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Efficient Tree-Structured Categorical Retrieval

 Djamal Belazzougui , Gregory Kucherov
31st Annual Symposium on Combinatorial Pattern Matching (CPM 2020), Jun 2020, Copenhagen, Denmark. ⟨10.4230/LIPIcs.CPM.2020.4⟩
Communication dans un congrès hal-03049420v1

Efficient alternatives to PSI-BLAST

 Michal Startek , Slawomir Lasota , Maciej Sykulski , Adam Bulak , Laurent Noé , et al.
Bulletin of the Polish Academy of Sciences: Technical Sciences, 2012, 60 (3), pp.495-505. ⟨10.2478/v10175-012-0063-0⟩
Article dans une revue hal-00749016v1

Algorithms for path-constrained sequence alignment

 Tamar Pinhas , Nimrod Milo , Gregory Kucherov , Michal Ziv-Ukelson
Journal of Discrete Algorithms, 2014, 24, pp.48-58. ⟨10.1016/j.jda.2013.09.003⟩
Article dans une revue hal-00824726v1
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Rapid heuristic inference of antibiotic resistance and susceptibility by genomic neighbor typing

 Karel Brinda , Alanna Callendrello , Kevin C Ma , Derek R Macfadden , Themoula Charalampous , et al.
2019
Pré-publication, Document de travail hal-02414869v1

Improved hit criteria for DNA local alignment.

 Laurent Noé , Gregory Kucherov
BMC Bioinformatics, 2004, 5 (149), pp.1-9. ⟨10.1186/1471-2105-5-149⟩
Article dans une revue inria-00448743v1

Designing Efficient Spaced Seeds for SOLiD Read Mapping.

 Laurent Noé , Marta Gîrdea , Gregory Kucherov
Advances in Bioinformatics, 2010, ⟨10.1155/2010/708501⟩
Article dans une revue inria-00527029v1
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Dynamic read mapping and online consensus calling for better variant detection

 Karel Brinda , Valentina Boeva , Gregory Kucherov
2016
Pré-publication, Document de travail hal-01323188v1

How Many Square Occurrences Must a Binary Sequence Contain?

 Gregory Kucherov , Pascal Ochem , Michael Rao
The Electronic Journal of Combinatorics, 2003, 10, pp.R12
Article dans une revue hal-00307205v1
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On repetition-free binary words of minimal density

 Roman Kolpakov , Gregory Kucherov , Yuri Tarannikov
23rd International Symposium on Mathematical Foundations of Computer Science - MFCS'98, 1998, Brno/Czech Republic, pp.683-692, ⟨10.1007/BFb0055819⟩
Communication dans un congrès inria-00098692v1

The complexity of some complementation problems

 David Plaisted , Gregory Kucherov
Information Processing Letters, 1999, 71 (3-4), pp.159-165
Article dans une revue inria-00098851v1

Absent words in a sliding window with applications

 Maxime Crochemore , Alice Héliou , Gregory Kucherov , Laurent Mouchard , Solon Pissis , et al.
Information and Computation, 2019, pp.104461. ⟨10.1016/j.ic.2019.104461⟩
Article dans une revue hal-02414839v1
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Diversity of monomers in nonribosomal peptides: towards the prediction of origin and biological activity.

 Ségolène Caboche , Valérie Leclère , Maude Pupin , Gregory Kucherov , Philippe Jacques
Journal of Bacteriology, 2010, 192 (19), pp.5143-50. ⟨10.1128/JB.00315-10⟩
Article dans une revue hal-00641488v1
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Maximal Repetitions and Application to DNA sequences

 Mathieu Giraud , Gregory Kucherov
Journées Ouvertes : Biologie, Informatique et Mathématiques - JOBIM'2000, 2000, Montpellier/France, pp.165--172
Communication dans un congrès inria-00107854v1

mreps: a program for exhaustive search for tandem repeats in DNA sequences

 Ghizlane Bana , Roman Kolpakov , Mathieu Giraud , Ralph Rabbat , Gregory Kucherov
Sixth Annual International Conference on Research in Computational Biology - RECOMB 2002, Apr 2002, Washington, DC, US
Communication dans un congrès inria-00100869v1
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Finding Repeats With Fixed Gap

 Roman Kolpakov , Gregory Kucherov
7th International Symposium on String Processing & Information Retrieval - SPIRE 2000, 2000, Coruna, Spain, pp.162--168
Communication dans un congrès inria-00107855v1
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Estimating seed sensitivity on homogeneous alignments

