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biotoolsSchema: a formalized schema for bioinformatics software description
Jon Ison
,
Hans Ienasescu
,
Emil Rydza
,
Piotr Chmura
,
Kristoffer Rapacki
,
et al.
Article dans une revue
hal-03145289v1
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RhizoBindingSites, a Database of DNA-Binding Motifs in Nitrogen-Fixing Bacteria Inferred Using a Footprint Discovery Approach
Hermenegildo Taboada-Castro
,
Jaime Abraham Castro-Mondragón
,
Alejandro Aguilar-Vera
,
Alfredo José Hernández-Álvarez
,
Jacques van Helden
,
et al.
Article dans une revue
hal-03141125v1
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Discrimination of Yeast Genes Involved in Methionine and Phosphate Metabolism on the Basis of Upstream Motifs
Didier Gonze
,
Sylvie Pinloche
,
Olivier Gascuel
,
Jacques van Helden
Article dans une revue
lirmm-00105316v1
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In vitro screening of a FDA approved chemical library reveals potential inhibitors of SARS-CoV-2 replication
Franck Touret
,
Magali Gilles
,
Karine Barral
,
Antoine Nougairède
,
Jacques van Helden
,
et al.
Article dans une revue
inserm-02944556v1
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Transcriptional profiling of midguts prepared from Trypanosoma/T. congolense-positive Glossina palpalis palpalis collected from two distinct Cameroonian foci : coordinated signatures of the midguts’ remodeling as T. congolense-supportive niches
Jean Tsagmo Ngoune
,
Flobert Njiokou
,
Béatrice Loriod
,
Ginette Kame-Ngasse
,
Nicolas Fernandez-Nunez
,
et al.
Article dans une revue
hal-01874935v1
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RSAT variation-tools: An accessible and flexible framework to predict the impact of regulatory variants on transcription factor binding
Walter Santana-Garcia
,
Maria Rocha-Acevedo
,
Lucia Ramirez-Navarro
,
Yvon Mbouamboua
,
Denis Thieffry
,
et al.
Article dans une revue
hal-02458940v1
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The chromatin environment shapes DNA replication origin organization and defines origin classes
Christelle Cayrou
,
Benoit Ballester
,
Isabelle Peiffer
,
Romain Fenouil
,
Philippe Coulombe
,
et al.
Article dans une revue
hal-03101863v1
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Coordinated response of the Desulfovibrio desulfuricans 27774 transcriptome to nitrate, nitrite and nitric oxide
Ian Cadby
,
Matthew Faulkner
,
Jeanne Chèneby
,
Justine Long
,
Jacques van Helden
,
et al.
Article dans une revue
hal-01874934v1
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Tuning promoter boundaries improves regulatory motif discovery in nonmodel plants: the peach example
Najla Ksouri
,
Jaime Castro-Mondragón
,
Francesc Montardit-Tarda
,
Jacques van Helden
,
Bruno Contreras-Moreira
,
et al.
Article dans une revue
hal-03243277v1
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Deciphering the adaptation strategies of Desulfovibrio piezophilus to hydrostatic pressure through metabolic and transcriptional analyses.
Amira Amrani
,
Jacques van Helden
,
Aurélie Bergon
,
Aicha Aouane
,
Wajdi Ben Hania
,
et al.
Article dans une revue
istex
hal-01410149v1
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The bio.tools registry of software tools and data resources for the life sciences
Jon Ison
,
Hans Ienasescu
,
Piotr Chmura
,
Emil Rydza
,
Hervé Ménager
,
et al.
Article dans une revue
hal-02408472v1
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IFB/ELIXIR-FR, the french node of ELIXIR
Anne-Françoise Adam-Blondon
,
Jacques van Helden
,
Gildas Le Corguillé
,
Christophe Blanchet
,
Hélène Chiapello
,
et al.
ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France
Communication dans un congrès
hal-04503051v1
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Integrating Bacterial ChIP-seq and RNA-seq Data With SnakeChunks
Claire Rioualen
,
Lucie Charbonnier-Khamvongsa
,
Julio Collado-Vides
,
Jacques van Helden
Article dans une revue
hal-02078136v1
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Ancestral state reconstruction of metabolic pathways across pangenome ensembles
Fotis Psomopoulos
,
Jacques van Helden
,
Claudine Médigue
,
Anastasia Chasapi
,
Christos Ouzounis
Article dans une revue
hal-03089213v1
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RSAT 2015: Regulatory Sequence Analysis Tools
Alejandra Medina-Rivera
,
Matthieu Defrance
,
Olivier Sand
,
Carl Herrmann
,
Jaime A. Castro-Mondragon
,
et al.
