Harold Duruflé

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harold-durufle
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RESEARCH EXPERIENCE =================== 2021 **Research Scientist: Integrative genomic prediction of complex phenotypes using system biology approach** **-** Integrated Biology for the Development of Tree and Forest Diversity Laboratory, UMR INRAE/ONF 0588 2017 **PostDoc position: Develop the systems biology approach within the [SUNRISE project](https://www6.inrae.fr/sunrise/What-is-SUNRISE) ; 3 years** \- Laboratory of Plant-Microbe Interactions, UMR 2594/441 CNRS/INRA, Toulouse, France \- Team: Sunflower Genetics and Genomics (N. Langlade) 2014 **PhD: “Production and treatment of heterogeneous Omics data in order to study the cell wall plasticity in *A. thaliana* ecotypes living at contrasted altitudinal level”; 3 years** \- Plant Science Research Laboratory, UMR 5546 UPS/CNRS, Toulouse, France (Pr C. Dunand) \- Toulouse Mathematics Institute, France (Pr P. Besse) 2014 **Crop ontology curator. Bioversity International, Montpellier Office (France); 10 months** Team: Crop Ontology project of the Generation Challenge Programme (E. Arnaud) Internship: 2013 **Station Biologique de Roscoff, Marine Plants and Biomolecules, UMR 7139 UPMC/CNRS; 6 months** 2012 **Laboratory “Ecosystems, Biodiversity, Evolution”, UMR 6553 Rennes 1 University/CNRS; 3 months** 2011 **Laboratory of Plants Ecophysiological Responses to Environmental Stress, INRA Montpellier; 6 months** 2010 **Laboratory “Ecology Systematic Evolution”, Paris-Sud 11 University; 4 months** Team: Photosynthesis, environment and adaptation (P. Streb & G. Cornic) 2004-2011 **Joseph Fourier Alpine Station, Alpine Botanical garden of Lautaret; Internship 2 months / year** EDUCATION ========== 2013 **M.Sc. Degree: Integrative plant biology: Gene, Plant, Agro-system** 6 collaborating universities & Agrocampus Ouest (France) *Major: Physiology/Metabolism and Eco-Physiology.* 2011 **BSc Degree: Functional Plant Biology** Montpellier 2 University (France) TEACHING and MENTORING ====================== **Supervision:** PhD: **2021-2022** - Abdou Rahmane Wade. Improved genome-based phenotypic predictions with a systems biology approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Vincent Segura) **2022-on going** - Alexandre Duplan. Improvement of pan-genomic knowledge and prediction of complex phenotypes by an integrative multi-omics approach. (Co-doctoral advisor: Leopoldo Sanchez Rodriguez & Stephane Maury) PostDoc: **2022** - Xabi Cazenave : Postdoc: 11 months Internship: **2023** - Alae-Eddine LEKCHIRI, Master degree, Rennes University **2023** - Maya Doureradjam. Master degree, Montpellier University (France): 6 months **2022** - Julien Desforges. Master degree, Orleans University (France): 4 months **2018** - Claire Espérou. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months **2017** - Sébastien Viudes. Master degree, Toulouse University (France): 2 months **2016** - Merwann Selmani. 4th year in mathematics and modelling engineering school of INSA, Toulouse (France): 3 months **2015** - Duchesse Lacour Mbadinga Mbadinga. BSc. Degree, Toulouse University (France): 6 months Others: **2019** - Caroline Laffray. Engineer: 1 year **2018** - Charlotte Penouilh-Suzette. Engineer: 6 months **Teaching:** **2015 - 2017**: Toulouse University, biostatistics and biophysics at BSc. Degree, 70 h per year. PROFESSIONAL SERVICES ===================== International meeting organization committees of: \- The [IX European Plant Science Retreat](http://epsr.net/), 20 - 23 June **2017**, Toulouse (France) \- The [Workshop on Multivariate data integration using the R package mixOmics](http://mixomics.org/2016/05/12-14-sept-toulouse/), 12 - 14 September **2016**, Toulouse (France) \- The [Workshop on Crop Ontology and Phenotyping Data Interoperability](https://sites.google.com/a/cgxchange.org/cropontologycommunity/), 31 March - 4 April **2014**, Montpellier (France‎)

