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EROS-DOCK: Protein-Protein Docking Using Exhaustive Branch-and-Bound Rotational Search
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
Article dans une revue
hal-02269812v1
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Binding Site Identification and Flexible Docking of Single Stranded RNA to Proteins Using a Fragment-Based Approach
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
,
Martin Zacharias
Article dans une revue
hal-01505852v1
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Modelling ssRNA-protein complexes at atomic resolution
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
,
Martin Zacharias
Journées Ouvertes en Biologie, Informatique & Mathématiques (JOBIM), Jul 2015, Clermont-Ferrand, France
Communication dans un congrès
hal-03763641v1
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Fragment-based modelling of single stranded RNA bound to RNA recognition motif containing proteins
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
,
Martin Zacharias
Article dans une revue
hal-01505862v1
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Raltegravir flexibility and its impact on recognition by the HIV-1 IN targets.
Rohit Arora
,
Isaure Chauvot de Beauchêne
,
Jaroslaw Polansky
,
Elodie Laine
,
Luba Tchertanov
Article dans une revue
istex
hal-01505872v1
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Docking software performance in protein-glycosaminoglycan systems
Urszula Uciechowska-Kaczmarzyk
,
Isaure Chauvot de Beauchêne
,
Sergey Samsonov
Article dans une revue
hal-02391852v1
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New strategy for optimizing knowledge-based docking parameters: application to ssRNA-protein docking
Anna Kravchenko
,
Malika Smaïl-Tabbone
,
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
JOBIM 2021 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2021, Paris, France
Poster de conférence
hal-03370998v1
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Modeling large protein–glycosaminoglycan complexes using a fragment‐based approach
Isaure Chauvot de Beauchêne
2017
Pré-publication, Document de travail
hal-01994476v1
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Conformational variability in proteins bound to single-stranded DNA: a new benchmark for new docking perspectives
Dominique Mias-Lucquin
,
Isaure Chauvot de Beauchêne
Article dans une revue
hal-03821504v1
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Blind prediction of homo‐ and hetero‐ protein complexes: The CASP13‐CAPRI experiment
Marc Lensink
,
Guillaume Brysbaert
,
Nurul Nadzirin
,
Sameer Velankar
,
Raphaël A.G. Chaleil
,
et al.
Proteins - Structure, Function and Bioinformatics, 2019, 87 (12), pp.1200-1221. ⟨10.1002/prot.25838⟩
Article dans une revue
hal-02320974v1
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EROS: A Protein Docking Algorithm Using a Quaternion pi- Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
GGMM (groupe de graphisme et modélisation moléculaire ), Apr 2019, Nice, France
Poster de conférence
hal-02392106v1
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Agglomerative clustering of fragment 3D structures based on pairwise RMSD
Antoine Moniot
,
Isaure Chauvot de Beauchêne
,
Yann Guermeur
ISMB ECCB 2021, Jul 2021, Virtual, France
Poster de conférence
hal-03432682v1
|
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Modeling large protein–glycosaminoglycan complexes using a fragment‐based approach
Sergey Samsonov
,
Martin Zacharias
,
Isaure Chauvot de Beauchêne
Article dans une revue
hal-02088192v1
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Protein-protein and peptide-protein docking and refinement using ATTRACT in CAPRI
Christina Eva Maria Schindler
,
Isaure Chauvot de Beauchêne
,
Sjoerd Jacob de Vries
,
Martin Zacharias
Article dans une revue
hal-01505867v1
|
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Fragment based modeling of protein-GAG complexes
Isaure Chauvot de Beauchêne
,
Sergey A Samsonov
,
Martin Zacharias
GGMM 2017 - 20e congrès du Groupe de Graphisme et Modelisation Moleculaire, May 2017, Reims, France. pp.1
Poster de conférence
hal-01927283v1
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Exploration of DNA processing features unravels novel properties of ICE conjugation in Gram-positive bacteria
Haifa Laroussi
,
Yanis Aoudache
,
Emilie Robert
,
Virginie Libante
,
Louise Thiriet
,
et al.
Article dans une revue
hal-03881644v1
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NAfragDB: A Multi-Purpose Structural Database of Nucleic-Acid/Protein Complexes for Advances Users
Antoine Moniot
,
Sjoerd de Vries
,
Dave Ritchie
,
Isaure Chauvot de Beauchêne
21e congrès du Groupe de graphisme et modélisation moléculaire (GGMM), Apr 2019, Nice, France
Communication dans un congrès
hal-02393039v1
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Characterization of S628N: a novel KIT mutation found in a metastatic melanoma
Marina Vita
,
Julie C Tisserand
,
Isaure Chauvot de Beauchêne
,
Nicolas Panel
,
Luba Tchertanov
,
et al.
