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Development of high density linkage maps in European oak for multi-objective genetic applications

 Catherine Bodenes-Brezard Bodénès , Emilie E. Chancerel , Camille Lepoittevin , François Ehrenmann , Isabelle Lesur Kupin Lesur , et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès hal-02805716v1
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Analysis of BAC end sequences in oak, a keystone forest tree species, providing insight into the composition of its genome

 Patricia P. Faivre-Rampant , Isabelle Lesur , Clément Boussardon , Frederique Bitton , Marie-Laure Martin-Magniette , et al.
BMC Genomics, 2011, 12, 13 p. ⟨10.1186/1471-2164-12-292⟩
Article dans une revue hal-02646702v1

The use and domestication of Theobroma cacao during the mid-Holocene in the upper Amazon

 Sonia Zarrillo , Nilesh Gaikwad , Claire Lanaud , Terry Powis , Christopher Viot , et al.
Nature Ecology & Evolution, 2018, 2 (12), pp.1879-1888. ⟨10.1038/s41559-018-0697-x⟩
Article dans une revue hal-02625809v1

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology

 Javier Canales , Rocío Bautista , Philippe Label , Josefa Gómez-Maldonado , Isabelle Lesur Kupin Lesur , et al.
Plant Biotechnology Journal, 2014, 12 (3), pp.286-299. ⟨10.1111/pbi.12136⟩
Article dans une revue hal-02640932v1
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High-density linkage mapping in a pine tree reveals a genomic region associated with inbreeding depression and provides clues to the extent and distribution of meiotic recombination

 Emilie E. Chancerel , Jean-Baptiste J.-B. Lamy , Isabelle Lesur Kupin Lesur , Celine C. Noirot , Christophe C. Klopp , et al.
BMC Biology, 2013, 11, 19 p. ⟨10.1186/1741-7007-11-50⟩
Article dans une revue hal-00964786v1

Discovering genes involved in ecological speciation in European white oaks using an RNAseq approach

 Grégoire G. Le Provost , Isabelle Lesur Kupin Lesur , Céline C. Lalanne , Karine Labadie , Jean Marc Aury , et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741267v1

Oak genome sequencing and evolution

 Jerome J. Salse , Jean Marc Aury , Florent Murat , Sébastien Faye , Karine Labadie , et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02741698v1
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Linkage and association mapping for two major traits used in the maritime pine breeding program: height growth and stem straightness.

 Jérôme Bartholome , Marco Cam Bink , Joost van Heerwaarden , Emilie Chancerel , Christophe Boury , et al.
PLoS ONE, 2016, 11 (11), 21 p. ⟨10.1371/journal.pone.0165323⟩
Article dans une revue hal-02636715v1

Sequencing and analysis of the oak transcriptome using RNA-seq technologies

 Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenmann , Céline Noirot , et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., Oct 2012, Bordeaux, France. 1 p
Communication dans un congrès hal-02806071v1

A sample view of the pedunculate oak (Quercus robur) genome from the sequencing of hypomethylated and random genomic libraries

 Isabelle Lesur , Jérôme J. Durand , Federico Sebastiani , Niclas Gyllenstrand , Catherine Bodenes-Brezard Bodénès , et al.
Tree Genetics and Genomes, 2011, 7 (6), pp.1277-1285. ⟨10.1007/s11295-011-0412-4⟩
Article dans une revue istex hal-02644223v1

De novo assembly of Fagus sylvatica transcriptome based on Sanger and 454 ESTs: application in transcriptome-scale analysis of bud phenology and markers development

 Isabelle Lesur Kupin Lesur , Grégoire G. Le Provost , Céline C. Lalanne , François Ehrenman , Céline Noirot , et al.
IUFRO working group “Genetics of Quercus and Nothofagus”, Oct 2012, Bordeaux, France. 1 p., 2012
Poster de conférence hal-02802761v1
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The genetics of water‐use efficiency in maritime pine and its relation to growth

 Elisa E. Marguerit , Laurent Bouffier , Emilie E. Chancerel , Christophe C. Boury , P. Costa , et al.
Final Conference Noveltree "Tree Breeding, Genomics and Evolutionary Biology: New synergies to tackle the impact of climate change in the 21st century", Oct 2012, Helsinki, Finland. 69 p
Communication dans un congrès hal-02749305v1

Decoding the oak genome: public release of sequence data, assembly, annotation and publication strategies.

 Christophe Plomion , Jean-Marc Aury , Joëlle Amselem , Tina Alaeitabar , Valérie Barbe , et al.
Molecular Ecology Resources, 2015, 16 (1), pp.254-265. ⟨10.1111/1755-0998.12425⟩
Article dans une revue istex hal-01579667v1

High-density SNP assay development for genetic analysis in maritime pine (Pinus pinaster)

 Christophe Plomion , Jérôme Bartholomé , Isabelle Lesur Kupin Lesur , Christophe C. Boury , Isabel Rodríguez-Quilón , et al.
Molecular Ecology Resources, 2016, 16 (2), pp.574-587. ⟨10.1111/1755-0998.12464⟩
Article dans une revue istex hal-02640393v1
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Oak stands along an elevation gradient have different molecular strategies for regulating bud phenology

 Gregoire Le Provost , Céline Lalanne , Isabelle Lesur , Jean-Marc Louvet , Sylvain Delzon , et al.
BMC Plant Biology, 2023, 23 (108), ⟨10.1186/s12870-023-04069-2⟩
Article dans une revue hal-04003618v1
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Influence of landscape structure and cropping system on microbial diversity and microbial interactions in vineyards

 Corinne Vacher , Charlie Pauvert , Thomas Fort , Marc Buée , Valerie Laval , et al.
Séminaire Pôle de Protection des Plantes (CIRAD 3P), Nov 2018, St-Pierre de la Réunion, France
Communication dans un congrès hal-02787591v1
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How does contemporary selection shape oak phenotypes?

