Hélène Chiapello

100

Documents

Identifiants chercheurs

helene-chiapello
0000-0001-5102-0632
IdRef : 225345390

Présentation

Publications

	Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates Jeanne Laurentie , Valentin Loux , Christelle Hennequet-Antier , Emilie Chambellon , Julien Deschamps MSphere, 2023, 8 (2), pp.e0049522. ⟨10.1128/msphere.00495-22⟩ Article dans une revue hal-04004063v1
	ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures Julie Lao , Thomas Lacroix , Gérard Guédon , Charles Coluzzi , Sophie Payot NAR Genomics and Bioinformatics, 2022, 4 (4), pp.lqac079. ⟨10.1093/nargab/lqac079⟩ Article dans une revue hal-03832376v1
	EMERGEN-BioInfo The digital platform for the French SARS-CoV-2 genomic surveillance and research program Thomas Denecker , Imane Messak , Anliat Mohamed , Chiara Antoinat , Arthur Le Bars Les Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM) , 2022, ⟨10.5281/ZENODO.6778707⟩ Article dans une revue hal-04495542v1
	Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny Sandrine Auger , Virginie Mournetas , Hélène Chiapello , Valentin Loux , Philippe Langella PLoS ONE, 2022, 17 (11), pp. e0271847. ⟨10.1371/journal.pone.0271847⟩ Article dans une revue hal-04083924v1
	Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium Helit Cohen , Claire Hoede , Felix Scharte , Charles Coluzzi , Emiliano Cohen PLoS Pathogens, 2022, 18 (4), 35 p. ⟨10.1371/journal.ppat.1010425⟩ Article dans une revue hal-03690615v1
	Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante Genes, 2020, ⟨10.3390/genes11090999⟩ Article dans une revue hal-02922962v1
	Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria Franck Cerutti , Ludovic Mallet , Anaïs Painset , Claire Hoede , Annick Moisan BMC Genomics, 2017, 18 (1), pp.882. ⟨10.1186/s12864-017-4242-0⟩ Article dans une revue pasteur-01740259v1
	Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue Hela El Kafsi , Valentin Loux , Mahendra Mariadassou , Camille Blin , Hélène Chiapello Scientific Reports, 2017, 7, pp.1-11. ⟨10.1038/srep44331⟩ Article dans une revue hal-01509688v1
	Listeriomics : an Interactive Web Platform for Systems Biology of Listeria Christophe Bécavin , Mikael Koutero , Nicolas Tchitchek , Franck Cerutti , Pierre Lechat mSystems, 2017, 2 (2), pp.e00186-16. ⟨10.1128/mSystems.00186-16⟩ Article dans une revue pasteur-01574970v1
	PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies Ludovic Mallet , Tristan Bitard-Feildel , Franck Cerutti , Hélène Chiapello Bioinformatics, 2017, 33 (20), pp.3283 - 3285. ⟨10.1093/bioinformatics/btx396⟩ Article dans une revue hal-02625602v1
	Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates Thomas Esquerre , Annick Moisan , Helene Chiapello , Liisa Arike , Raivo Vilu BMC Genomics, 2015, 16 (1), ⟨10.1186/s12864-015-1482-8⟩ Article dans une revue hal-01269038v1
	Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants Helene Chiapello , Ludovic Mallet , Cyprien Guerin , Gabriela Aguileta , Joelle J. Amselem Genome Biology and Evolution, 2015, 7 (10), pp.2896-2912. ⟨10.1093/gbe/evv187⟩ Article dans une revue hal-01222884v2
	Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii Valentin Loux , Mahendra Mariadassou , Sintia Almeida , Hélène Chiapello , Amal Hammani BMC Genomics, 2015, 16 (1), pp.35. ⟨10.1186/s12864-015-1467-7⟩ Article dans une revue hal-01142363v1
	YOC, A new strategy for pairwise alignment of collinear genomes Raluca Uricaru , Célia Michotey , Hélène Chiapello , Eric Rivals BMC Bioinformatics, 2015, 16 (1), pp.16:111. ⟨10.1186/s12859-015-0530-3⟩ Article dans une revue lirmm-01170968v1
	Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Helene Chiapello , Claudine Médigue Genome Biology and Evolution, 2014, 6, pp.1495-1513. ⟨10.1093/gbe/evu119⟩ Article dans une revue hal-01837258v1
	Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209 Olivier Grépinet , Zineb Boumart , Isabelle Virlogeux-Payant , Valentin Loux , Hélène Chiapello Journal of Bacteriology, 2012, 194 (9), pp.2385-2386. ⟨10.1128/JB.00255-12⟩ Article dans une revue hal-02643377v1
	Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5 Olivier Grépinet , Aurore Rossignol , Valentin Loux , Helene Chiapello , Annie Gendrault Journal of Bacteriology, 2012, 194 (9), pp.2387-2388. ⟨10.1128/JB.00256-12⟩ Article dans une revue hal-03044203v1
	Genes under positive selection in a model plant pathogenic fungus, Botrytis Gabriela G. Aguileta , Juliette J. Lengellé , Helene H. Chiapello , Tatiana T. Giraud , Muriel Viaud Infection, Genetics and Evolution, 2012, 12 (05), pp.987-996. ⟨10.1016/j.meegid.2012.02.012⟩ Article dans une revue hal-01000313v1
	CompaGB: An open framework for genome browsers comparison Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Hélène Chiapello BMC Research Notes, 2011, 4, pp.133. ⟨10.1186/1756-0500-4-133⟩ Article dans une revue hal-02644023v1
	Robustness assessment of whole bacterial genome segmentations Hugo H. Devillers , Helene H. Chiapello , Sophie S. Schbath , Meriem M. El Karoui Journal of Computational Biology, 2011, 18 (9), pp.1155-1165. ⟨10.1089/cmb.2011.0115⟩ Article dans une revue hal-00999893v1
	Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach Chloé C. Ambroset , Maud Petit , Christian Brion , Isabelle Sanchez , Pierre Delobel G3, 2011, 1, pp.263-281. ⟨10.1534/G3.111.000422⟩ Article dans une revue hal-01487358v1
	Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3 Christine C. Delorme , Eric Guédon , Nicolas N. Pons , Corinne Cruaud , Arnaud A. Couloux Journal of Bacteriology, 2011, 193 (18), pp.5041-5042. ⟨10.1128/JB.05416-11⟩ Article dans une revue hal-01000176v1
	Assessing the robustness of complete bacterial genome segmentations Hugo Devillers , Hélène Chiapello , Sophie S. Schbath , Meriem El-Karoui Lecture Notes in Computer Science, 2010, 6398, pp.173-187. ⟨10.1007/978-3-642-16181-0_15⟩ Article dans une revue hal-02654924v1
	Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes Roxana Yockteng , Sylvain Marthey , Hélène Chiapello , Annie Gendrault , Michael E Hood BMC Genomics, 2009, 8 (1), pp.272. ⟨10.1186/1471-2164-8-272⟩ Article dans une revue hal-02333218v1
	Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths. Marie Touchon , Claire Hoede , Olivier Tenaillon , Valérie Barbe , Simon Baeriswyl PLoS Genetics, 2009, 5 (1), pp.e1000344. ⟨10.1371/journal.pgen.1000344⟩ Article dans une revue hal-00390293v1
	Que faire de nos biodéchets : production d'énergie ou production de compost ? État des connaissances et des techniques de traitement pour une valorisation optimale L. Bletzacker , Hélène Chiapello , Morgane Delorme , P. Ferrand , A. Henaut Ingénieries eau-agriculture-territoires, 2009, 57-58, pp.89-100 Article dans une revue hal-02592224v1
	Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum T. Giraud , R. Yockteng , Sylvain S. Marthey , Hélène Chiapello , Odile Jonot Molecular Ecology Resources, 2008, 8 (2), pp.387-392. ⟨10.1111/j.1471-8286.2007.01967.x⟩ Article dans une revue hal-02665569v1
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit 312, 2008, 9 (498), pp.on line Article dans une revue hal-00489678v1
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit 312, 2008, 9 (498), pp.on line Article dans une revue hal-00487406v1
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level Hélène Chiapello , Annie Gendrault-Jacquemard Gendrault , Christophe C. Caron , Jerome Blum , Marie Agnes M. A. Petit BMC Bioinformatics, 2008, 9 (498), pp.on line Article dans une revue hal-02655905v1
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit 312, 2008, 9 (498), pp.on line Article dans une revue hal-00490583v1
	FUNYBASE: the FUNGAL phYlogenomic database Sylvain Marthey , Gabriela Aguileta , Francois Rodolphe , Annie Gendrault , Tatiana Giraud BMC Bioinformatics, 2008, 9 (456), pp.1-10. ⟨10.1186/1471-2105-9-456⟩ Article dans une revue hal-01193636v1
	MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level Helene H. Chiapello , Annie A. Gendrault-Jacquemard , Christophe C. Caron , Jerome J. Blum , Marie Agnes M. A. Petit 312, 2008, 9 (498), pp.on line Article dans une revue hal-00490135v1
	Amplification biases: possible differences among deviating gene expressions. Séverine A Degrelle , Christelle Hennequet-Antier , Hélène Chiapello , Karine Piot-Kaminski , François Piumi BMC Genomics, 2008, 9 (46), pp.46. ⟨10.1186/1471-2164-9-46⟩ Article dans une revue cea-00307623v1
	Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling David Halpern , Helene Chiapello , Sophie Schbath , Stephane Robin , Christelle Hennequet-Antier PLoS Genetics, 2007, 3 (9), pp.1614-1621;e153. ⟨10.1371/journal.pgen.0030153⟩ Article dans une revue hal-01197542v1
	Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops Hélène Chiapello , Isabelle Bourgait , Frédéric Sourivong , Gaëlle Heuclin , Annie Gendrault-Jacquemard Gendrault BMC Bioinformatics, 2005, 6, pp.171. ⟨10.1186/1471-2105-6-171⟩ Article dans une revue hal-02683426v1
	AnovArray: a set of SAS macros for the analysis of variance of gene expression data Christelle Hennequet-Antier , Helene H. Chiapello , Karine Piot , Severine S. Degrelle , Isabelle Hue BMC Bioinformatics, 2005, 6, pp.150. ⟨10.1186/1471-2105-6-150⟩ Article dans une revue inserm-02440250v1
	Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations A. Louis , Hélène Chiapello , C. Fabry , E. Ollivier , A. Henaut Computers and Chemistry, 2002, 26 (5), pp.511-519. ⟨10.1016/S0097-8485(02)00011-6⟩ Article dans une revue hal-02676436v1
	Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes Béatrice Courtial , F. Feuerbach , S. Eberhard , Laurence Rohmer , Hélène Chiapello Molecular Genetics and Genomics, 2001, 265, pp.32-42 Article dans une revue hal-02680720v1
	Codon usage and gene function are related in sequences of Arabidopsis thaliana Hélène Chiapello , F. Lisacek , Michel M. Caboche , A. Henaut Gene, 1998, 209, pp.GC1-GC38 Article dans une revue hal-02689970v1
	Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs R. Cooke , Marc Raynal , M. Laudié , F. Grellet , Michel Delseny Plant Journal, 1996, 9 (1), pp.101-124 Article dans une revue hal-02688410v1
	An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana Hermanus Höfte , Thierry T. Desprez , J. Anselem , Hélène Chiapello , Michel M. Caboche Plant Journal, 1993, 4 (6), pp.1051-1061 Article dans une revue hal-02715837v1

