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Tree leaves extraction in natural images: Comparative study of pre-processing tools and segmentation methods

 Manuel Grand-Brochier , Antoine Vacavant , Guillaume Cerutti , Camille Kurtz , Jonathan Weber , et al.
IEEE Transactions on Image Processing, 2015, 24 (5), pp.1549-1560. ⟨10.1109/TIP.2015.2400214⟩
Article dans une revue hal-01176699v1

Bark Recognition to Improve Leaf-based Classification in Didactic Tree Species Identification

 Sarah Bertrand , Guillaume Cerutti , Laure Tougne
VISAPP 2017 - 12th International Conference on Computer Vision Theory and Applications, Feb 2017, Porto, Portugal
Communication dans un congrès hal-01486591v1

Segmentation Algorithm on Smartphone Dual Camera: Application to Plant Organs in the Wild

 Sarah Bertrand , Guillaume Cerutti , Laure Tougne
10th International Conference on Machine Vision, Nov 2017, Vienna, Austria. ⟨10.1117/12.2314731⟩
Communication dans un congrès hal-01675655v1

Comparative Study of Segmentation Methods for Tree Leaves Extraction

 Manuel Grand-Brochier , Antoine Vacavant , Guillaume Cerutti , Kevin Bianchi , Laure Tougne
ACM ICVS, Workshop VIGTA (International Workshop on Video and Image Ground Truth in computer vision Applications), Jul 2013, St Petersbourg, Russia. pp.1-10, ⟨10.1145/2501105.2501109⟩
Communication dans un congrès hal-01339221v1
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DRACO-STEM: An Automatic Tool to Generate High-Quality 3D Meshes of Shoot Apical Meristem Tissue at Cell Resolution

 Guillaume Cerutti , Olivier Ali , Christophe Godin
Frontiers in Plant Science, 2017, 8, pp.353. ⟨10.3389/fpls.2017.00353⟩
Article dans une revue hal-01573521v1
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Temporal integration of auxin information for the regulation of patterning

 Carlos Galvan-Ampudia , Guillaume Cerutti , Jonathan Legrand , Geraldine Brunoud , Raquel Martin Arevalillo , et al.
eLife, 2020, 9, ⟨10.7554/eLife.55832⟩
Article dans une revue hal-02368529v1
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Guiding Active Contours for Tree Leaf Segmentation and Identification

 Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin
CLEF 2011, Conference on Multilingual and Multimodal Information Access Evaluation, Sep 2011, Amsterdam, Netherlands. pp.1
Communication dans un congrès hal-00622274v1
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Meshing Meristems - An Iterative Mesh Optimization Method for Modeling Plant Tissue at Cell Resolution

 Guillaume Cerutti , Christophe Godin
BIOIMAGING, Jan 2015, Lisbonne, Portugal
Communication dans un congrès hal-01100808v1
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Mesh Optimization

 Guillaume Cerutti
Computer graphics. France. 2015
Image medihal-01100828v1
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Curvature-Scale-based Contour Understanding for Leaf Margin Shape Recognition and Species Identification

 Guillaume Cerutti , Laure Tougne , Didier Coquin , Antoine Vacavant
International Conference on Computer Vision Theory and Applications (VISAPP), Feb 2013, Barcelona, Spain. pp.277-284
Communication dans un congrès hal-00872870v1
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An image analysis pipeline to quantify emerging cracks in materials or adhesion defects in living tissues

 Stéphane Verger , Guillaume Cerutti , Olivier Hamant
Bio-protocol , 2018, 8 (19), pp.1-16. ⟨10.21769/BioProtoc.3036⟩
Article dans une revue hal-02171434v1

A quantitative gibberellin signalling biosensor reveals a role for gibberellins in internode specification at the shoot apical meristem

 Teva Vernoux , Bihai Shi , Amelia Felipo-Benavent , Guillaume Cerutti , Carlos Galvan-Ampudia , et al.
2021
Pré-publication, Document de travail hal-03393660v1
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Late Information Fusion for Multi-modality Plant Species Identification

 Guillaume Cerutti , Laure Tougne , Céline Sacca , Thierry Joliveau , Pierre-Olivier Mazagol , et al.
Conference and Labs of the Evaluation Forum, Sep 2013, Valencia, Spain. pp.Working Notes
Communication dans un congrès hal-00872903v1
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Understanding Leaves in Natural Images - A Model-Based Approach for Tree Species Identification

 Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin
Computer Vision and Image Understanding, 2013, 117 (10), pp.1482-1501. ⟨10.1016/j.cviu.2013.07.003⟩
Article dans une revue hal-00872878v1
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3D Tessellation of Plant Tissue A dual optimization approach to cell-level meristem reconstruction from microscopy images

 Guillaume Cerutti , Sophie Ribes , Christophe Godin , Carlos Galvan Ampudia , Teva Vernoux
International Conference on 3D Vision, Oct 2015, Lyon, France. pp.9, ⟨10.1109/3DV.2015.57⟩
Communication dans un congrès hal-01246580v1
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Revisiting PIN1 polarity interpretation at the SAM based on automated multi-level reconstruction of PIN1 polarities from confocal images