Publications

	Multi-omics Data Integration in the Context of Plant Abiotic Stress Signaling Harold Duruflé , Sébastien Déjean Plant Abiotic Stress Signaling, 2642, Springer US, pp.295-318, 2023, Methods in Molecular Biology, ⟨10.1007/978-1-0716-3044-0_16⟩ Chapitre d'ouvrage hal-04040408v1

	Genetic control of abiotic stress-related specialized metabolites in sunflower Marco Moroldo , Nicolas Blanchet , Harold Duruflé , Stéphane Bernillon , Thierry Berton BMC Genomics, 2024, 25 (1), pp.199. ⟨10.1186/s12864-024-10104-9⟩ Article dans une revue hal-04468891v1
	Comprehensive Organ-Specific Profiling of Douglas Fir (Pseudotsuga menziesii) Proteome Caroline Teyssier , Odile Rogier , Stéphane Claverol , Florian Gautier , Marie-Anne Lelu-Walter Biomolecules, 2023, 13 (9), pp.1400. ⟨10.3390/biom13091400⟩ Article dans une revue hal-04209576v1
	Sunflower Hybrids and Inbred Lines Adopt Different Physiological Strategies and Proteome Responses to Cope with Water Deficit Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Adeline Chaubet , Alexandra Duhnen Biomolecules, 2023, 13 (7), pp.1110. ⟨10.3390/biom13071110⟩ Article dans une revue hal-04161450v1
	Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals Lise Pomiès , Celine Brouard , Harold Duruflé , Élise Maigné , Clément Carré Bioinformatics, 2022, 38 (17), pp.4127-4134. ⟨10.1093/bioinformatics/btac445⟩ Article dans une revue hal-03776333v1
	eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction Abdou Rahmane Wade , Harold Duruflé , Leopoldo Sanchez , Vincent Segura BMC Genomics, 2022, 23 (1), pp.476. ⟨10.1186/s12864-022-08690-7⟩ Article dans une revue hal-04031548v1
	Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit Thierry Berton , Stéphane Bernillon , Olivier Fernandez , Harold Duruflé , Amélie Flandin OCL Oilseeds and fats crops and lipids, 2021, 28, 42 - 6 p. ⟨10.1051/ocl/2021029⟩ Article dans une revue hal-03321074v1
	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas Langlade OCL Oilseeds and fats crops and lipids, 2021, 28, ⟨10.1051/ocl/2020074⟩ Article dans une revue hal-03139476v1
	A powerful framework for an integrative study with heterogeneous omics data: from univariate statistics to multi-block analysis Harold Duruflé , Merwann Selmani , Philippe Ranocha , Elisabeth Jamet , Christophe Dunand Briefings in Bioinformatics, 2021, 22 (3), pp.bbaa166. ⟨10.1093/bib/bbaa166⟩ Article dans une revue hal-02921927v3
	An integrative Study Showing the Adaptation to Sub-Optimal Growth Conditions of Natural Populations of Arabidopsis thaliana: A Focus on Cell Wall Changes Harold Duruflé , Philippe Ranocha , Thierry Balliau , Michel Zivy , Cécile Albenne Cells, 2020, 9 (10), pp.2249. ⟨10.3390/cells9102249⟩ Article dans une revue hal-02965604v1
	RNA expression dataset of 384 sunflower hybrids in field condition Charlotte Penouilh-Suzette , Lise Pomies , Harold Duruflé , Nicolas Blanchet , Fanny Bonnafous OCL Oilseeds and fats crops and lipids, 2020, 27, pp.36. ⟨10.1051/ocl/2020027⟩ Article dans une revue hal-02912579v1