	IFB/ELIXIR-FR, the french node of ELIXIR Anne-Françoise Adam-Blondon , Jacques van Helden , Gildas Le Corguillé , Christophe Blanchet , Hélène Chiapello ISMB ECCB 2023, International Society for Computational Biology, Jul 2023, Lyon, France Communication dans un congrès hal-04503051v1
	ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes Nathalie N. Leblond-Bourget , Julie Lao , Sophie Payot , Thomas Lacroix , Gérard Guédon Réunion du GDR3546 Eléments transposables, Dec 2022, Paris, France Communication dans un congrès hal-04232460v1
	Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment. Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin , Virginie Libante Réunion du GDR3546 Eléments transposables, Dec 2021, Paris, France Communication dans un congrès hal-03495840v1
	The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus. Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset 8th symposium on Antimicrobial Resistance in Animal and Environment, Jul 2019, Tours, France Communication dans un congrès hal-02974531v1
	A workflow to build a relevant and reduced bacterial dataset from NCBI Sandra Derozier , Sam Ah-Lone , Valentin Loux , Hélène Chiapello JOBIM : Journées Ouvertes Biologie Informatique Mathématiques, Jul 2019, Nantes, France Communication dans un congrès hal-02733948v1
	Evolution et co-évolution des petits ARNs régulateurs et des gènes codants chez les bactéries Hélène Chiapello ANSES - Séminaire DEBUG, Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES). FRA., Jun 2018, Toulouse, France Communication dans un congrès hal-02790775v1
	Integrating Tara oceans data sets using multiple kernels Jérôme J. Mariette , Helene H. Chiapello , Nathalie N. Villa-Vialaneix 15th European Conference on Computational Biology (ECCB 2016), Workshop "Recent Computational Advances in Metagenomics (RCAM)", Sep 2016, The Hague, Netherlands. pp.3 Communication dans un congrès hal-02792439v1
	Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade. Helene H. Chiapello , Ludovic Mallet Mallet , Cyprien C. Guerin , Gabriella G. Aguileta , Francois F. Rodolphe 27th Fungal Genetics Conference - Asilomar Conference Grounds,, Mar 2013, Asilomar, United States. p.76 Communication dans un congrès hal-01001510v1
	Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants Elisabeth E. Fournier , E E. Ortega-Abboud , Ludovic L. Mallet , Helene H. Chiapello , Cyprien C. Guerin 27th Fungal Genetics Conference, Mar 2013, Asilomar, United States. pp.281 Communication dans un congrès hal-01001508v1
	Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella Enteritidis Aurore Rossignol , Sylvie Roche , Isabelle Virlogeux-Payant , Olivier Grépinet , Nadia Abed I3S International Symposium Salmonella and Salmonellosis, Institut National de la Recherche Agronomique (INRA). FRA., May 2013, Saint Malo, France Communication dans un congrès hal-02749048v1
	Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects Jean-Claude Ogier , Sylvie Pages , Gaelle Bisch , Sebastien Carrere , Helene Chiapello 5. Congress of European Microbiologists (FEMS 2013), Jul 2013, Leipzig, Allemagne Communication dans un congrès hal-01837266v1
	The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae Ludovic Mallet Mallet , Cyprien C. Guerin , Veronique V. Martin , Enrique E. Ortega-Abboud , Jonathan J. Kreplak JOBIM-Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2012, Rennes, France. pp.379-380 Communication dans un congrès hal-01000934v1
	GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe E. Ortega-Abboud , Ludovic Mallet , Cyprien Guerin , Jonathan Kreplak , Joelle J. Amselem 9. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2012, Aussois, France. pp.82-82 Communication dans un congrès hal-01019005v1