Article dans une revue
hal-01505849v1
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Hotspot mutations in KIT receptor differentially modulate its allosterically coupled conformational dynamics: impact on activation and drug sensitivity
Ariane Allain
,
Isaure Chauvot de Beauchêne
,
Nicolas Panel
,
Elodie Laine
,
Alain Trouvé
,
et al.
Article dans une revue
hal-01505833v1
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The First 3D Model of the Full-Length KIT Cytoplasmic Domain Reveals a New Look for an Old Receptor
François Inizan
,
Myriam Hanna
,
Maxim Stolyarchuk
,
Isaure Chauvot de Beauchêne
,
Luba Tchertanov
Article dans une revue
hal-03000379v1
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Characterization of a relaxase belonging to the MOBT family, a widespread family in Firmicutes mediating the transfer of ICEs
Nicolas Soler
,
Emilie Robert
,
Isaure Chauvot de Beauchêne
,
Philippe Monteiro
,
Virginie Libante
,
et al.
Article dans une revue
hal-02138843v1
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Cryo-EM Data Are Superior to Contact and Interface Information in Integrative Modeling
Sjoerd Jacob de Vries
,
Isaure Chauvot de Beauchêne
,
Christina Eva Maria Schindler
,
Martin Zacharias
Article dans une revue
hal-01505863v1
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A web interface for easy flexible protein-protein docking with ATTRACT
Sjoerd Jacob de Vries
,
Christina Eva Maria Schindler
,
Isaure Chauvot de Beauchêne
,
Martin Zacharias
Article dans une revue
hal-01505828v1
|
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Data-driven identification of structural patterns associated with RNA binding in RNA Recognition Motif domains
Hrishikesh Dhondge
,
Martínez Joel Roca
,
Vranken Wim
,
Marie-Dominique Devignes
,
Isaure Chauvot de Beauchêne
Student Council Symposium (SCS) 2021, Jul 2021, Virtual, France
Poster de conférence
hal-03784168v1
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Singular Interface Dynamics of the SARS-CoV-2 Delta Variant Explained with Contact Perturbation Analysis
Aria Gheeraert
,
Laurent Vuillon
,
Laurent Chaloin
,
Olivier Moncorgé
,
Thibaut Very
,
et al.
Article dans une revue
hal-03708020v1
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EROS-DOCK and EROS-DOCK MULTI-BODY Approach
Maria-Elisa Ruiz-Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
CAPRI evaluation meeting, Apr 2019, Hinxton, United Kingdom
Communication dans un congrès
hal-02394484v1
|
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EROS: A Protein Docking Algorithm Using a Quaternion Pi-Ball Representation for Exhaustive and Accelerated Exploration of 3D Rotational Space
Maria Elisa Ruiz Echartea
,
Isaure Chauvot de Beauchêne
,
David Ritchie
APIL 2018 - Journée d'automne de l'Ecole Doctorale IAEM-Lorraine, Nov 2018, Nancy, France
Poster de conférence
hal-01929546v1
|
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Structure and target interaction of a G-quadruplex RNA-aptamer
Kristina Szameit
,
Katharina Berg
,
Sven Kruspe
,
Erica Valentini
,
Eileen Magbanua
,
et al.
Article dans une revue
hal-01505860v1
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Experiences with a training DSW knowledge model for early-stage researchers
Marie-Dominique Devignes
,
Malika Smaïl-Tabbone
,
Hrishikesh Dhondge
,
Roswitha Dolcemascolo
,
Jose Gavaldá-García
,
et al.
Article dans une revue
hal-04234402v1
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Vers un nouveau traitement des mucopolysaccharidoses ? Recherche d’inhibiteurs de la β1,4-galactosyltransférase 7 (β4GalT7) par des approches combinées de criblage expérimental et virtuel
Sandrine Gulberti
,
Christel Valencia-Schmitt
,
Pascal Villa
,
Isaure Chauvot de Beauchêne
,
Bernard Maigret
,
et al.
Rencontres RARE 2021, Oct 2021, Paris/virtuel, France
Poster de conférence
hal-03522390v1
|
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