 Landry Duguet , Guillaume Cerutti , Carlos Galvan-Ampudia , Etienne Farcot , Teva Vernoux , et al.
From genes to plant architecture: the shoot apical meristem in all its states, Nov 2022, Poitiers, France
Poster de conférence hal-03896961v1

Projet de modèle cellulaire 3D de cambium pour étudier l'influence du stress mécanique

 Félix Hartmann , Christophe Godin , Guillaume Cerutti , Bruno Moulia , Eric Badel
Xylogénèse sous contraintes environnementales multiples, GDR Sciences du bois; INRAE, Jul 2022, Nancy, France
Communication dans un congrès hal-03782696v1
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A parametric active 4D model for the automatic construction of developmental atlases from confocal images of shoot apical meristems

 Guillaume Cerutti , Carlos Galvan-Ampudia , Jonathan Legrand , Teva Vernoux , Christophe Godin
IAMPS - International Workshop on Image Analysis Methods for the Plant Sciences 2018, Jan 2018, Nottingham, United Kingdom. 2018
Poster de conférence hal-01692584v1
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From spatio-temporal morphogenetic gradients to rhythmic patterning at the shoot apex

 Carlos Galvan-Ampudia , Guillaume Cerutti , Jonathan Legrand , Romain Azaïs , Geraldine Brunoud , et al.
2018
Pré-publication, Document de travail hal-01937928v1
Image document

Water fluxes contribute to growth patterning in shoot meristems

 Juan Alonso-Serra , Ibrahim Cheddadi , Annamaria Kiss , Guillaume Cerutti , Claire Lionnet , et al.
2023
Pré-publication, Document de travail hal-04254674v1
Image document

Can U-Net replace CLV3? Machine learning for the identification of biological landmarks in Shoot Apical Meristem images

 Anthony Scriven , Carlos Galvan-Ampudia , Guillaume Cerutti
From genes to plant architecture: the shoot apical meristem in all its states, Nov 2022, Poitiers, France
Poster de conférence hal-03892383v1

Treex : a Python package for manipulating rooted trees

 Romain Azaïs , Guillaume Cerutti , Didier Gemmerlé , Florian Ingels
Journal of Open Source Software, 2019, 4 (38), pp.1-2. ⟨10.21105/joss.01351⟩
Article dans une revue hal-02164364v1
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A Model-Based Approach for Compound Leaves Understanding and Identification

 Guillaume Cerutti , Laure Tougne , Julien Mille , Antoine Vacavant , Didier Coquin
International Conference on Image Processing (ICIP), Sep 2013, Melbourne, Australia. pp.1471-1475
Communication dans un congrès hal-00872889v1

Leaf margins as sequences: A structural approach to leaf identification

 Guillaume Cerutti , Laure Tougne , Didier Coquin , Antoine Vacavant
Pattern Recognition Letters, 2014, 49 (2014), pp.177-184. ⟨10.1016/j.patrec.2014.07.016⟩
Article dans une revue hal-01095539v1
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A Parametric Active Polygon for Leaf Segmentation and Shape Estimation

 Guillaume Cerutti , Laure Tougne , Antoine Vacavant , Didier Coquin
7th International Symposium on Visual Computing, Sep 2011, Las Vegas, United States. pp.202-213
Communication dans un congrès hal-00622269v1
Image document

An Image Analysis Pipeline to Quantify Emerging Cracks in Materials or Adhesion Defects in Living Tissues

 Stéphane Verger , Guillaume Cerutti , Olivier Hamant
Bio-protocol , 2018, 8 (19)
Article dans une revue hal-01940178v1
Image document

Quantifying cell polarities in confocal images using 3D wall meshes

 Guillaume Cerutti , Carlos Galvan Ampudia , Jonathan Legrand , Christophe Godin , Teva Vernoux
IAMPS 2019 - 7th International Workshop on Image Analysis Methods in the Plant Sciences, Jul 2019, Bron, France. pp.1-2
Communication dans un congrès hal-02176398v1

Robust Plant Cell Tracking in Fluorescence Microscopy 3D+T Series

 Manuel Petit , Guillaume Cerutti , Christophe Godin , Grégoire Malandain
ISBI 2022 - IEEE 19th International Symposium on Biomedical Imaging, Mar 2022, Kolkata, India. pp.1-4, ⟨10.1109/ISBI52829.2022.9761521⟩
Communication dans un congrès hal-03683119v1

Bark and Leaf Fusion Systems to Improve Automatic Tree Species Recognition

 Sarah Bertrand , Rihab Ben Ameur , Guillaume Cerutti , Didier Coquin , Lionel Valet , et al.
Ecological Informatics, 2018, ⟨10.1016/j.ecoinf.2018.05.007⟩
Article dans une revue hal-01811039v1
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ReVeS Participation - Tree Species Classification using Random Forests and Botanical Features

 Guillaume Cerutti , Violaine Antoine , Laure Tougne , Julien Mille , Lionel Valet , et al.
Conference and Labs of the Evaluation Forum (CLEF), Sep 2012, Rome, Italy. pp.1
Communication dans un congrès hal-00759848v1
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