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CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus.
Ivan Junier
,
Ryan K Dale
,
Chunhui Hou
,
François Képès
,
Ann Dean
Article dans une revue
hal-00732516v1
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Experimental free-energy measurements of kinetic molecular states using fluctuation theorems
Anna Alemany
,
Alessandro Mossa
,
Ivan Junier
,
Felix Ritort
Article dans une revue
hal-01635957v1
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Spatial and topological organization of DNA chains induced by gene co-localization
Ivan Junier
,
Olivier C. Martin
,
François Képès
Article dans une revue
hal-00484355v1
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Parallel stepwise stochastic simulation: Harnessing GPUs to Explore Possible Futures States of a Chromosome Folding Model Thanks to the Possible Futures Algorithm (PFA)
Jonathan Passerat-Palmbach
,
Jonathan Caux
,
Yannick Le Pennec
,
Romain Reuillon
,
Ivan Junier
,
et al.
SIGSIM-PADS’13 - ACM SIGSIM Conference on Principles of Advanced Discrete Simulation (PADS), May 2013, Montreal, Canada. pp.169 - 177, ⟨10.1145/2486092.2486114⟩
Communication dans un congrès
hal-01098546v1
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Computational tools for the multiscale analysis of Hi-C data in bacterial chromosomes
Nelle Varoquaux
,
Virginia S Lioy
,
Frédéric Boccard
,
Ivan Junier
Chapitre d'ouvrage
hal-03375884v1
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Conserved Units of Co-Expression in Bacterial Genomes: An Evolutionary Insight into Transcriptional Regulation
Ivan Junier
,
Olivier Rivoire
Article dans une revue
hal-01653838v1
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Tailoring symmetry groups using external alternate fields
Ivan Junier
,
Jorge Kurchan
EPL - Europhysics Letters, 2003, 63 (5), pp.674--680
Article dans une revue
hal-00160769v1
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The layout of a bacterial genome
François Képès
,
Brian C. Jester
,
Thibaut Lepage
,
Nafiseh Rafiei
,
Bianca Rosu
,
et al.
Article dans une revue
hal-01635955v1
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CTCF-mediated transcriptional regulation through cell type-specific chromosome organization in the β-globin locus
Ivan Junier
,
Ryan K. Dale
,
Chunhui Hou
,
François Képès
,
Ann Dean
Article dans une revue
hal-01635956v1
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Spatial Information and Boolean Genetic Regulatory Networks.
Matthieu Manceny
,
Marc Aiguier
,
Pascale Le Gall
,
Joan Hérisson
,
Ivan Junier
,
et al.
Communication dans un congrès
hal-00812184v1
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A polymer model of bacterial supercoiled DNA including structural transitions of the double helix
Thibaut Lepage
,
Ivan Junier
Article dans une revue
hal-02283136v1
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Intracellular Positioning Systems Limit the Entropic Eviction of Secondary Replicons Toward the Nucleoid Edges in Bacterial Cells
Julie Dauverd -Girault
,
Charlène Planchenault
,
Marine Pons
,
Caroline Schiavon
,
Patricia Siguier
,
et al.
Article dans une revue
hal-02392007v1
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Modeling supercoiled DNA interacting with an anchored cluster of proteins: towards a quantitative estimation of chromosomal DNA supercoiling
Jean-Charles Walter
,
Thibaut Lepage
,
Jerome Dorignac
,
Frederic Geniet
,
Andrea Parmeggiani
,
et al.
2020
Pré-publication, Document de travail
hal-02990631v1
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Universal and idiosyncratic characteristic lengths in bacterial genomes
Ivan Junier
,
Paul Frémont
,
Olivier Rivoire
Article dans une revue
hal-01972786v1
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From structure to function of bacterial chromosomes: Evolutionary perspectives and ideas for new experiments
Marco Cosentino Lagomarsino
,
Olivier Espéli
,
Ivan Junier
Article dans une revue
hal-01528521v1
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Etude de systemes hors equilibre
Ivan Junier
Matière Condensée [cond-mat]. Université Paris-Diderot - Paris VII, 2004. Français. ⟨NNT : ⟩
Thèse
tel-00007153v1
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Supercoiled DNA and non-equilibrium formation of protein complexes: A quantitative model of the nucleoprotein ParBS partition complex
Jean-Charles Walter
,
Thibaut Lepage
,
Jerome Dorignac
,
Frédéric Geniet
,
Andrea Parmeggiani
,
et al.
Article dans une revue
hal-03438826v1
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Evolution of Ubiquinone Biosynthesis: Multiple Proteobacterial Enzymes with Various Regioselectivities To Catalyze Three Contiguous Aromatic Hydroxylation Reactions
Ludovic Pelosi
,
Anne-Lise Ducluzeau
,
Laurent Loiseau
,
Frédéric Barras
,
Dominique Schneider
,
et al.
Article dans une revue
hal-01424513v1
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circHiC: circular visualization of Hi-C data and integration of genomic data
Ivan Junier
,
Nelle Varoquaux
2021
Pré-publication, Document de travail
hal-02945275v1
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Intracellular positioning systems limit the entropic eviction of secondary replicons toward the nucleoid edges in bacterial cells
Charlene Planchenault
,
Marine Pons
,
Caroline Schiavon
,
Patricia Siguier
,
Jérôme Rech
,
et al.
2019
Pré-publication, Document de travail
hal-02366139v1
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A Two-Enzyme Adaptive Unit within Bacterial Folate Metabolism
A.F. Schober
,
A.D. Mathis
,
C. Ingle
,
J.O. Park
,
Lin Chen
,
et al.
Article dans une revue
hal-02283154v1
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Microscopic realizations of the trap model
Ivan Junier
,
Jorge Kurchan
Journal of Physics A: Mathematical and Theoretical, 2004, 37 (13), pp.3945--3965
Article dans une revue
hal-00160774v1
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Stable community cores in complex networks
Massoud Seifi
,
Jean-Loup Guillaume
,
Ivan Junier
,
Jean-Baptiste Rouquier
,
Svilen Iskrov
Communication dans un congrès
istex
hal-01273060v1
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Insights into the Mechanisms of Basal Coordination of Transcription Using a Genome-Reduced Bacterium
Ivan Junier
,
E. besray Unal
,
Eva Yus
,
Verónica Lloréns-Rico
,
Luis Serrano
Article dans une revue
hal-01653839v1
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Modeling Bacterial DNA: Simulation of Self-avoiding Supercoiled Worm-Like Chains Including Structural Transitions of the Helix
Thibaut Lepage
,
Ivan Junier
The Bacterial Nucleoid, 2017
Chapitre d'ouvrage
hal-01655027v1
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Requirements for DNA-Bridging Proteins to Act as Topological Barriers of the Bacterial Genome
Marc Joyeux
,
Ivan Junier
Article dans une revue
hal-03017254v1
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Genomic Organization of Evolutionarily Correlated Genes in Bacteria: Limits and Strategies
Ivan Junier
,
Joan Hérisson
,
François Képès
Article dans une revue
istex
hal-01635954v1
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