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IN VIVO LARGE SCALE MAPPING OF PROTEIN TURNOVER IN THE HUMAN CEREBROSPINAL FLUID

Sylvain Lehmann , Christophe Hirtz , Jérôme Vialaret , Maxence Ory , Guillaume Gras Combes , et al.
Analytical Chemistry, 2019, 91 (24), pp.15500-15508. ⟨10.1021/acs.analchem.9b03328⟩
Article dans une revue hal-02368099v1
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Mechanical signatures of human colon cancers

Evelyne Lopez-Crapez , Luca Costa , Guillaume Tosato , Jeanne Ramos , Thibault Mazard , et al.
Scientific Reports, 2022, 12 (1), pp.12475. ⟨10.1038/s41598-022-16669-3⟩
Article dans une revue hal-03811868v1

Building and exploring an integrated human kinase network: global organization and medical entry points

Jacques Colinge , A. Cesar-Razquin , K. Huber , F. P. Breitwieser , P. Majek , et al.
Journal of Proteomics, 2014, 107, pp.113--27. ⟨10.1016/j.jprot.2014.03.028⟩
Article dans une revue hal-02168075v1
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Targeting a cell state common to triple‐negative breast cancers

Markus Muellner , Barbara Mair , Yasir Ibrahim , Claudia Kerzendorfer , Hannelore Lechtermann , et al.
Molecular Systems Biology, 2015, 11 (2), pp.789. ⟨10.15252/msb.20145664⟩
Article dans une revue hal-02276743v1
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An R package for generic modular response analysis and its application to estrogen and retinoic acid receptor crosstalk

Gabriel Jimenez-Dominguez , Patrice Ravel , Stéphan Jalaguier , Vincent Cavaillès , Jacques Colinge
Scientific Reports, 2021, 11 (1), ⟨10.1038/s41598-021-86544-0⟩
Article dans une revue hal-03358612v1
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IFIT1 is an antiviral protein that recognises 5'-triphosphate RNA

Giulio Superti-Furga , Andreas Pichlmair , Caroline Lassnig , Christoph L Baumann , Tilmann Bürckstümmer , et al.
Nature Immunology, 2011, ⟨10.1038/ni.2048⟩
Article dans une revue istex hal-00648046v1
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A time-resolved molecular map of the macrophage response to VSV infection

Richard K Kandasamy , Gregory I Vladimer , Berend Snijder , André C Müller , Manuele Rebsamen , et al.
npj Systems Biology and Applications, 2016, 2 (1), pp.16027. ⟨10.1038/npjsba.2016.27⟩
Article dans une revue hal-04131043v1

Germline RBBP6 mutations in familial myeloproliferative neoplasms

Ashot Harutyunyan , Roberto Giambruno , Christian Krendl , Alexey Stukalov , Thorsten Klampfl , et al.
Blood, 2016, 127 (3), pp.362-365. ⟨10.1182/blood-2015-09-668673⟩
Article dans une revue hal-02296271v1

Transcriptomic and genomic heterogeneity in blastic plasmacytoid dendritic cell neoplasms: from ontogeny to oncogenesis

Florian Renosi , Anne Roggy , Ambre Giguelay , Lou Soret , Pierre-Julien Viailly , et al.
Blood Advances, 2021, 5 (5), pp.1540-1551. ⟨10.1182/bloodadvances.2020003359⟩
Article dans une revue hal-04541123v1

A combinatorial screen of the CLOUD uncovers a synergy targeting the androgen receptor

Marco Licciardello , Anna Ringler , Patrick Markt , Freya Klepsch , Charles-Hugues Lardeau , et al.
Nature Chemical Biology, 2017, 13 (7), pp.771-778. ⟨10.1038/nchembio.2382⟩
Article dans une revue hal-02278677v1
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The Prognostic Impact of the Aryl Hydrocarbon Receptor (AhR) in Primary Breast Cancer Depends on the Lymph Node Status

Udo Jeschke , Xi Zhang , Christina Kuhn , Stéphan Jalaguier , Jacques Colinge , et al.
International Journal of Molecular Sciences, 2019, 20 (5), pp.1016. ⟨10.3390/ijms20051016⟩
Article dans une revue inserm-02414817v2
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Inferring ligand-receptor cellular networks from bulk and spatial transcriptomic datasets with BulkSignalR

Jean-Philippe Villemin , Laia Bassaganyas , Didier Pourquier , Florence Boissière , Simon Cabello-Aguilar , et al.
Nucleic Acids Research, 2023, 51 (10), pp.4726-4744. ⟨10.1093/nar/gkad352⟩
Article dans une revue hal-04129686v1
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Mechanisms underlying the cooperation between loss of epithelial polarity and Notch signaling during neoplastic growth in Drosophila

Rémi Logeay , Charles Géminard , Patrice Lassus , Miriam Rodríguez-Vázquez , Diala Kantar , et al.
Development (Cambridge, England), 2022, 149 (3), pp.dev200110. ⟨10.1242/dev.200110⟩
Article dans une revue hal-03738484v1

Identification of kinase inhibitor targets in the lung cancer microenvironment by chemical and phosphoproteomics

M. Gridling , S. B. Ficarro , F. P. Breitwieser , L. Song , K. Parapatics , et al.
Molecular Cancer Therapeutics, 2014, 13, pp.2751--62. ⟨10.1158/1535-7163.MCT-14-0152⟩
Article dans une revue hal-02168074v1

A Surface Biotinylation Strategy for Reproducible Plasma Membrane Protein Purification and Tracking of Genetic and Drug-Induced Alterations