 Gregory Kucherov , Laurent Noé , Yann Ponty
[Research Report] RR-5047, INRIA. 2003, pp.17
Rapport inria-00071536v1
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SIGffRid : Programme de recherche des sites de fixation des facteurs de transcription par approche comparative

 Fabrice Touzain , Sophie Schbath , Isabelle Debled-Rennesson , Bertrand Aigle , Pierre Leblond , et al.
Journées Ouvertes Biologie Informatique Mathématiques - JOBIM'05, Guy Perrière, Alain Guénoche et Christophe Geourjon, Jul 2005, Lyon, France. pp.417-425
Communication dans un congrès inria-00000191v1
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Subset seed automaton

 Gregory Kucherov , Laurent Noé , Mihkail Roytberg
CIAA 2007, Jul 2007, Prague, Czech Republic. pp.180-191, ⟨10.1007/978-3-540-76336-9_18⟩
Communication dans un congrès inria-00170414v1
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On subset seeds for protein alignment

 Mikhail A. Roytberg , Anna Gambin , Laurent Noé , Slawomir Lasota , Eugenia Furletova , et al.
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2009, 6 (3), pp.483-494. ⟨10.1109/TCBB.2009.4⟩
Article dans une revue inria-00354773v1
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Efficient seeding techniques for protein similarity search

 Mihkail Roytberg , Anna Gambin , Laurent Noé , Slawomir Lasota , Eugenia Furletova , et al.
Proceedings of the 2nd International Conference BIRD, Jul 2008, Vienna, Austria. pp.466-478, ⟨10.1007/978-3-540-70600-7⟩
Communication dans un congrès inria-00335564v1
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Cross-document pattern matching

 Gregory Kucherov , Yakov Nekrich , Tatiana Starikovskaya
CPM 2012, Jul 2012, Helsinki, Finland. pp.196-207, ⟨10.1007/978-3-642-31265-6_16⟩
Communication dans un congrès hal-00789975v1
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Structural pattern matching of nonribosomal peptides.

 Ségolène Caboche , Maude Pupin , Valérie Leclère , Philippe Jacques , Gregory Kucherov
BMC Structural Biology, 2009, 9 (15), ⟨10.1186/1472-6807-9-15⟩
Article dans une revue hal-00641486v1

Prefix Table Construction and Conversion

 Widmer Bland , Gregory Kucherov , W.F. Smyth
IWOCA, Jun 2013, Rouen, France. pp.41-53, ⟨10.1007/978-3-642-45278-9_5⟩
Communication dans un congrès istex hal-00824756v1
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Special Issue on Computer Science Symposium in Russia (2019)

 René van Bevern , Gregory Kucherov
Theory of Computing Systems, 2021, 65, pp.441 - 443. ⟨10.1007/s00224-021-10033-0⟩
Article dans une revue hal-03447240v1
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Minimal Absent Words in a Sliding Window and Applications to On-Line Pattern Matching

 Maxime Crochemore , Alice Héliou , Gregory Kucherov , Laurent Mouchard , Solon P Pissis , et al.
Fundamentals of Computation Theory, Sep 2017, Bordeaux, France. pp.164 - 176, ⟨10.1007/978-3-662-55751-8_14⟩
Communication dans un congrès hal-01616485v1
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Minimally-overlapping words for sequence similarity search

 Martin Frith , Laurent Noé , Gregory Kucherov
2020
Pré-publication, Document de travail hal-03049398v1
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A unifying framework for seed sensitivity and its application to subset seeds.

 Gregory Kucherov , Laurent Noé , Mihkail Roytberg
Journal of Bioinformatics and Computational Biology, 2006, 4 (2), pp.553-69. ⟨10.1142/S0219720006001977⟩
Article dans une revue hal-00018114v2
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NORINE: a database of nonribosomal peptides.

 Ségolène Caboche , Maude Pupin , Valérie Leclère , Arnaud Fontaine , Philippe Jacques , et al.
Nucleic Acids Research, 2008, Database issue, 36 (Database issue), pp.D326-31. ⟨10.1093/nar/gkm792⟩
Article dans une revue inria-00281012v1

Multi-seed lossless filtration

 Gregory Kucherov , Laurent Noé , Mikhail Roytberg
IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2005, 2 (1), pp.51--61. ⟨10.1109/TCBB.2005.12⟩
Article dans une revue inria-00000718v1
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Finding approximate repetitions under Hamming distance

 Roman Kolpakov , Gregory Kucherov
[Research Report] RR-4163, INRIA. 2001, pp.30
Rapport inria-00072459v1
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