	Alignement de génomes bactériens : méthodes, évaluation et exemples d'applications. Helene H. Chiapello Seminaire IRISA ( Symbiose ), Jan 2012, Rennes, France Communication dans un congrès hal-02806114v1
	Genomic diversity of 24 Propionibacterium freudenreichii 1 strains Hélène Falentin , Valentin Loux , Valérie Barbe , Amal Plaudet Hammani , Stéphanie-Marie Deutsch 6 Conference on Functional Genomics of Gram-positive Microorganisms 16 International Conference on Bacilli, Jun 2011, Montecatini, Italy Communication dans un congrès hal-01454328v1
	The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae Cyprien Guerin Guérin , Ludovic Mallet Mallet , Jonathan J. Kreplak , Joelle J. Amselem , Elisabeth E. Fournier Conférence EMBO, Nov 2011, Sant Feliu de Guixols, Spain. pp.1 Communication dans un congrès hal-01000676v1
	Evaluation et comparaison de logiciels de visualisation et d’exploration de génomes Helene H. Chiapello Seminaire Institut Pasteur, 2011, Paris, France Communication dans un congrès hal-02803608v1
	Comparaison et annotation de 9 génomes de Magnaporthe Helene H. Chiapello Réunion du groupe Champignons du REID, Nov 2011, Paris, France Communication dans un congrès hal-02802981v1
	Evaluating Genome Browsers Using a Software Qualification Method Evaluation Thomas Lacroix , Valentin Loux , Annie Gendrault-Jacquemard Gendrault , Jean-François Gibrat , Helene H. Chiapello JOBIM 2010, Sep 2010, Montpellier, France. pp.196 Communication dans un congrès hal-02751310v1
	GEMO: an innovative project on Evolutionary Genomics of Magnaporthe oryzae Elisabeth E. Fournier , Didier Tharreau , Thomas T. Kroj , Hélène Chiapello , Gabriela Aguileta 8. Rencontres de Phytopathologie-Mycologie de la Société Française de Phytopathologie (SFP), Jan 2010, Aussois, France Communication dans un congrès hal-02751005v1
	Web services for microbial genome annotation using data integration Célia Michotey , Ludovic Legrand , Helene H. Chiapello , Valentin Loux , Annie A. Gendrault-Jacquemard JOBIM 2010 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France Communication dans un congrès hal-02752226v1
	Origine des Spécificités Phénotypiques de la Levure œnologique a travers une Approche Génomique Cyprien Guerin Guérin , Helene H. Chiapello , Pierre P. Nicolas JOBIM 2010 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Sep 2010, Montpellier, France. pp.184 Communication dans un congrès hal-02751369v1
	Comparison and evolution of closely related genomes: methods and examples of applications in bacteria and fungi Helene H. Chiapello Séminaire du LIPM, Institut National de Recherche Agronomique (INRA). UMR Interactions Plantes - Microorganismes (0441)., Nov 2010, Toulouse, France Communication dans un congrès hal-02812455v1
	Assessing the robustness of complete bacterial genome Hugo Devillers , Hélène Chiapello , Sophie S. Schbath , Meriem El-Karoui RECOMB-CG 2010, Oct 2010, Ottawa, Canada. ⟨10.1007/978-3-642-16181-0_15⟩ Communication dans un congrès hal-02814833v1
	Improved sensitivity and reliability of anchor based genome alignment Raluca Uricaru , Célia Michotey , Laurent Noé , Helene H. Chiapello , Eric Rivals JOBIM - Journées Ouvertes en Biologie Informatique Mathématiques2009 - Nantes :, Jun 2009, Nantes, France. 259 p Communication dans un congrès hal-02751358v1
	Improved Sensitivity And Reliability Of Anchor Based Genome Alignment Raluca Uricaru , Célia Michotey , Laurent Noé , Hélène Chiapello , Eric Rivals JOBIM'09 : Journées Ouvertes en Biologie, Informatique et Mathématiques, Jun 2009, Nantes, France. pp.31-36 Communication dans un congrès lirmm-00407215v1
	How to measure the robustness of bacterial genome comparisons? Hugo Devillers , Helene Chiapello , Meriem El Karoui , Sophie Schbath 10èmes Journées Ouvertes en Biologie, Informatique et Mathématiques (JOBIM), Jun 2009, Nantes, France. pp.257 Communication dans un congrès hal-01204257v1