Article dans une revue
hal-01624369v1
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An appeal for an objective, open, and transparent scientific debate about the origin of SARS-CoV-2
Jacques van Helden
,
Colin Butler
,
Guillaume Achaz
,
Bruno Canard
,
Didier Casane
,
et al.
Article dans une revue
hal-03358748v1
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Correction : Clusters of Conserved Beta Cell Marker Genes for Assessment of Beta Cell Phenotype
Geert A. Martens
,
Lei Jiang
,
Karine H. Hellemans
,
Geert Stangã©
,
Harry Heimberg
,
et al.
Article dans une revue
hal-01624370v1
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Molecular evolution of eukaryotic genomes: hemiascomycetous yeast spliceosomal introns.
Elisabeth Bon
,
Serge Casaregola
,
Gaëlle Blandin
,
Bertrand Llorente
,
Cécile Neuvéglise
,
et al.
Article dans une revue
inria-00339881v1
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Sequanix: a dynamic graphical interface for Snakemake workflows
Dimitri Desvillechabrol
,
Rachel Legendre
,
Claire Rioualen
,
Christiane Bouchier
,
Jacques van Helden
,
et al.
Article dans une revue
hal-01874933v1
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COVID-19 epidemiologic surveillance using wastewater
Virender Sharma
,
Chetan Jinadatha
,
Eric Lichtfouse
,
Etienne Decroly
,
Jacques van Helden
,
et al.
Article dans une revue
hal-03125589v1
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Theoretical and empirical quality assessment of transcription factor-binding motifs
Alejandra Medina-Rivera
,
Cei Abreu-Goodger
,
Morgane Thomas-Chollier
,
Heladia Salgado
,
Julio Collado-Vides
,
et al.
Article dans une revue
hal-01624287v1
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Transcriptional and epigenetic signatures of zygotic genome activation during early drosophila embryogenesis.
Elodie Darbo
,
Carl Herrmann
,
Thomas Lecuit
,
Denis Thieffry
,
Jacques van Helden
Article dans une revue
inserm-00842641v1
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Tracing the origins of SARS-COV-2 in coronavirus phylogenies: a review
Erwan Sallard
,
José Halloy
,
Didier Casane
,
Etienne Decroly
,
Jacques van Helden
Article dans une revue
hal-03243289v1
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Sub-microscopic Plasmodium falciparum infections in matched peripheral, placental and umbilical cord blood samples from asymptomatic Congolese women at delivery
Yvon Mbouamboua
,
Koukouikila-Koussounda Félix
,
Ntoumi Francine
,
Selorme Adukpo
,
Michael Kombo
,
et al.
Article dans une revue
hal-02078131v1
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RSAT 2018: regulatory sequence analysis tools 20th anniversary
Nga thi thuy Nguyen
,
Bruno Contreras-Moreira
,
Jaime Castro-Mondragon
,
Walter Santana-Garcia
,
Raul Ossio
,
et al.
Article dans une revue
hal-01874932v1
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RSAT 2022: regulatory sequence analysis tools
Walter Santana-Garcia
,
Jaime Castro-Mondragon
,
Mónica Padilla-Gálvez
,
Nga Nguyen
,
Ana Elizondo-Salas
,
et al.
Article dans une revue
hal-03669930v1
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Tracing the origins of SARS-CoV-2 in coronavirus phylogenies
Erwan Sallard
,
José Halloy
,
Didier Casane
,
Etienne Decroly
,
Jacques van Helden
Article dans une revue
hal-02891455v8
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Redefining fundamental concepts of transcription initiation in bacteria
Citlalli Mejía-Almonte
,
Stephen Busby
,
Joseph Wade
,
Jacques van Helden
,
Adam Arkin
,
et al.
Article dans une revue
hal-03139472v1
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Integrative analysis of public ChIP-seq experiments reveals a complex multi-cell regulatory landscape
Aurélien Griffon
,
Quentin Barbier
,
Jordi Dalino
,
Jacques van Helden
,
Salvatore Spicuglia
,
et al.
Article dans une revue
hal-01219379v1
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Clusters of Conserved Beta Cell Marker Genes for Assessment of Beta Cell Phenotype
Geert A. Martens
,
Lei Jiang
,
Karine H. Hellemans
,
Geert Stange
,
Harry Heimberg
,
et al.
Article dans une revue
hal-01624290v1
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