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    84

    Hélène Chiapello


    Professional experience

    • INRAE: research engineer in microbial bioinformatics at the Microbiology and the food chain (MICA) scientific division, MaIAGE (Applied Mathematics and Computer Science, from Genomes to Environment) research unit, INRAE Jouy-en-Josas, France

    • SFBI (French Society of Bioinformatics): member of the board (2014-2020) and deputy president (2016-2020)

    • IFB (French Institute of Bioinformatics): co-coordinator of Training (since 2017), member of the steering committee (since 2020) and Elixir deputy Training coordinator (since 2021)

    • DUBii (University Diploma in Integrative Bioinformatics): Co-head of the diploma since 2018

    Education

    • 2016: HDR - Paul Sabatier university (Toulouse 3)

    • 1999: PhD - Pierre & Marie Curie university (Paris 6)

    • 1990: Master in Biochemistry - Pierre & Marie Curie university (Paris 6)


    Journal articles37 documents

    • Julie Lao, Gérard Guédon, Thomas Lacroix, Florence Charron-Bourgoin, Virginie Libante, et al.. Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment. Genes, MDPI, 2020, ⟨10.3390/genes11090999⟩. ⟨hal-02922962⟩
    • Franck Cerutti, Ludovic Mallet, Anaïs Painset, Claire Hoede, Annick Moisan, et al.. Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria. BMC Genomics, BioMed Central, 2017, 18 (1), pp.882. ⟨10.1186/s12864-017-4242-0⟩. ⟨pasteur-01740259⟩
    • Hela El Kafsi, Valentin Loux, Mahendra Mariadassou, Camille Blin, Hélène Chiapello, et al.. Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue. Scientific Reports, Nature Publishing Group, 2017, 7, pp.44331. ⟨10.1038/srep44331⟩. ⟨hal-01509688⟩
    • Christophe Bécavin, Mikael Koutero, Nicolas Tchitchek, Franck Cerutti, Pierre Lechat, et al.. Listeriomics: an Interactive Web Platform for Systems Biology of Listeria. mSystems, 2017, 2 (2), pp.e00186-16. ⟨10.1128/mSystems.00186-16⟩. ⟨pasteur-01574970⟩
    • Ludovic Mallet, Tristan Bitard-Feildel, Franck Cerutti, Hélène Chiapello. PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies. Bioinformatics, Oxford University Press (OUP), 2017, 33 (20), pp.3283 - 3285. ⟨10.1093/bioinformatics/btx396⟩. ⟨hal-02625602⟩
    • Thomas Esquerre, Annick Moisan, Helene Chiapello, Liisa Arike, Raivo Vilu, et al.. Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates. BMC Genomics, BioMed Central, 2015, 16 (1), ⟨10.1186/s12864-015-1482-8⟩. ⟨hal-01269038⟩
    • Raluca Uricaru, Célia Michotey, Hélène Chiapello, Eric Rivals. YOC, A new strategy for pairwise alignment of collinear genomes. BMC Bioinformatics, BioMed Central, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩. ⟨lirmm-01170968⟩
    • Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriela Aguileta, Joelle Amselem, et al.. Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2015, 7 (10), pp.2896-2912. ⟨10.1093/gbe/evv187⟩. ⟨hal-01222884v2⟩
    • Valentin Loux, Mahendra Mariadassou, Sintia Almeida, Hélène Chiapello, Amal Hammani, et al.. Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii. BMC Genomics, BioMed Central, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩. ⟨hal-01142363⟩
    • Jean-Claude Ogier, Sylvie Pages, Gaelle Bisch, Helene Chiapello, Claudine Médigue, et al.. Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii. Genome Biology and Evolution, Society for Molecular Biology and Evolution, 2014, 6, pp.1495-1513. ⟨10.1093/gbe/evu119⟩. ⟨hal-01837258⟩