	Factors contributing to the prevalence of Integrative and Conjugative or Mobilizable Elements carrying antimicrobial resistance genes in Streptococcus suis Stéphanie Bougeard , Manon Dechêne-Tempier , Valentin Loux , Hélène Chiapello , Virginie Libante 5th International Workshop on Streptococcus suis, Jun 2023, Bangkok / Thailand, Thailand Poster de conférence hal-04232466v1
	Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository Baptiste Rousseau , Véronique Jamilloux , Thomas Denecker , Hélène Chiapello , Ariane Bize JOBIM 2023, Jun 2023, Nancy, France. Poster de conférence hal-04139284v1
	Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius. Sophie Payot , Julie Lao , Gérard Guédon , Thomas Lacroix , Florence Charron-Bourgoin 5th International Caparica Congress in Antibiotic Resistance (IC2AR 2022), Sep 2022, Caparica, Lisbon, Portugal Poster de conférence hal-04232454v1
	Precise detection of antibiotic resistance genes in chicken microbiota Anne-Carmen Sanchez , Guillaume Kon Kam King , Sylvie Baucheron , Fanny Calenge , Hélène Chiapello Journées Ouvertes en Biologie, Informatique et Mathématiques - JOBIM - colloque virtuel, Jul 2021, Paris, France. Poster de conférence hal-03337234v1
	Characterization of the genomic diversity and gene content of a lactobacilli collection Romane Junker , Victoria Chuat , Florence Valence , Michel-Yves Mistou , Hélène Chiapello JOBIM 2021, Jul 2021, Paris, France. Poster de conférence hal-03576928v1
	The IFB e-Learning Working Group Hélène Chiapello , Thomas Denecker , Gildas Le Corguillé , Pierre Poulain , Denis Puthier JOBIM (Journées Ouvertes en Biologie, Informatique et Mathématiques) 2021, Jul 2021, Paris, France. Poster de conférence hal-03296617v1
	Plateforme bioinformatique MIGALE Mouhamadou Ba , Damien Berry , David Christiany , Hélène Chiapello , Olivier Inizan Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jun 2020, Montpellier, France. 2020 Poster de conférence hal-04176782v1
	Plateforme bioinformatique MIGALE Hélène Chiapello , Sandra Dérozier , Olivier Inizan , Mahendra Mariadassou , Véronique Martin Journées Ouvertes de Biologie, Informatique et Mathématique (JOBIM), Jul 2019, Nantes, France. 2019 Poster de conférence hal-04176805v1
	The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus Charles Coluzzi , Julie Lao , Gérard Guédon , Marie-Dominique Devignes , Chloé Ambroset 4th International Workshop on Streptococcus suis, Jun 2019, Montréal, Canada. Poster de conférence hal-02974525v1
	Whole metagenome analysis with metagWGS Joanna Fourquet , Adeline Chaubet , Hélène Chiapello , Christine Gaspin , Marisa Haenni JOBIM 2019, Jul 2019, Nantes, France. , 2019 Poster de conférence hal-02788137v1
	Groupe de travail sur les Métiers de la Bioinformatique (MetBIF) Hélène Chiapello , Samuel Mondy , Morgane Thomas-Chollier JOBIM 2018, Jul 2018, Marseille, France Poster de conférence hal-03287534v1
	Towards an integrated approach for the annotation of ICEs and IMEs in bacterial genomes Julie Lao , Gérard Guédon , Thomas Lacroix , Nathalie N. Leblond-Bourget , Helene H. Chiapello JOBIM 2018, Jul 2018, Marseille, France Poster de conférence hal-01829606v1
	Host tropism and host-pathogen interplay of typhoidal Salmonella enterica Ludovic Mallet , Claire Hoede , Franck Cerruti , Annick Moisan , Christine Gaspin JOBIM 2017 - Journées Ouvertes en Biologie, Informatique et Mathématiques, Jul 2017, Lille, France. , 2017, Journées Ouvertes en Biologie, Informatique et Mathématiques. JOBIM 2017 Poster de conférence hal-01603254v1
	Investigating mycoplasma small non-coding RNAs using synthetic biology tools Iason Tsarmpopoulos , Camille Jollard , Géraldine Gourgues , Alain Blanchard , Isabelle Dutour Colloque Biologie synthétique et systémique, BioSynSys, Jun 2016, Bordeaux, France. 2016 Poster de conférence hal-02742260v1
	The GEMO project: Hitchhiking DNA in Magnaporthe oryzae Ludovic Mallet , Cyprien Guerin Guérin , Joelle J. Amselem , Elisabeth E. Fournier , Helene H. Chiapello JOBIM 2015. Meeting of working Group Medicago sativa, Jul 2015, Clermont-Ferrand, France. , 1123 p., 2015 Poster de conférence hal-02801084v1
	Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Hélène Chiapello , Amal Hammami 20. Colloque du Club des Bactéries Lactiques, Jun 2015, Lille, France. , 2015 Poster de conférence hal-01170054v1
	Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii Valentin Loux , Mahendra Mariadassou , Sintia Almeida da Silva , Helene Chiapello , Amal Hammami JOBIM 16. Journées Ouvertes de Biologie, Informatique et Mathématiques, Jul 2015, Clermont-Ferrand, France. , 2015, ⟨10.1186/s12864-015-1467-7⟩ Poster de conférence hal-01209851v1
	Comparative analysis of transposable elements in the Magnaporthe oryzae/grisea clade Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc Henri Lebrun , Elisabeth Fournier PAG - Plant Animal Genome,, Jan 2013, San Diego, United States. 2013 Poster de conférence hal-01190539v1
	IGO, Integration from Genomes to Organisms Sandra S. Derozier , Helene H. Chiapello , Thomas Lacroix , Cyprien Guerin Guérin , Valentin Loux JOBIM 2013, Jul 2013, Toulouse, France. , pp.246, 2013, JOBIM TOULOUSE 2013 - RÉSUMÉS COURTS (affiches) Poster de conférence hal-02746442v1
	Distribution and evolution of transposable elements in the Magnaporthe oryzae/grisea clade Joelle J. Amselem , Ludovic Mallet , Helene Chiapello , Cyprien Guerin , Marc-Henri Lebrun 27. Fungal Genetics Conference, Mar 2013, Asilomar Conference Grounds, United States. 2013 Poster de conférence hal-01190331v1
	Genome evolution of fungal pathoens from Magnaporthe oryzae/grisea clade Marc-Henri M.-H. Lebrun , Ludovic Mallet , Cyprien Guerin , Hélène Chiapello , Enrique Ortega-Abboud XV International congress on Molecular plant-microbe interactions, 29 juillet au 02 août 2012,, Jul 2012, Kyoto, Japan. , 2012, Poster session 21 - Structural biology Poster de conférence hal-02748600v1

