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Exponentially few RNA structures are designable

Hua-Ting Yao , Cedric Chauve , Mireille Regnier , Yann Ponty
ACM-BCB 2019 - 10th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, Sep 2019, Niagara-Falls, United States. pp.289-298, ⟨10.1145/3307339.3342163⟩
Communication dans un congrès hal-02141853v2
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Stochastic Sampling of Structural Contexts Improves the Scalability and Accuracy of RNA 3D Modules Identification

Roman Sarrazin-Gendron , Hua-Ting Yao , Vladimir Reinharz , Carlos G Oliver , Yann Ponty , et al.
RECOMB 2020 - 24th Annual International Conference on Research in Computational Molecular Biology, May 2020, Padova, Italy
Communication dans un congrès hal-02354733v1
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Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package

Hua-Ting Yao , Ronny Lorenz , Ivo L Hofacker , Peter F Stadler
Algorithms for Molecular Biology, 2023, 18, pp.8. ⟨10.1186/s13015-023-00236-0⟩
Article dans une revue hal-04062134v2
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Sequence design for RNA-RNA interactions

Maria Waldl , Hua-Ting Yao , Ivo Hofacker
2024
Pré-publication, Document de travail hal-04517643v1
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Developing complex RNA design applications in the Infrared framework

Hua-Ting Yao , Yann Ponty , Sebastian Will
RNA Folding - Methods and Protocols, 2022
Chapitre d'ouvrage hal-03711828v2
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Advanced design of structural RNAs using RNARedPrint

Yann Ponty , Stefan Hammer , Hua-Ting Yao , Sebastian Will
Ernesto Picardi. RNA Bioinformatics, 2284, pp.1--15, 2021, Methods in Molecular Biology, 978-1-0716-1306-1. ⟨10.1007/978-1-0716-1307-8_1⟩
Chapitre d'ouvrage hal-02990264v1
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Taming Disruptive Base Pairs to Reconcile Positive and Negative Structural Design of RNA

Hua-Ting Yao , Jérôme Waldispühl , Yann Ponty , Sebastian Will
RECOMB 2021 - 25th international conference on research in computational molecular biology, Apr 2021, Padova, France
Communication dans un congrès hal-02987566v2
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Infrared: a declarative tree decomposition-powered framework for bioinformatics

Hua-Ting Yao , Bertrand Marchand , Sarah J. Berkemer , Yann Ponty , Sebastian Will
Algorithms for Molecular Biology, 2024, ⟨10.1186/s13015-024-00258-2⟩
Article dans une revue hal-04211173v2
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Local decomposition in RNA structural design

Hua-Ting Yao
Bioinformatics [q-bio.QM]. Institut Polytechnique de Paris; McGill university (Montréal, Canada), 2021. English. ⟨NNT : 2021IPPAX126⟩
Thèse tel-03538576v3