	Données transcriptomiques de feuilles de huit lignées de tournesol et de leurs 16 hybrides soumis à un stress hydrique Louise Gody , Harold Duruflé , Nicolas Blanchet , Clément Carré , Ludovic Legrand OCL Oilseeds and fats crops and lipids, 2020, 27, pp.48. ⟨10.1051/ocl/2020044⟩ Article dans une revue hal-02974900v1
	Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature Harold Duruflé , Philippe Ranocha , Thierry Balliau , Christophe Dunand , Elisabeth Jamet Data in Brief, 2019, 27, pp.104581. ⟨10.1016/j.dib.2019.104581⟩ Article dans une revue hal-02938744v1
	Phenotyping and cell wall polysaccharide composition dataset of five arabidopsis ecotypes grown at optimal or sub-optimal temperatures Harold Duruflé , Cécile Albenne , Elisabeth Jamet , Christophe Dunand Data in Brief, 2019, 25, pp.104318. ⟨10.1016/j.dib.2019.104318⟩ Article dans une revue hal-03121670v1
	Phenotypic Trait Variation as a Response to Altitude-Related Constraints in Arabidopsis Populations Harold Duruflé , Philippe Ranocha , Duchesse Lacour Mbadinga Mbadinga , Sébastien Dejean , Maxime Bonhomme Frontiers in Plant Science, 2019, 10, pp.430. ⟨10.3389/fpls.2019.00430⟩ Article dans une revue hal-02115698v1
	Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers Olivier Fernandez , Maria Urrutia , Thierry Berton , Stéphane Bernillon , Catherine Deborde Metabolomics, 2019, 15 (4), pp.56. ⟨10.1007/s11306-019-1515-4⟩ Article dans une revue hal-02487236v1
	Data describing the eco-physiological responses of twenty-four sunflower genotypes to water deficit Nicolas Blanchet , Pierre Casadebaig , Philippe Debaeke , Harold Duruflé , Louise Gody Data in Brief, 2018, 21, pp.1296-1301. ⟨10.1016/j.dib.2018.10.045⟩ Article dans une revue hal-02625452v1
	Cell wall proteome analysis of Arabidopsis thaliana mature stems Harold Duruflé , Hélène San Clemente , Thierry Balliau , Michel Zivy , Christophe Dunand Proteomics, 2017, 17 (8), pp.1-5. ⟨10.1002/pmic.201600449⟩ Article dans une revue hal-01606770v1
	Proline hydroxylation in cell wall proteins: is it yet possible to define rules? Harold Duruflé , Vincent Hervé , Thierry Balliau , Michel Zivy , Christophe Dunand Frontiers in Plant Science, 2017, 8, ⟨10.3389/fpls.2017.01802⟩ Article dans une revue hal-02620851v1
	Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions Harold Duruflé , Vincent Hervé , Philippe Ranocha , Thierry Balliau , Michel Zivy Plant Science, 2017, 263, pp.183-193. ⟨10.1016/j.plantsci.2017.07.015⟩ Article dans une revue hal-03121655v1
	Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata Andrés A Ritter , Léa Cabioch , Loraine A Brillet-Guéguen , Erwan A Corre , Audrey A Cosse PLoS ONE, 2017, 12 (3), pp.e0173315. ⟨10.1371/journal.pone.0173315.s011⟩ Article dans une revue hal-01587420v1
	An enlarged cell wall proteome of Arabidopsis thaliana rosettes. Vincent Hervé , Harold Duruflé , Hélène San Clemente , Cécile Albenne , Thierry Balliau Proteomics, 2016, 16 (24), pp.3183-3187. ⟨10.1002/pmic.201600290⟩ Article dans une revue pasteur-01421109v1