	FAIR training handbook Frédéric de Lamotte , Patricia M. Palagi , Hélène Chiapello , Melissa Burke , Allegra Via 2023 Ouvrages hal-04180277v1
	SPiD: a subtilis protein interaction database Mark Hoebeke , Hélène Chiapello , Philippe Noirot , Philippe Bessières 5 p., 2000 Ouvrages hal-02839427v1

	Banques et bases de données en biologie Hélène Chiapello , Alexandra Louis Bio-Informatique - principes d'utilisation des outils, Editions Quae, 2010 Chapitre d'ouvrage hal-02823616v1
	Gene prediction Pierre P. Nicolas , Hélène Chiapello Functional plant genomics, Science Publishers, 2007, 978-1-57808-506-4 Chapitre d'ouvrage hal-02815636v1
	Databases in biology Hélène Chiapello Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4 Chapitre d'ouvrage hal-02814265v1
	Introduction to bioinformatics Hélène Chiapello , Francois F. Rodolphe Functional Plant Genomics, Science Publishers, 2007, 978-1-57808-506-4 Chapitre d'ouvrage hal-02820083v1
	Annotation and databases : status and prospects Mark M. Hoebeke , Hélène Chiapello , Jean-François Gibrat , Philippe Bessières , Jean Garnier Database annotation in molecular biology : principles and practice, Wiley, 2004, 978-0-470-85681-9 Chapitre d'ouvrage hal-02832226v1
	Prédiction de gènes P. Nicolas , Hélène Chiapello La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5 Chapitre d'ouvrage hal-02830852v1
	Banques et bases de données en biologie Hélène Chiapello La génomique en biologie végétale, INRA Editions, 2004, Science Update, 2-7380-1167-5 Chapitre d'ouvrage hal-02832814v1