    • Olivier Grépinet, Aurore Rossignol, Valentin Loux, Helene Chiapello, Annie Gendrault, et al.. Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (9), pp.2387-2388. ⟨10.1128/JB.00256-12⟩. ⟨hal-03044203⟩
    • Gabriela Aguileta, Juliette Lengellé, Helene Chiapello, Tatiana Giraud, Muriel Viaud, et al.. Genes under positive selection in a model plant pathogenic fungus, Botrytis. Infection, Genetics and Evolution, Elsevier, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩. ⟨hal-01000313⟩
    • Olivier Grépinet, Zineb Boumart, Isabelle Virlogeux-Payant, Valentin Loux, Hélène Chiapello, et al.. Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209. Journal of Bacteriology, American Society for Microbiology, 2012, 194 (9), pp.2385-2386. ⟨10.1128/JB.00255-12⟩. ⟨hal-02643377⟩
    • Hugo Devillers, Helene Chiapello, Sophie Schbath, Meriem El Karoui. Robustness assessment of whole bacterial genome segmentations. Journal of Computational Biology, Mary Ann Liebert, 2011, 18 (9), pp.1155-1165. ⟨10.1089/cmb.2011.0115⟩. ⟨hal-00999893⟩
    • Christine Delorme, Eric Guédon, Nicolas Pons, Corinne Cruaud, Arnaud Couloux, et al.. Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3. Journal of Bacteriology, American Society for Microbiology, 2011, 193 (18), pp.5041-5042. ⟨10.1128/JB.05416-11⟩. ⟨hal-01000176⟩
    • Chloé Ambroset, Maud Petit, Christian Brion, Isabelle Sanchez, Pierre Delobel, et al.. Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach. G3, Genetics Society of America, 2011, 1, pp.263-281. ⟨10.1534/G3.111.000422⟩. ⟨hal-01487358⟩
    • Thomas Lacroix, Valentin Loux, Annie Gendrault, Jean-François Gibrat, Hélène Chiapello. CompaGB: An open framework for genome browsers comparison. BMC Research Notes, BioMed Central, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩. ⟨hal-02644023⟩
    • Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El-Karoui. Assessing the robustness of complete bacterial genome segmentations. Lecture Notes in Computer Science, Springer, 2010, 6398, pp.173-187. ⟨10.1007/978-3-642-16181-0_15⟩. ⟨hal-02654924⟩
    • Roxana Yockteng, Sylvain Marthey, Hélène Chiapello, Annie Gendrault, Michael Hood, et al.. Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes. BMC Genomics, BioMed Central, 2009, 8 (1), pp.272. ⟨10.1186/1471-2164-8-272⟩. ⟨hal-02333218⟩
    • L. Bletzacker, Hélène Chiapello, Morgane Delorme, P. Ferrand, A. Henaut, et al.. Que faire de nos biodéchets : production d'énergie ou production de compost ? État des connaissances et des techniques de traitement pour une valorisation optimale. Ingénieries eau-agriculture-territoires, Lavoisier ; IRSTEA ; CEMAGREF, 2009, pp.89-100. ⟨hal-02592224⟩
    • Marie Touchon, Claire Hoede, Olivier Tenaillon, Valérie Barbe, Simon Baeriswyl, et al.. Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.. PLoS Genetics, Public Library of Science, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩. ⟨hal-00390293⟩
    • Helene Chiapello, Annie Gendrault-Jacquemard, Christophe Caron, Jerome Blum, Marie Agnes Petit, et al.. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. 312, 2008, 9 (498), pp.on line. ⟨hal-00487406⟩
    • Sylvain Marthey, Gabriela Aguileta, Francois Rodolphe, Annie Gendrault, Tatiana Giraud, et al.. FUNYBASE: the FUNGAL phYlogenomic database. BMC Bioinformatics, BioMed Central, 2008, 9 (456), pp.1-10. ⟨10.1186/1471-2105-9-456⟩. ⟨hal-01193636⟩