	Integration of omics data: example of analysis in a plant biology context Harold Duruflé Journées du Groupe Vigne de BAP et ses amis, Nov 2023, Colmar, France Communication dans un congrès hal-04300759v1
	Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower. Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Brigitte Mangin Omics Days, Feb 2020, Montpellier, France Communication dans un congrès hal-03509300v1
	Contribution of an integrative study to the understanding of plant adaptation to their environment: A focus on plant cell walls. Harold Duruflé , Sébastien Dejean Cell Wall Days, Oct 2020, Toulouse, France Communication dans un congrès hal-03509280v1
	Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , Adeline Chaubet Green Proteome, Jun 2019, Paris, France Communication dans un congrès hal-03509317v1
	Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Melisande Blein-Nicolas , A Chaubet Plant and Animal Genome XXVII, Jan 2019, San Diego, United States Communication dans un congrès hal-02391988v1
	Introduction to Ontology Semantics & tools for data annotation Harold Duruflé 2d Rencontres du réseau SPE (INRA), Mar 2019, Toulouse, France Communication dans un congrès hal-03511777v1
	Arabidopsis thaliana as a model plant to study acclimation to sub-optimal growth conditions: An integrative study combining omics approaches reveals the importance of the cell wall. Harold Duruflé , Vincent Hervé , Thierry Balliau , Michel Zivy , Sébastien Dejean INPPO World Congress, Sep 2018, Padoue, Italy Communication dans un congrès hal-03509374v1
	Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits. Harold Duruflé , Thierry Balliau , Melisande Blein-Nicolas , Nicolas Blanchet , Adeline Chaubet INPPO World Congress, Sep 2018, Padoue, Italy Communication dans un congrès hal-03509356v1
	Cell wall adaptation to sub-optimal growth conditions of natural population of Arabidopsis. Harold Duruflé , Philippe Ranocha , Sébastien Dejean , Thierry Balliau , Michel Zivy 11es Journées du Réseau Français des Parois, Jun 2017, Orléans, France Communication dans un congrès hal-03509390v1
	Analysis and integration of heterogeneous data from response to low temperature condition of two Arabidopsis thaliana ecotypes Harold Duruflé , Vincent Hervé , Philippe Ranocha , Cécile Albenne , Sébastien Dejean COST FA1306, Workgroup 2, Feb 2016, Versailles, France Communication dans un congrès hal-03509455v1
	Harmonizing trait classes in the crop ontology & aligning with plant and trait ontologies Harold Duruflé , Marie-Angelique Laporte , Matteis Lucas , Elizabeth Arnaud Workshop on Crop Ontology and Phenotyping Data Interoperability, Mar 2014, Montpellier, France Communication dans un congrès hal-03509472v1