	ICEscreen Hélène Chiapello , Charles Coluzzi , Nathalie N. Leblond-Bourget , Thomas Lacroix , Julie Lao 2022, ⟨swh:1:dir:39855033173eb6e930cc148edef34905b34e8459;origin=https://hal.archives-ouvertes.fr/hal-03610196;visit=swh:1:snp:5f80897225e2e86613b5b10e7bdd103858426c8a;anchor=swh:1:rel:633a56d28c36ec614cb05ae1ab0494639c7e84af;path=/⟩ Logiciel hal-03610196v2

Hélène Chiapello

Présentation

Publications

Comparative Genome Analysis of Enterococcus cecorum Reveals Intercontinental Spread of a Lineage of Clinical Poultry Isolates

ICEscreen: a tool to detect Firmicute ICEs and IMEs, isolated or enclosed in composite structures

EMERGEN-BioInfo The digital platform for the French SARS-CoV-2 genomic surveillance and research program

Gene co-expression network analysis of the human gut commensal bacterium Faecalibacterium prausnitzii in R-Shiny

Intracellular Salmonella Paratyphi A is motile and differs in the expression of flagella-chemotaxis, SPI-1 and carbon utilization pathways in comparison to intracellular S. Typhimurium

Abundance, Diversity and Role of ICEs and IMEs in the Adaptation of Streptococcus salivarius to the Environment

Unraveling the evolution and coevolution of small regulatory RNAs and coding genes in Listeria

Unprecedented large inverted repeats at the replication terminus of circular bacterial chromosomes suggest a novel mode of chromosome rescue

Listeriomics : an Interactive Web Platform for Systems Biology of Listeria

PhylOligo: a package to identify contaminant or untargeted organism sequences in genome assemblies

Genome-wide investigation of mRNA lifetime determinants in Escherichia coli cells cultured at different growth rates

Deciphering genome content and evolutionary relationships of isolates from the fungus Magnaporthe oryzae attacking different host plants

Mutations and genomic islands can explain the strain dependency of sugar utilization in 21 strains of Propionibacterium freudenreichii

YOC, A new strategy for pairwise alignment of collinear genomes

Attenuated virulence and genomic reductive evolution in the entomopathogenic bacterial symbiont species, Xenorhabdus poinarii

Genome sequence of the persistent Salmonella enterica subsp enterica Serotype Senftenberg Strain SS209

Genome Sequence of the Invasive Salmonella enterica subsp. enterica Serotype Enteritidis Strain LA5

Genes under positive selection in a model plant pathogenic fungus, Botrytis

CompaGB: An open framework for genome browsers comparison

Robustness assessment of whole bacterial genome segmentations

Deciphering the molecular basis of wine yeast fermentation traits using a combined genetic and genomic approach

Complete genome sequence of the clinical Streptococcus salivarius strain CCHSS3

Assessing the robustness of complete bacterial genome segmentations

Expressed sequences tags of the anther smut fungus, Microbotryum violaceum, identify mating and pathogenicity genes

Organised genome dynamics in the Escherichia coli species results in highly diverse adaptive paths.