    • Séverine A Degrelle, Christelle Hennequet-Antier, Hélène Chiapello, Karine Piot-Kaminski, Francois Piumi, et al.. Amplification biases: possible differences among deviating gene expressions.. BMC Genomics, BioMed Central, 2008, 9 (46), pp.46. ⟨10.1186/1471-2164-9-46⟩. ⟨cea-00307623⟩
    • Helene Chiapello, Annie Gendrault-Jacquemard, Christophe Caron, Jerome Blum, Marie Agnes Petit, et al.. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. 312, 2008, 9 (498), pp.on line. ⟨hal-00490135⟩
    • Helene Chiapello, Annie Gendrault-Jacquemard, Christophe Caron, Jerome Blum, Marie Agnes Petit, et al.. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. 312, 2008, 9 (498), pp.on line. ⟨hal-00490583⟩
    • Hélène Chiapello, Annie Gendrault, Christophe Caron, Jerome Blum, Marie Agnes Petit, et al.. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. BMC Bioinformatics, BioMed Central, 2008, 9 (498), pp.on line. ⟨hal-02655905⟩
    • T. Giraud, R. Yockteng, Sylvain Marthey, Hélène Chiapello, Odile Jonot, et al.. Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum. Molecular Ecology Resources, Wiley/Blackwell, 2008, 8 (2), pp.387-392. ⟨10.1111/j.1471-8286.2007.01967.x⟩. ⟨hal-02665569⟩
    • Helene Chiapello, Annie Gendrault-Jacquemard, Christophe Caron, Jerome Blum, Marie Agnes Petit, et al.. MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level. 312, 2008, 9 (498), pp.on line. ⟨hal-00489678⟩
    • David Halpern, Helene Chiapello, Sophie Schbath, Stephane Robin, Christelle Hennequet-Antier, et al.. Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling. PLoS Genetics, Public Library of Science, 2007, 3 (9), pp.1614-1621;e153. ⟨10.1371/journal.pgen.0030153⟩. ⟨hal-01197542⟩
    • Christelle Hennequet-Antier, Helene Chiapello, Karine Piot, Severine Degrelle, Isabelle Hue, et al.. AnovArray: a set of SAS macros for the analysis of variance of gene expression data. BMC Bioinformatics, BioMed Central, 2005, 6, pp.150. ⟨10.1186/1471-2105-6-150⟩. ⟨inserm-02440250⟩
    • Hélène Chiapello, Isabelle Bourgait, Frédéric Sourivong, Gaëlle Heuclin, Annie Gendrault, et al.. Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops. BMC Bioinformatics, BioMed Central, 2005, 6, pp.171. ⟨10.1186/1471-2105-6-171⟩. ⟨hal-02683426⟩
    • A. Louis, Hélène Chiapello, C. Fabry, E. Ollivier, A. Henaut. Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations. Computers and Chemistry, Elsevier, 2002, 26 (5), pp.511-519. ⟨10.1016/S0097-8485(02)00011-6⟩. ⟨hal-02676436⟩
    • Béatrice Courtial, F. Feuerbach, S. Eberhard, Laurence Rohmer, Hélène Chiapello, et al.. Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes. Molecular Genetics and Genomics, Springer Verlag, 2001, pp.32-42. ⟨hal-02680720⟩
    • Hélène Chiapello, F. Lisacek, Michel Caboche, A. Henaut. Codon usage and gene function are related in sequences of Arabidopsis thaliana. Gene, Elsevier, 1998, 209, pp.GC1-GC38. ⟨hal-02689970⟩
    • R. Cooke, Marc Raynal, M. Laudié, F. Grellet, Michel Delseny, et al.. Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs. Plant Journal, Wiley, 1996, 9 (1), pp.101-124. ⟨hal-02688410⟩
    • Hermanus Höfte, Thierry Desprez, J. Anselem, Hélène Chiapello, Michel Caboche, et al.. An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana. Plant Journal, Wiley, 1993, 4 (6), pp.1051-1061. ⟨hal-02715837⟩