	What epigenetics can bring to (plant) physiologists and ecologists in a climate change context Alexandre Duplan , Régis Fichot , Mamadou Dia Sow , Alain Delaunay , Isabelle Le Jan Biotechnocentre, Oct 2023, Nouan-le-Fuzelier, France. Poster de conférence hal-04283904v1
	Etude des variations géographiques, génétiques et temporelles de la phénologie de floraison chez le peuplier noir Xabi Cazenave , Véronique Jorge , Marc Villar , Harold Duruflé Premières journées doctorales de la forêt, Apr 2023, Blois, France. Poster de conférence hal-04071607v1
	Trees short-time and inter-annual epigenetic somatic memories in response to drought-rewatering cycles Alexandre Duplan , Régis Fichot , Mamadou Dia Sow , Alain Delaunay , Isabelle Lejan 14th International Conference of the French Society of Plant Biology, Jul 2023, Marseille, France. Poster de conférence hal-04157492v1
	eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction Abdou Rahmane Wade , Harold Duruflé , Leopoldo Sanchez , Vincent Segura B4EST International Conference: Managing Forest Genetic Resources (FGR) for an Uncertain Future, Jun 2022, Lisboa, Portugal. 2022 Poster de conférence hal-04540839v1
	Exploration du génome du peuplier noir : identification de variations structurales Romane Guilbaud , Véronique Jorge , Odile Rogier , Leopoldo Sanchez Rodriguez , Patricia Faivre-Rampant 1. colloque INRAE Genomics, May 2022, Orléans, France. Poster de conférence hal-03937688v1
	Short reads et trios, un duo gagnant pour l'identification de variations structurales chez le peuplier noir Romane Guilbaud , Odile Rogier , Véronique Jorge , Harold Duruflé , Leopoldo Sanchez Rodriguez Mini congrès, Jun 2022, Evry, France Poster de conférence hal-03937654v1
	An integrative systems biology approach to study the genetic variability and the molecular involved in sunflower heterosis responses to drought stress Harold Duruflé GisBV symposium inter-PIA, Oct 2019, Paris, France Poster de conférence hal-03511754v1
	A systems biology approach to study the genetic variability of proteome responses to water deficit in sunflower Harold Duruflé , Thierry Balliau , Nicolas Blanchet , Mélisande Blein-Nicolas , Adeline Chaubet First International Plant Systems Biology meeting, Sep 2018, Roscoff, France. Poster de conférence hal-03511745v1
	Phenotypic trait variation in genetically distincts Arabidopsis thaliana populations from the Pyrenees Mountains highlight acclimation to environmental constraints. Harold Duruflé , Philippe Ranocha , Duchesse Lacour Mbadinga Mbadinga , Sébastien Déjean , Maxime Bonhomme 9th European Plant Science Retreat, Mar 2017, Toulouse, France. , 1p Poster de conférence hal-03511709v1
	Analysis and integration of heterogeneous data from response to low temperature condition of two Arabidopsis thaliana ecotypes Harold Duruflé , Vincent Hervé , Philippe Ranocha , Cécile Albenne , Sébastien Déjean Day of the Doctoral School SEVAB, Mar 2016, Toulouse, France Poster de conférence hal-03511731v1
	Production and treatment of heterogeneous omics data in order to study the cell wall plasticity in various Pyrenean altitudinal A. thaliana ecotypes Harold Duruflé , Vincent Hervé , Philippe Ranocha , Cécile Albenne , Josiane Chourré Day of the Doctoral School SEVAB, Mar 2015, Toulouse, France Poster de conférence hal-03511721v1

	Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra) Mamadou Dia Sow , Odile Rogier , Isabelle Lesur , Christian Daviaud , Emile Mardoc 2023 Pré-publication, Document de travail hal-04170410v1
	eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction Abdou Rahmane Wade , Harold Duruflé , Leopoldo Sanchez , Vincent Segura 2022 Pré-publication, Document de travail hal-03509327v1
	Proteomic data from leaves of twenty-four sunflower genotypes under water deficit Thierry Balliau , Harold Duruflé , Nicolas Blanchet , Melisande Blein-Nicolas , Nicolas B. Langlade 2020 Pré-publication, Document de travail hal-02544815v1

	Production et traitement de données omiques hétérogènes en vue de l'étude de la plasticité de la paroi chez des écotypes de la plante modèle Arabidopsis thaliana provenant d'altitudes contrastées Harold Duruflé Biologie végétale. Université Paul Sabatier - Toulouse III, 2017. Français. ⟨NNT : 2017TOU30219⟩ Thèse tel-02004363v1

Harold Duruflé

Présentation

Publications

Multi-omics Data Integration in the Context of Plant Abiotic Stress Signaling

Genetic control of abiotic stress-related specialized metabolites in sunflower

Comprehensive Organ-Specific Profiling of Douglas Fir (Pseudotsuga menziesii) Proteome

Sunflower Hybrids and Inbred Lines Adopt Different Physiological Strategies and Proteome Responses to Cope with Water Deficit

Gene regulatory network inference methodology for genomic and transcriptomic data acquired in genetically related heterozygote individuals

eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction

Leaf metabolomic data of eight sunflower lines and their sixteen hybrids under water deficit

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

A powerful framework for an integrative study with heterogeneous omics data: from univariate statistics to multi-block analysis