Katrin Hörmann , Alexey Stukalov , André Müller , Leonhard Heinz , Giulio Superti-Furga , et al.
Journal of Proteome Research, 2016, 15 (2), pp.647-658. ⟨10.1021/acs.jproteome.5b01066⟩
Article dans une revue hal-02296681v1
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The landscape of cancer-associated fibroblasts in colorectal cancer liver metastases

Ambre Giguelay , Evgenia Turtoi , Lakhdar Khelaf , Guillaume Tosato , Ikrame Dadi , et al.
Theranostics, 2022, 12 (17), pp.7624-7639. ⟨10.7150/thno.72853⟩
Article dans une revue hal-04131466v1
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The Lipid-Modifying Enzyme SMPDL3B Negatively Regulates Innate Immunity

Leonhard x. Heinz , Christoph l. Baumann , Marielle s. Köberlin , Berend Snijder , Riem Gawish , et al.
Cell Reports, 2015, 11 (12), pp.1919-1928. ⟨10.1016/j.celrep.2015.05.006⟩
Article dans une revue hal-02285811v1

Stereospecific targeting of MTH1 by (S)-crizotinib as an anticancer strategy

K. V. Huber , E. Salah , B. Radic , M. Gridling , J. M. Elkins , et al.
Nature, 2014, 508, pp.222--7. ⟨10.1038/nature13194⟩
Article dans une revue hal-02168081v1

Virulence factor NSs of rift valley fever virus recruits the F-box protein FBXO3 to degrade subunit p62 of general transcription factor TFIIH

M. Kainulainen , M. Habjan , P. Hubel , L. Busch , S. Lau , et al.
Journal of Virology, 2014, 88, pp.3464--73. ⟨10.1128/JVI.02914-13⟩
Article dans une revue hal-02168082v1
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A Comprehensive Analysis of the Dynamic Response to Aphidicolin-Mediated Replication Stress Uncovers Targets for ATM and ATMIN

Abdelghani Mazouzi , Alexey Stukalov , André Müller , Doris Chen , Marc Wiedner , et al.
Cell Reports, 2016, 15 (4), pp.893-908. ⟨10.1016/j.celrep.2016.03.077⟩
Article dans une revue hal-02297707v1

A chemical biology approach identifies AMPK as a modulator of melanoma oncogene MITF

V. Borgdorff , U. Rix , G. E. Winter , M. Gridling , A. C. Muller , et al.
Oncogene, 2014, 33, pp.2531--9. ⟨10.1038/onc.2013.185⟩
Article dans une revue hal-02168079v1
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Genome-wide diversity and gene expression profiling of Babesia microti isolates identify polymorphic genes that mediate host-pathogen interactions

J. C. Silva , E. Cornillot , C. Mccracken , S. Usmani-Brown , Ankit Dwivedi , et al.
Scientific Reports, 2016, 6, pp.35284. ⟨10.1038/srep35284⟩
Article dans une revue hal-01940958v1
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Biallelic loss-of-function mutation in NIK causes a primary immunodeficiency with multifaceted aberrant lymphoid immunity

K. L. Willmann , S. Klaver , F. Dogu , E. Santos-Valente , W. Garncarz , et al.
Nature Communications, 2014, 5, pp.5360. ⟨10.1038/ncomms6360⟩
Article dans une revue hal-02181338v1
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Data-Based Radiation Oncology: Design of Clinical Trials in the Toxicity Biomarkers Era

David Azria , Ariane Lapierre , Sophie Gourgou , Dirk de Ruysscher , Jacques Colinge , et al.
Frontiers in Oncology, 2017, 7, ⟨10.3389/fonc.2017.00083⟩
Article dans une revue hal-02294898v1

Comprehensive comparative and semiquantitative proteome of a very low number of native and matched epstein-barr-virus-transformed B lymphocytes infiltrating human melanoma

M. Maurer , A. C. Muller , K. Parapatics , W. F. Pickl , C. Wagner , et al.
Journal of Proteome Research, 2014, 13, pp.2830--45. ⟨10.1021/pr401270y⟩
Article dans une revue hal-02168076v1
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Design and selection of optimal ErbB-targeting bispecific antibodies in pancreatic cancer

Emilia Rabia , Véronique Garambois , Christine Dhommée , Christel Larbouret , Laurie Lajoie , et al.
Frontiers in Immunology, 2023, 14, ⟨10.3389/fimmu.2023.1168444⟩
Article dans une revue hal-04102843v2
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Farnesyltransferase inhibition overcomes the adaptive resistance to osimertinib in EGFR-mutant NSCLC

Sarah Figarol , Célia Delahaye , Rémi Gence , Raghda Asslan , Sandra Pagano , et al.
2022
Pré-publication, Document de travail hal-03843955v1
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Application of modular response analysis to medium- to large-size biological systems

Meriem Mekedem , Patrice Ravel , Jacques Colinge
PLoS Computational Biology, 2022, 18 (4), pp.e1009312. ⟨10.1371/journal.pcbi.1009312⟩
Article dans une revue hal-04130157v1
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Detection of soluble biomarkers of pancreatic cancer in endoscopic ultrasoundguided fine-needle aspiration samples

Régis Souche , Guillaume Tosato , Benjamin Rivière , Jean-Christophe Valats , Antoine Debourdeau , et al.
Endoscopy, 2022, 54 (05), pp.503-508. ⟨10.1055/a-1550-2503⟩
Article dans une revue hal-04124132v1

Définition et applications cliniques des radiomics

C. Bourgier , Jacques Colinge , N. Aillères , P. Fenoglietto , M. Brengues , et al.
Cancer/Radiothérapie, 2015, 19 (6-7), pp.532-537. ⟨10.1016/j.canrad.2015.06.008⟩
Article dans une revue hal-02318081v1