Napier, New Zealand. pp.P36:1-2, 2007. 〈hal-00831824〉
  • Jean-Baptiste Durand. Calcul de probabilités et estimation dans des modèles de Markov cachés graphiques. 39èmes Journées de Statistique, Jun 2007, Angers, France. 2007. 〈inria-00179396〉
  • Christophe Pradal, Frédéric Boudon, Nicolas Dones, Jean-Baptiste Durand, Pierre Barbier de Reuille, et al.. OpenAlea : a platform for plant modelling, analysis and simulation. Python Conference Europython, 2006, Genève, Switzerland. 16 p., 2006. 〈hal-01189325〉
  • Jean-Baptiste Durand, Yann Guédon, Yves Caraglio, Evelyne Costes. Analysis of the plant architecture via tree-structured statistical models : The hidden Markov trees.. 4th International Workshop on Functional-Structural Plant Models, 2004, Montpellier, France. pp.61-64, 2004. 〈hal-00830077〉
  • Jean-Baptiste Durand, Paulo Gonçalves, Yann Guédon. Arbres de Markov cachés : inférence et applications. Proceedings of XXXVI èmes Journées de Statistique, May 2004, Montpellier, France. 2004. 〈inria-00570624〉

Poster1 document

  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Lossy compression of unordered rooted trees. DCC 2016 - Data Compression Conference , Mar 2016, Snowbird, Utah, United States. 〈10.1109/DCC.2016.73〉. 〈hal-01394707〉

Direction d'ouvrage, Proceedings, Dossier1 document

  • Samuel Dufour-Kowalski, Christophoe Pradal, Nicolas Dones, Pierre Barbier de Reuille, Frédéric Boudon, et al.. OpenAlea: an open-source platform for the integration of heterogeneous FSPM components. 5. International Workshop on Functional-Structural Plant Models, 2007, Napier, New Zealand. pp.36, 2007. 〈hal-01189279〉

Pré-publication, Document de travail4 documents

  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Approximation of trees by self-nested trees. 2016. 〈hal-01294013v2〉
  • Pierre Fernique, Jonathan Legrand, Jean-Baptiste Durand, Yann Guédon. Semi-parametric Markov Tree for cell lineage analysis. 2016. 〈hal-01286298〉
  • Pierre Fernique, Jean Peyhardi, Jean-Baptiste Durand. Multinomial distributions for the parametric modeling of multivariate count data. 2016. 〈hal-01286171〉
  • Romain Azaïs, Jean-Baptiste Durand, Christophe Godin. Lossy compression of unordered rooted trees. 2015. 〈hal-01236088〉

Rapport5 documents

  • Jean-Baptiste Durand, Yann Guédon. Localizing the Latent Structure Canonical Uncertainty: Entropy Profiles for Hidden Markov Models. [Research Report] RR-7896, Inria. 2012, pp.43. 〈hal-00675223〉
  • Gilles Celeux, Jean-Baptiste Durand. Selecting Hidden Markov Chain States Number with Cross-Validated Likelihood. [Research Report] RR-5877, INRIA. 2006. 〈inria-00071392〉
  • Jean-Baptiste Durand, Olivier Gaudoin. Software Reliability Modelling and Prediction with Hidden Markov Chain. [Research Report] RR-4747, INRIA. 2003. 〈inria-00071840〉
  • Jean-Baptiste Durand, Laurent Bozzi, Gilles Celeux, Christian Derquenne. Analyse de courbes de consommation électrique par chaines de Markov cachées. [Rapport de recherche] RR-4858, INRIA. 2003. 〈inria-00071725〉
  • Jean-Baptiste Durand, Paulo Gonçalves. Statistical Inference for Hidden Markov Tree Models and Application to Wavelet Trees. [Research Report] RR-4248, INRIA. 2001. 〈inria-00072339〉

Thèse1 document

  • Jean-Baptiste Durand. Modèles à structure cachée : inférence, estimation, sélection de modèles et applications. Mathématiques [math]. Université Joseph-Fourier - Grenoble I, 2003. Français. 〈tel-00002754v3〉