 Hermine Alexandre , Laura Truffaut , Etienne Klein , Alexis A. Ducousso , Emilie Chancerel , et al.
Evolutionary Applications, In press, pp.1-19. ⟨10.1111/eva.13082⟩
Article dans une revue hal-02927318v1

Genome evolution in yeasts.

 Bernard Dujon , David Sherman , Gilles Fischer , Pascal Durrens , Serge Casaregola , et al.
Nature, 2004, 430 (6995), pp.35-44. ⟨10.1038/nature02579⟩
Article dans une revue istex hal-00104411v1

Genetic analysis of oleoresin terpenoid content in maritime pine

 Jérôme Bartholomé , Marina de Vega , Isabelle Lesur Kupin Lesur , Franck F. Salin , Emilie E. Chancerel , et al.
Genomics and Forest Tree Genetics Conference, May 2016, Arcachon, France. , 134 p., 2016, Book of abstracts
Poster de conférence hal-02741247v1

Signatures of local adaptation in candidate genes of oaks (Quercus spp.) in respect to present and future climatic conditions

 Christian Rellstab , Stefan Zoller , Lorenz Walthert , Isabelle Lesur Kupin Lesur , Catherine Bodenes-Brezard Bodénès , et al.
Genomics and Forest Tree Genetics Conference, Institut National de Recherche Agronomique (INRA). UMR Biodiversité, Gènes et Communautés (1202)., May 2016, Arcachon, France. 134 p
Communication dans un congrès hal-02744016v1
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Development of highly-multiplexed SNP arrays in Maritime pine for multi-objective genetic applications

 Christophe Plomion , Emilie E. Chancerel , Camille Lepoittevin , Isabelle Lesur , S.C. González-Martínez , et al.
IUFRO Tree Biotechnology Conference 2011 “From genomes to integration and delivery”, Jun 2011, Bahia, Brazil. 3 p., 2011
Poster de conférence hal-02808550v1
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Its all fun guys: a comparison of bioinformatic pipelines for metabarcoding plant and soil fungal communities

 Charlie Pauvert , Marc Buée , Valerie Laval , Véronique Edel-Hermann , Laure Fauchery , et al.
International Phytobiomes Conference 2018, Dec 2018, Montpellier, France. 2018
Poster de conférence hal-01938707v1

Whole platelet transcriptome profiling confirms a cytoskeleton remodeling in platelet components associated with adverse transfusion reactions

 D. Awounou , C. Barlier , C. Aloui , J. Fagan , F. Salin , et al.
52. Conference of the European-Society-of-Human-Genetics (ESHG), Jun 2019, Gothenburg, Sweden. pp.1
Communication dans un congrès hal-02737367v1

Signatures of local adaptation in candidate genes of oaks (Quercus spp.) with respect to present and future climatic conditions

 Christian Rellstab , Stefan Zoller , Lorenz Walthert , Isabelle Lesur Kupin , Andrea R. Pluess , et al.
Molecular Ecology, 2016, 25 (23), pp.5907-5924. ⟨10.1111/mec.13889⟩
Article dans une revue istex hal-01606846v1
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An easy and robust method for isolation and validation of single-nucleotide polymorphic markers from a first Erysiphe alphitoides draft genome

 Cyril Dutech , N. Feau , Isabelle Lesur , François Ehrenmann , Thomas Letellier , et al.
Mycological Progress, 2020, 19 (6), pp.615-628. ⟨10.1007/s11557-020-01580-w⟩
Article dans une revue hal-02768215v1
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Oak genome reveals facets of long lifespan

 Christophe Plomion , Jean-Marc Aury , Joelle Amselem , Thibault Leroy , Florent Murat , et al.
Nature Plants, 2018, 4 (7), pp.440-452. ⟨10.1038/s41477-018-0172-3⟩
Article dans une revue hal-01820559v1
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Development of target sequence capture and estimation of genomic relatedness in a mixed oak stand

 Isabelle Lesur Kupin , Hermine Alexandre , Christophe Boury , Emilie Chancerel , Christophe Plomion , et al.
Frontiers in Plant Science, 2018, 9, pp.1-16. ⟨10.3389/fpls.2018.00996⟩
Article dans une revue hal-02628743v1

A unigene set for European beech (Fagus sylvatica L.) and its use to decipher the molecular mechanisms involved in dormancy regulation

 Isabelle Lesur Kupin Lesur , Alison Bechade , Céline C. Lalanne , Christophe C. Klopp , Céline Noirot , et al.
Molecular Ecology Resources, 2015, 15 (5), pp.1192-1204. ⟨10.1111/1755-0998.12373⟩
Article dans une revue istex hal-02640346v1
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“PLANT-KBBE SUSTAINPINE” Genomic tools in maritime Pine for enhanced biomass production and sustainable forest management

 Andrea Rupps , Kurt Zoglauer , Vornam Barbara , Reiner Finkeldey , María-Teresa Cervera , et al.
PLANT 2030 Status Seminar 2013, Mar 2013, Potsdam, Germany. , 2013
Poster de conférence hal-02808492v1
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The oak gene expression atlas: insights into Fagaceae genome evolution and the discovery of genes regulated during bud dormancy release

 Isabelle Lesur , Grégoire G. Le Provost , Pascal Bento , Corinne da Silva , Jean-Charles Leplé , et al.
BMC Genomics, 2015, 16 (1), pp.112. ⟨10.1186/s12864-015-1331-9⟩
Article dans une revue hal-02285504v1
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