    Conference papers24 documents

    • Sandra Derozier, Sam Ah-Lone, Valentin Loux, Hélène Chiapello. A workflow to build a relevant and reduced bacterial dataset from NCBI. JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France. ⟨hal-02733948⟩
    • Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, et al.. The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.. 8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France. ⟨hal-02974531⟩
    • Hélène Chiapello. Evolution et co-évolution des petits ARNs régulateurs et des gènes codants chez les bactéries. ANSES - Séminaire DEBUG, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES). FRA., Jun 2018, Toulouse, France. ⟨hal-02790775⟩
    • Jérôme Mariette, Helene Chiapello, Nathalie Villa-Vialaneix. Integrating Tara oceans data sets using multiple kernels. 15th European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2016, The Hague, Netherlands. pp.3. ⟨hal-02792439⟩
    • Elisabeth Fournier, E Ortega-Abboud, Ludovic Mallet, Helene Chiapello, Cyprien Guerin, et al.. Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants. 27th Fungal Genetics Conference, Mar 2013, Asilomar, United States. pp.281. ⟨hal-01001508⟩
    • Helene Chiapello, Ludovic Mallet, Cyprien Guerin, Gabriella Aguileta, Francois Rodolphe, et al.. Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade.. 27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. p.76. ⟨hal-01001510⟩
    • Aurore Rossignol, Sylvie Roche, Isabelle Virlogeux-Payant, Olivier Grépinet, Nadia Abed, et al.. Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella Enteritidis. I3S International Symposium Salmonella and Salmonellosis, Institut National de la Recherche Agronomique (INRA). FRA., May 2013, Saint Malo, France. ⟨hal-02749048⟩
    • Jean-Claude Ogier, Sylvie Pages, Gaelle Bisch, Sebastien Carrere, Helene Chiapello, et al.. Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects. 5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne. ⟨hal-01837266⟩
    • E. Ortega-Abboud, Ludovic Mallet, Cyprien Guerin, Jonathan Kreplak, Joelle Amselem, et al.. GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe. 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.82-82. ⟨hal-01019005⟩
    • Ludovic Mallet, Cyprien Guerin, Veronique Martin, Enrique Ortega-Abboud, Jonathan Kreplak, et al.. The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae. JOBIM-Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.379-380. ⟨hal-01000934⟩
    • Helene Chiapello. Alignement de génomes bactériens : méthodes, évaluation et exemples d'applications.. Seminaire IRISA ( Symbiose ), Jan 2012, Rennes, France. ⟨hal-02806114⟩
    • Hélène Falentin, Valentin Loux, Valérie Barbe, Amal Plaudet Hammani, Stéphanie-Marie Deutsch, et al.. Genomic diversity of 24 Propionibacterium freudenreichii 1 strains. 6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy. ⟨hal-01454328⟩
    • Cyprien Guérin, Ludovic Mallet, Jonathan Kreplak, Joelle Amselem, Elisabeth Fournier, et al.. The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae. Conférence EMBO, Nov 2011, Sant Feliu de Guixols, Spain. pp.1. ⟨hal-01000676⟩
    • Helene Chiapello. Evaluation et comparaison de logiciels de visualisation et d’exploration de génomes. Seminaire Institut Pasteur, 2011, Paris, France. ⟨hal-02803608⟩
    • Helene Chiapello. Comparaison et annotation de 9 génomes de Magnaporthe. Réunion du groupe Champignons du REID, Nov 2011, Paris, France. ⟨hal-02802981⟩
    • Elisabeth Fournier, Didier Tharreau, Thomas Kroj, Hélène Chiapello, Gabriela Aguileta, et al.. GEMO: an innovative project on Evolutionary Genomics of Magnaporthe oryzae. 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France. ⟨hal-02751005⟩
    • Helene Chiapello. Comparison and evolution of closely related genomes: methods and examples of applications in bacteria and fungi. Séminaire du LIPM, Institut National de Recherche Agronomique (INRA). UMR Interactions Plantes - Microorganismes (0441)., Nov 2010, Toulouse, France. ⟨hal-02812455⟩
    • Hugo Devillers, Hélène Chiapello, Sophie Schbath, Meriem El-Karoui. Assessing the robustness of complete bacterial genome. RECOMB-CG 2010, Oct 2010, Ottawa, Canada. ⟨10.1007/978-3-642-16181-0_15⟩. ⟨hal-02814833⟩
    • Thomas Lacroix, Valentin Loux, Annie Gendrault, Jean-François Gibrat, Helene Chiapello. Evaluating Genome Browsers Using a Software Qualification Method Evaluation. JOBIM 2010, Sep 2010, Montpellier, France. pp.196. ⟨hal-02751310⟩
    • Célia Michotey, Ludovic Legrand, Helene Chiapello, Valentin Loux, Annie Gendrault-Jacquemard, et al.. Web services for microbial genome annotation using data integration. JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. ⟨hal-02752226⟩
    • Cyprien Guérin, Helene Chiapello, Pierre Nicolas. Origine des Spécificités Phénotypiques de la Levure œnologique a travers une Approche Génomique. JOBIM 2010 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.184. ⟨hal-02751369⟩
    • Hugo Devillers, Helene Chiapello, Meriem El Karoui, Sophie Schbath. How to measure the robustness of bacterial genome comparisons?. 10èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.257. ⟨hal-01204257⟩
    • Raluca Uricaru, Célia Michotey, Laurent Noé, Hélène Chiapello, Eric Rivals. Improved Sensitivity And Reliability Of Anchor Based Genome Alignment. JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36. ⟨lirmm-00407215⟩
    • Raluca Uricaru, Célia Michotey, Laurent Noé, Helene Chiapello, Eric Rivals. Improved sensitivity and reliability of anchor based genome alignment. JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p. ⟨hal-02751358⟩