An integrative Study Showing the Adaptation to Sub-Optimal Growth Conditions of Natural Populations of Arabidopsis thaliana: A Focus on Cell Wall Changes

RNA expression dataset of 384 sunflower hybrids in field condition

Données transcriptomiques de feuilles de huit lignées de tournesol et de leurs 16 hybrides soumis à un stress hydrique

Transcriptomic and cell wall proteomic datasets of rosettes and floral stems from five Arabidopsis thaliana ecotypes grown at optimal or sub-optimal temperature

Phenotyping and cell wall polysaccharide composition dataset of five arabidopsis ecotypes grown at optimal or sub-optimal temperatures

Phenotypic Trait Variation as a Response to Altitude-Related Constraints in Arabidopsis Populations

Metabolomic characterization of sunflower leaf allows discriminating genotype groups or stress levels with a minimal set of metabolic markers

Data describing the eco-physiological responses of twenty-four sunflower genotypes to water deficit

Cell wall proteome analysis of Arabidopsis thaliana mature stems

Proline hydroxylation in cell wall proteins: is it yet possible to define rules?

Cell wall modifications of two Arabidopsis thaliana ecotypes, Col and Sha, in response to sub-optimal growth conditions

Herbivore-induced chemical and molecular responses of the kelps Laminaria digitata and Lessonia spicata

An enlarged cell wall proteome of Arabidopsis thaliana rosettes.

Integration of omics data: example of analysis in a plant biology context

Multivariate analyses of heterogeneous omics data highlights the emergence of novel molecular and physiological strategies of drought response in sunflower.

Contribution of an integrative study to the understanding of plant adaptation to their environment: A focus on plant cell walls.

Sunflower hybrids and inbred lines adopt different molecular and physiological strategies to respond to water deficit

Statistical learning on heterogeneous omics data highlights the molecular basis of heterosis of drought response in sunflower

Introduction to Ontology Semantics & tools for data annotation

Arabidopsis thaliana as a model plant to study acclimation to sub-optimal growth conditions: An integrative study combining omics approaches reveals the importance of the cell wall.

Proteome responses to water deficit in sunflower: genetic variability, heterosis and links with phenotypic traits.

Cell wall adaptation to sub-optimal growth conditions of natural population of Arabidopsis.

Analysis and integration of heterogeneous data from response to low temperature condition of two Arabidopsis thaliana ecotypes

Harmonizing trait classes in the crop ontology & aligning with plant and trait ontologies

What epigenetics can bring to (plant) physiologists and ecologists in a climate change context

Etude des variations géographiques, génétiques et temporelles de la phénologie de floraison chez le peuplier noir

Trees short-time and inter-annual epigenetic somatic memories in response to drought-rewatering cycles

eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction

Exploration du génome du peuplier noir : identification de variations structurales

Short reads et trios, un duo gagnant pour l'identification de variations structurales chez le peuplier noir

An integrative systems biology approach to study the genetic variability and the molecular involved in sunflower heterosis responses to drought stress

A systems biology approach to study the genetic variability of proteome responses to water deficit in sunflower

Phenotypic trait variation in genetically distincts Arabidopsis thaliana populations from the Pyrenees Mountains highlight acclimation to environmental constraints.

Analysis and integration of heterogeneous data from response to low temperature condition of two Arabidopsis thaliana ecotypes

Production and treatment of heterogeneous omics data in order to study the cell wall plasticity in various Pyrenean altitudinal A. thaliana ecotypes

Epigenetic Variation in Tree Evolution: a case study in black poplar (Populus nigra)

eQTLs are key players in the integration of genomic and transcriptomic data for phenotype prediction

Proteomic data from leaves of twenty-four sunflower genotypes under water deficit

Production et traitement de données omiques hétérogènes en vue de l'étude de la plasticité de la paroi chez des écotypes de la plante modèle Arabidopsis thaliana provenant d'altitudes contrastées