Que faire de nos biodéchets : production d'énergie ou production de compost ? État des connaissances et des techniques de traitement pour une valorisation optimale

Isolation of 60 polymorphic microsatellite loci in EST libraries of four sibling species of the phytopathogenic fungal complex Microbotryum

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

FUNYBASE: the FUNGAL phYlogenomic database

MOSAIC: an online database dedicated to the comparative genomics of bacterial strains at the intra-species level

Amplification biases: possible differences among deviating gene expressions.

Identification of DNA Motifs Implicated in Maintenance of Bacterial Core Genomes by Predictive Modeling

Systematic determination of the mosaic structure of bacterial genomes: species backbone versus strain-specific loops

AnovArray: a set of SAS macros for the analysis of variance of gene expression data

Deciphering Arabidopsis thaliana gene neighborhoods through bibliographic co-citations

Tnt1 transposition events are induced by in vitro transformation of Arabidopsis thaliana, and transposed copies integrate into genes

Codon usage and gene function are related in sequences of Arabidopsis thaliana

Further progress towards a catalogue of all Arabidopsis genes: analysis of a set of 5000 non-redundant ESTs

An inventory of 1152 expressed sequence tags obtained by partial sequencing of cDNAs from Arabidopsis thaliana

IFB/ELIXIR-FR, the french node of ELIXIR

ICEscreen: a valuable tool for automatic detection of ICEs and IMEs in Firmicutes

Mobile Genetic Elements transferring by conjugation in the human commensal bacterium Streptococcus salivarius: abundance, diversity and role in the adaptation to environment.

The ICE/IME Finder approach and its application to ICE/IME annotation in Streptococcus.

A workflow to build a relevant and reduced bacterial dataset from NCBI

Evolution et co-évolution des petits ARNs régulateurs et des gènes codants chez les bactéries

Integrating Tara oceans data sets using multiple kernels

Genome evolution of fungal pathogens from the Magnaporthe oryzae/grisea clade.

Evolution of the pan-secretome among lineages of Magnaporthe oryzae attacking different host-plants

Deciphering why Salmonella Gallinarum is less invasive in vitro than Salmonella Enteritidis

Genomic comparison within Xenorhabdus genus: X. poinarii species characterized by a small genome and attenuated virulence toward insects

The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

GEMO project: Genetic bases of pathogenicity and host specificity analyzed through comparative and evolutionary genomics in the model fungus Magnaporthe

Alignement de génomes bactériens : méthodes, évaluation et exemples d'applications.

Genomic diversity of 24 Propionibacterium freudenreichii 1 strains

The GEMO project: Analysis and comparison of genomes of the fungal pathogen Magnaporthe oryzae

Evaluation et comparaison de logiciels de visualisation et d’exploration de génomes

Comparaison et annotation de 9 génomes de Magnaporthe

Evaluating Genome Browsers Using a Software Qualification Method Evaluation

GEMO: an innovative project on Evolutionary Genomics of Magnaporthe oryzae

Web services for microbial genome annotation using data integration

Origine des Spécificités Phénotypiques de la Levure œnologique a travers une Approche Génomique

Comparison and evolution of closely related genomes: methods and examples of applications in bacteria and fungi

Assessing the robustness of complete bacterial genome

Improved sensitivity and reliability of anchor based genome alignment

Improved Sensitivity And Reliability Of Anchor Based Genome Alignment

How to measure the robustness of bacterial genome comparisons?

Factors contributing to the prevalence of Integrative and Conjugative or Mobilizable Elements carrying antimicrobial resistance genes in Streptococcus suis

Design and production of a plug-in tool facilitating the submission of microbial meta-omics data to an international repository

Abundance and diversity of Mobile Genetic Elements carrying antibiotic resistance genes and transferring by conjugation in the human commensal bacterium Streptococcus salivarius.

Precise detection of antibiotic resistance genes in chicken microbiota

Characterization of the genomic diversity and gene content of a lactobacilli collection

The IFB e-Learning Working Group

Plateforme bioinformatique MIGALE

Plateforme bioinformatique MIGALE