    Poster communications15 documents

    • Anne-Carmen Sanchez, Guillaume Kon Kam King, Sylvie Baucheron, Fanny Calenge, Hélène Chiapello, et al.. Precise detection of antibiotic resistance genes in chicken microbiota. Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France. ⟨hal-03337234⟩
    • Hélène Chiapello, Thomas Denecker, Gildas Le Corguillé, Pierre Poulain, Denis Puthier, et al.. The IFB e-Learning Working Group. JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France. ⟨hal-03296617⟩
    • Charles Coluzzi, Julie Lao, Gérard Guédon, Marie-Dominique Devignes, Chloé Ambroset, et al.. The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus. 4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada. ⟨hal-02974525⟩
    • Joanna Fourquet, Adeline Chaubet, Hélène Chiapello, Christine Gaspin, Marisa Haenni, et al.. Whole metagenome analysis with metagWGS. JOBIM 2019, Jul 2019, Nantes, France. 2019. ⟨hal-02788137⟩
    • Julie Lao, Gérard Guédon, Thomas Lacroix, Nathalie Leblond-Bourget, Helene Chiapello. Towards an integrated approach for the annotation of ICEs and IMEs in bacterial genomes. JOBIM 2018, Jul 2018, Marseille, France. ⟨hal-01829606⟩
    • Hélène Chiapello, Samuel Mondy, Morgane Thomas-Chollier. Groupe de travail sur les Métiers de la Bioinformatique (MetBIF). JOBIM 2018, Jul 2018, Marseille, France. ⟨hal-03287534⟩
    • Ludovic Mallet, Claire Hoede, Franck Cerruti, Annick Moisan, Christine Gaspin, et al.. Host tropism and host-pathogen interplay of typhoidal Salmonella enterica. JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017. ⟨hal-01603254⟩
    • Iason Tsarmpopoulos, Camille Jollard, Géraldine Gourgues, Alain Blanchard, Isabelle Dutour, et al.. Investigating mycoplasma small non-coding RNAs using synthetic biology tools. Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. 2016. ⟨hal-02742260⟩
    • Ludovic Mallet, Cyprien Guérin, Joelle Amselem, Elisabeth Fournier, Helene Chiapello. The GEMO project: Hitchhiking DNA in Magnaporthe oryzae. JOBIM 2015. Meeting of working Group Medicago sativa, Jul 2015, Clermont-Ferrand, France. 1123 p., 2015. ⟨hal-02801084⟩
    • Valentin Loux, Mahendra Mariadassou, Sintia Almeida da Silva, Hélène Chiapello, Amal Hammami, et al.. Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii. 20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. 2015. ⟨hal-01170054⟩
    • Valentin Loux, Mahendra Mariadassou, Sintia Almeida da Silva, Helene Chiapello, Amal Hammami, et al.. Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of [i]Propionibacterium freudenreichii[/i]. JOBIM 16.Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. 2015. ⟨hal-01209851⟩
    • Ludovic Mallet, Helene Chiapello, Cyprien Guerin, Marc Henri Lebrun, Elisabeth Fournier, et al.. Comparative analysis of transposable elements in the Magnaporthe oryzae/grisea clade. PAG - Plant Animal Genome,, Jan 2013, San Diego, United States. 2013. ⟨hal-01190539⟩
    • Joelle Amselem, Ludovic Mallet, Helene Chiapello, Cyprien Guerin, Marc-Henri Lebrun, et al.. Distribution and evolution of transposable elements in the Magnaporthe oryzae/grisea clade. 27. Fungal Genetics Conference, Mar 2013, Asilomar Conference Grounds, United States. 2013. ⟨hal-01190331⟩
    • Sandra Derozier, Helene Chiapello, Thomas Lacroix, Cyprien Guérin, Valentin Loux, et al.. IGO, Integration from Genomes to Organisms. JOBIM 2013, Jul 2013, Toulouse, France. pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches). ⟨hal-02746442⟩
    • Marc-Henri Lebrun, Ludovic Mallet, Cyprien Guerin, Hélène Chiapello, Enrique Ortega-Abboud, et al.. Genome evolution of fungal pathoens from Magnaporthe oryzae/grisea clade. XV International congress on Molecular plant-microbe interactions, 29 juillet au 02 août 2012,, Jul 2012, Kyoto, Japan. 2012, Poster session 21 - Structural biology. ⟨hal-02748600⟩

    Books1 document

    • Mark Hoebeke, Hélène Chiapello, Philippe Noirot, Philippe Bessières. SPiD: a subtilis protein interaction database. 5 p., 2000. ⟨hal-02839427⟩

    Book sections7 documents

    • Hélène Chiapello, Alexandra Louis. Banques et bases de données en biologie. Bio-Informatique - principes d'utilisation des outils, Editions Quae, 2010. ⟨hal-02823616⟩
    • Hélène Chiapello, Francois Rodolphe. Introduction to bioinformatics. Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4. ⟨hal-02820083⟩
    • Pierre Nicolas, Hélène Chiapello. Gene prediction. Functional plant genomics, Science Publishers, 2007, 978-1-57808-506-4. ⟨hal-02815636⟩
    • Hélène Chiapello. Databases in biology. Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4. ⟨hal-02814265⟩
    • Hélène Chiapello. Banques et bases de données en biologie. La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5. ⟨hal-02832814⟩
    • P. Nicolas, Hélène Chiapello. Prédiction de gènes. La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5. ⟨hal-02830852⟩
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